data_NPF # _chem_comp.id NPF _chem_comp.name "2-nitrophenyl beta-D-fucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H15 N O7" _chem_comp.mon_nstd_parent_comp_id FCB _chem_comp.pdbx_synonyms ;ORTHONITROPHENYL-BETA-D-FUCOPYRANOSIDE; 2-nitrophenyl 6-deoxy-beta-D-galactopyranoside; 2-nitrophenyl beta-D-fucoside; 2-nitrophenyl D-fucoside; 2-nitrophenyl fucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-02-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 285.250 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NPF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EFA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NPF ORTHONITROPHENYL-BETA-D-FUCOPYRANOSIDE PDB ? 2 NPF "2-nitrophenyl 6-deoxy-beta-D-galactopyranoside" PDB ? 3 NPF "2-nitrophenyl beta-D-fucoside" PDB ? 4 NPF "2-nitrophenyl D-fucoside" PDB ? 5 NPF "2-nitrophenyl fucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NPF C1A C1 C 0 1 Y N N 5.785 81.059 25.467 1.508 0.236 -0.220 C1A NPF 1 NPF C2A C2 C 0 1 Y N N 5.025 80.907 24.263 1.118 1.482 -0.692 C2A NPF 2 NPF C3A C3 C 0 1 Y N N 3.776 80.274 24.186 2.062 2.468 -0.899 C3A NPF 3 NPF C4A C4 C 0 1 Y N N 3.230 79.772 25.385 3.396 2.214 -0.638 C4A NPF 4 NPF C5A C5 C 0 1 Y N N 3.942 79.886 26.602 3.788 0.975 -0.168 C5A NPF 5 NPF C6A C6 C 0 1 Y N N 5.216 80.508 26.651 2.846 -0.013 0.047 C6A NPF 6 NPF N6 N6 N 1 1 N N N 5.844 80.577 27.913 3.266 -1.340 0.550 N6 NPF 7 NPF O6A O6A O -1 1 N N N 6.943 81.116 28.090 4.442 -1.562 0.775 O6A NPF 8 NPF O6B O6B O 0 1 N N N 5.231 80.067 28.853 2.435 -2.210 0.739 O6B NPF 9 NPF O1 "O1'" O 0 1 N N N 6.596 82.220 25.697 0.580 -0.735 -0.015 O1 NPF 10 NPF C1 "C1'" C 0 1 N N S 7.885 82.626 25.166 -0.687 -0.178 -0.370 C1 NPF 11 NPF C2 "C2'" C 0 1 N N R 8.033 82.971 23.645 -1.760 -1.265 -0.286 C2 NPF 12 NPF O2 "O2'" O 0 1 N N N 8.094 81.803 22.797 -1.422 -2.340 -1.165 O2 NPF 13 NPF C3 "C3'" C 0 1 N N S 9.238 83.851 23.356 -3.110 -0.668 -0.700 C3 NPF 14 NPF O3 "O3'" O 0 1 N N N 9.193 84.176 21.959 -4.146 -1.628 -0.486 O3 NPF 15 NPF C4 "C4'" C 0 1 N N R 9.141 85.138 24.158 -3.375 0.578 0.152 C4 NPF 16 NPF O4 "O4'" O 0 1 N N N 7.980 85.826 23.646 -3.553 0.195 1.517 O4 NPF 17 NPF C5 "C5'" C 0 1 N N R 9.053 84.810 25.659 -2.180 1.527 0.034 C5 NPF 18 NPF C6 "C6'" C 0 1 N N N 8.846 86.079 26.452 -2.451 2.790 0.854 C6 NPF 19 NPF O5 "O5'" O 0 1 N N N 7.990 83.866 25.921 -1.005 0.885 0.526 O5 NPF 20 NPF H2A H2 H 0 1 N N N 5.433 81.309 23.320 0.076 1.680 -0.897 H2A NPF 21 NPF H3A H3 H 0 1 N N N 3.245 80.175 23.223 1.759 3.437 -1.267 H3A NPF 22 NPF H4A H4 H 0 1 N N N 2.239 79.287 25.370 4.134 2.986 -0.802 H4A NPF 23 NPF H5A H5 H 0 1 N N N 3.496 79.483 27.527 4.831 0.780 0.035 H5A NPF 24 NPF H1 "H1'" H 0 1 N N N 8.633 81.804 25.255 -0.640 0.208 -1.388 H1 NPF 25 NPF H2 "H2'" H 0 1 N N N 7.102 83.535 23.401 -1.825 -1.637 0.737 H2 NPF 26 NPF HO2 "HO'2" H 0 1 N Y N 8.183 82.012 21.874 -0.565 -2.681 -0.872 HO2 NPF 27 NPF H3 "H3'" H 0 1 N N N 10.182 83.325 23.627 -3.080 -0.391 -1.754 H3 NPF 28 NPF HO3 "HO'3" H 0 1 N Y N 9.946 84.726 21.778 -3.931 -2.398 -1.031 HO3 NPF 29 NPF H4 "H4'" H 0 1 N N N 10.037 85.793 24.053 -4.274 1.080 -0.206 H4 NPF 30 NPF HO4 "HO'4" H 0 1 N Y N 7.919 86.630 24.147 -3.717 1.006 2.017 HO4 NPF 31 NPF H5 "H5'" H 0 1 N N N 10.012 84.338 25.975 -2.034 1.798 -1.011 H5 NPF 32 NPF H61 "H6'1" H 0 1 N N N 8.782 85.841 27.539 -1.601 3.468 0.769 H61 NPF 33 NPF H62 "H6'2" H 0 1 N N N 9.631 86.840 26.235 -3.347 3.283 0.477 H62 NPF 34 NPF H63 "H6'3" H 0 1 N N N 7.959 86.654 26.096 -2.597 2.520 1.900 H63 NPF 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NPF C1A C2A DOUB Y N 1 NPF C1A C6A SING Y N 2 NPF C1A O1 SING N N 3 NPF C2A C3A SING Y N 4 NPF C2A H2A SING N N 5 NPF C3A C4A DOUB Y N 6 NPF C3A H3A SING N N 7 NPF C4A C5A SING Y N 8 NPF C4A H4A SING N N 9 NPF C5A C6A DOUB Y N 10 NPF C5A H5A SING N N 11 NPF C6A N6 SING N N 12 NPF N6 O6A SING N N 13 NPF N6 O6B DOUB N N 14 NPF O1 C1 SING N N 15 NPF C1 C2 SING N N 16 NPF C1 O5 SING N N 17 NPF C1 H1 SING N N 18 NPF C2 O2 SING N N 19 NPF C2 C3 SING N N 20 NPF C2 H2 SING N N 21 NPF O2 HO2 SING N N 22 NPF C3 O3 SING N N 23 NPF C3 C4 SING N N 24 NPF C3 H3 SING N N 25 NPF O3 HO3 SING N N 26 NPF C4 O4 SING N N 27 NPF C4 C5 SING N N 28 NPF C4 H4 SING N N 29 NPF O4 HO4 SING N N 30 NPF C5 C6 SING N N 31 NPF C5 O5 SING N N 32 NPF C5 H5 SING N N 33 NPF C6 H61 SING N N 34 NPF C6 H62 SING N N 35 NPF C6 H63 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NPF SMILES ACDLabs 10.04 "[O-][N+](=O)c2c(OC1OC(C(O)C(O)C1O)C)cccc2" NPF SMILES_CANONICAL CACTVS 3.341 "C[C@H]1O[C@@H](Oc2ccccc2[N+]([O-])=O)[C@H](O)[C@@H](O)[C@H]1O" NPF SMILES CACTVS 3.341 "C[CH]1O[CH](Oc2ccccc2[N+]([O-])=O)[CH](O)[CH](O)[CH]1O" NPF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)Oc2ccccc2[N+](=O)[O-])O)O)O" NPF SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)Oc2ccccc2[N+](=O)[O-])O)O)O" NPF InChI InChI 1.03 "InChI=1S/C12H15NO7/c1-6-9(14)10(15)11(16)12(19-6)20-8-5-3-2-4-7(8)13(17)18/h2-6,9-12,14-16H,1H3/t6-,9+,10+,11-,12+/m1/s1" NPF InChIKey InChI 1.03 SWRPIVXPHLYETN-BVWHHUJWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NPF "SYSTEMATIC NAME" ACDLabs 10.04 "2-nitrophenyl 6-deoxy-beta-D-galactopyranoside" NPF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R,6S)-2-methyl-6-(2-nitrophenoxy)oxane-3,4,5-triol" NPF "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 orthonitrophenyl-b-D-fucopyranoside # _pdbx_chem_comp_related.comp_id NPF _pdbx_chem_comp_related.related_comp_id FCB _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 NPF C1 FCB C1 "Carbohydrate core" 2 NPF C2 FCB C2 "Carbohydrate core" 3 NPF C3 FCB C3 "Carbohydrate core" 4 NPF C4 FCB C4 "Carbohydrate core" 5 NPF C5 FCB C5 "Carbohydrate core" 6 NPF C6 FCB C6 "Carbohydrate core" 7 NPF O1 FCB O1 "Carbohydrate core" 8 NPF O2 FCB O2 "Carbohydrate core" 9 NPF O3 FCB O3 "Carbohydrate core" 10 NPF O4 FCB O4 "Carbohydrate core" 11 NPF O5 FCB O5 "Carbohydrate core" 12 NPF H1 FCB H1 "Carbohydrate core" 13 NPF H2 FCB H2 "Carbohydrate core" 14 NPF H3 FCB H3 "Carbohydrate core" 15 NPF H4 FCB H4 "Carbohydrate core" 16 NPF H5 FCB H5 "Carbohydrate core" 17 NPF H61 FCB H61 "Carbohydrate core" 18 NPF H62 FCB H62 "Carbohydrate core" 19 NPF H63 FCB H63 "Carbohydrate core" 20 NPF HO2 FCB HO2 "Carbohydrate core" 21 NPF HO3 FCB HO3 "Carbohydrate core" 22 NPF HO4 FCB HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support NPF "CARBOHYDRATE ISOMER" D PDB ? NPF "CARBOHYDRATE RING" pyranose PDB ? NPF "CARBOHYDRATE ANOMER" beta PDB ? NPF "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NPF "Create component" 2000-02-08 RCSB NPF "Modify descriptor" 2011-06-04 RCSB NPF "Other modification" 2020-07-03 RCSB NPF "Modify parent residue" 2020-07-17 RCSB NPF "Modify name" 2020-07-17 RCSB NPF "Modify synonyms" 2020-07-17 RCSB NPF "Modify internal type" 2020-07-17 RCSB NPF "Modify linking type" 2020-07-17 RCSB NPF "Modify atom id" 2020-07-17 RCSB NPF "Modify component atom id" 2020-07-17 RCSB NPF "Modify leaving atom flag" 2020-07-17 RCSB ##