data_NPK # _chem_comp.id NPK _chem_comp.name "5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 N3 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-12-15 _chem_comp.pdbx_modified_date 2011-12-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 481.476 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NPK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VHM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NPK N1 N1 N 0 1 N N N -12.066 11.194 -4.955 0.263 0.398 -0.376 N1 NPK 1 NPK S1 S1 S 0 1 N N N -10.124 10.520 -8.000 3.740 1.960 0.183 S1 NPK 2 NPK C2 C2 C 0 1 N N R -9.171 11.121 -6.638 3.706 0.126 0.050 C2 NPK 3 NPK N2 N2 N 0 1 N N N -10.213 12.081 -5.019 1.750 -1.285 -0.413 N2 NPK 4 NPK C3 C3 C 0 1 N N N -11.417 12.351 -4.862 0.494 -0.901 -0.145 C3 NPK 5 NPK O3 O3 O 0 1 N N N -11.897 13.494 -4.719 -0.357 -1.663 0.270 O3 NPK 6 NPK C4 C4 C 0 1 N N S -9.889 10.723 -5.364 2.514 -0.123 -0.894 C4 NPK 7 NPK C5 C5 C 0 1 N N R -11.269 10.123 -5.599 1.499 1.026 -0.869 C5 NPK 8 NPK C6 C6 C 0 1 N N N -11.571 10.049 -7.106 1.914 2.155 0.094 C6 NPK 9 NPK C7 C7 C 0 1 N N N -7.762 10.627 -6.719 5.005 -0.397 -0.566 C7 NPK 10 NPK C8 C8 C 0 1 N N N -6.867 11.703 -7.203 6.168 -0.129 0.391 C8 NPK 11 NPK C9 C9 C 0 1 N N N -5.681 10.881 -7.379 7.467 -0.652 -0.225 C9 NPK 12 NPK C10 C10 C 0 1 N N N -4.548 11.062 -7.992 8.630 -0.384 0.732 C10 NPK 13 NPK C11 C11 C 0 1 N N N -3.892 9.766 -7.750 9.910 -0.899 0.125 C11 NPK 14 NPK O11 O11 O 0 1 N N N -3.341 9.164 -8.658 9.893 -1.426 -0.962 O11 NPK 15 NPK O12 O12 O 0 1 N N N -3.944 9.236 -6.596 11.068 -0.772 0.792 O12 NPK 16 NPK C30 C30 C 0 1 N N N -13.297 11.044 -4.426 -0.915 1.028 -0.192 C30 NPK 17 NPK O31 O31 O 0 1 N N N -13.978 11.902 -3.888 -1.013 2.214 -0.435 O31 NPK 18 NPK O32 O32 O 0 1 N N N -13.956 9.794 -4.607 -1.981 0.342 0.261 O32 NPK 19 NPK C33 C33 C 0 1 N N R -14.356 9.008 -3.529 -3.216 1.085 0.435 C33 NPK 20 NPK C34 C34 C 0 1 N N N -15.429 8.004 -4.035 -3.273 1.655 1.854 C34 NPK 21 NPK C35 C35 C 0 1 Y N N -14.584 9.434 -2.095 -4.390 0.166 0.216 C35 NPK 22 NPK C36 C36 C 0 1 Y N N -13.492 8.985 -1.360 -4.228 -1.202 0.340 C36 NPK 23 NPK C37 C37 C 0 1 Y N N -13.477 9.136 0.002 -5.306 -2.049 0.140 C37 NPK 24 NPK C38 C38 C 0 1 Y N N -14.634 9.727 0.683 -6.552 -1.519 -0.186 C38 NPK 25 NPK C39 C39 C 0 1 Y N N -15.771 10.159 0.038 -6.707 -0.148 -0.308 C39 NPK 26 NPK C40 C40 C 0 1 Y N N -15.797 10.005 -1.367 -5.628 0.692 -0.102 C40 NPK 27 NPK N40 N40 N 1 1 N N N -16.959 10.533 -1.997 -5.798 2.157 -0.229 N40 NPK 28 NPK O44 O44 O 0 1 N N N -12.482 8.792 0.892 -5.412 -3.408 0.200 O44 NPK 29 NPK C45 C45 C 0 1 N N N -12.982 9.132 2.208 -6.821 -3.680 0.309 C45 NPK 30 NPK O46 O46 O 0 1 N N N -14.314 9.732 2.005 -7.438 -2.547 -0.331 O46 NPK 31 NPK O54 O54 O 0 1 N N N -17.373 10.212 -3.109 -6.904 2.627 -0.423 O54 NPK 32 NPK O55 O55 O -1 1 N N N -17.524 11.450 -1.393 -4.831 2.891 -0.138 O55 NPK 33 NPK H2 H2 H 0 1 N N N -9.175 12.218 -6.722 3.529 -0.329 1.025 H2 NPK 34 NPK HN2 HN2 H 0 1 N N N -9.503 12.776 -4.910 2.099 -2.183 -0.306 HN2 NPK 35 NPK H4 H4 H 0 1 N N N -9.269 10.174 -4.640 2.868 -0.299 -1.910 H4 NPK 36 NPK H5 H5 H 0 1 N N N -11.388 9.147 -5.107 1.348 1.418 -1.875 H5 NPK 37 NPK H6 H6 H 0 1 N N N -12.396 10.733 -7.352 1.461 2.011 1.076 H6 NPK 38 NPK H6A H6A H 0 1 N N N -11.854 9.021 -7.376 1.648 3.129 -0.316 H6A NPK 39 NPK H7 H7 H 0 1 N N N -7.433 10.303 -5.721 4.918 -1.469 -0.741 H7 NPK 40 NPK H7A H7A H 0 1 N N N -7.715 9.776 -7.414 5.189 0.112 -1.512 H7A NPK 41 NPK H8 H8 H 0 1 N N N -7.215 12.147 -8.147 6.255 0.944 0.566 H8 NPK 42 NPK H8A H8A H 0 1 N N N -6.722 12.497 -6.456 5.985 -0.637 1.338 H8A NPK 43 NPK H9 H9 H 0 1 N N N -5.374 10.659 -6.346 7.380 -1.724 -0.400 H9 NPK 44 NPK H9A H9A H 0 1 N N N -6.076 9.968 -7.848 7.651 -0.143 -1.171 H9A NPK 45 NPK H10 H10 H 0 1 N N N -4.694 11.247 -9.066 8.717 0.689 0.907 H10 NPK 46 NPK H10A H10A H 0 0 N N N -3.978 11.893 -7.551 8.446 -0.892 1.679 H10A NPK 47 NPK HO12 HO12 H 0 0 N N N -3.514 8.389 -6.616 11.862 -1.117 0.362 HO12 NPK 48 NPK H33 H33 H 0 1 N N N -13.493 8.336 -3.410 -3.254 1.901 -0.286 H33 NPK 49 NPK H34 H34 H 0 1 N N N -15.762 7.370 -3.200 -3.234 0.839 2.575 H34 NPK 50 NPK H34A H34A H 0 0 N N N -16.289 8.559 -4.439 -2.424 2.320 2.012 H34A NPK 51 NPK H34B H34B H 0 0 N N N -14.996 7.372 -4.825 -4.200 2.212 1.985 H34B NPK 52 NPK H36 H36 H 0 1 N N N -12.657 8.518 -1.862 -3.260 -1.610 0.593 H36 NPK 53 NPK H39 H39 H 0 1 N N N -16.600 10.593 0.577 -7.672 0.266 -0.561 H39 NPK 54 NPK H45 H45 H 0 1 N N N -13.063 8.228 2.830 -7.076 -4.601 -0.215 H45 NPK 55 NPK H45A H45A H 0 0 N N N -12.310 9.854 2.696 -7.121 -3.738 1.355 H45A NPK 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NPK N1 C3 SING N N 1 NPK N1 C5 SING N N 2 NPK N1 C30 SING N N 3 NPK S1 C2 SING N N 4 NPK S1 C6 SING N N 5 NPK C2 C4 SING N N 6 NPK C2 C7 SING N N 7 NPK N2 C3 SING N N 8 NPK N2 C4 SING N N 9 NPK C3 O3 DOUB N N 10 NPK C4 C5 SING N N 11 NPK C5 C6 SING N N 12 NPK C7 C8 SING N N 13 NPK C8 C9 SING N N 14 NPK C9 C10 SING N N 15 NPK C10 C11 SING N N 16 NPK C11 O11 DOUB N N 17 NPK C11 O12 SING N N 18 NPK C30 O31 DOUB N N 19 NPK C30 O32 SING N N 20 NPK O32 C33 SING N N 21 NPK C33 C34 SING N N 22 NPK C33 C35 SING N N 23 NPK C35 C36 DOUB Y N 24 NPK C35 C40 SING Y N 25 NPK C36 C37 SING Y N 26 NPK C37 C38 DOUB Y N 27 NPK C37 O44 SING N N 28 NPK C38 C39 SING Y N 29 NPK C38 O46 SING N N 30 NPK C39 C40 DOUB Y N 31 NPK C40 N40 SING N N 32 NPK N40 O54 DOUB N N 33 NPK N40 O55 SING N N 34 NPK O44 C45 SING N N 35 NPK C45 O46 SING N N 36 NPK C2 H2 SING N N 37 NPK N2 HN2 SING N N 38 NPK C4 H4 SING N N 39 NPK C5 H5 SING N N 40 NPK C6 H6 SING N N 41 NPK C6 H6A SING N N 42 NPK C7 H7 SING N N 43 NPK C7 H7A SING N N 44 NPK C8 H8 SING N N 45 NPK C8 H8A SING N N 46 NPK C9 H9 SING N N 47 NPK C9 H9A SING N N 48 NPK C10 H10 SING N N 49 NPK C10 H10A SING N N 50 NPK O12 HO12 SING N N 51 NPK C33 H33 SING N N 52 NPK C34 H34 SING N N 53 NPK C34 H34A SING N N 54 NPK C34 H34B SING N N 55 NPK C36 H36 SING N N 56 NPK C39 H39 SING N N 57 NPK C45 H45 SING N N 58 NPK C45 H45A SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NPK SMILES ACDLabs 12.01 "[O-][N+](=O)c1cc4OCOc4cc1C(OC(=O)N2C(=O)NC3C(SCC23)CCCCC(=O)O)C" NPK InChI InChI 1.03 "InChI=1S/C20H23N3O9S/c1-10(11-6-14-15(31-9-30-14)7-12(11)23(28)29)32-20(27)22-13-8-33-16(18(13)21-19(22)26)4-2-3-5-17(24)25/h6-7,10,13,16,18H,2-5,8-9H2,1H3,(H,21,26)(H,24,25)/t10-,13+,16-,18+/m1/s1" NPK InChIKey InChI 1.03 MVOCLTWEOIJKEV-JTWAPGJUSA-N NPK SMILES_CANONICAL CACTVS 3.370 "C[C@@H](OC(=O)N1[C@H]2CS[C@H](CCCCC(O)=O)[C@H]2NC1=O)c3cc4OCOc4cc3[N+]([O-])=O" NPK SMILES CACTVS 3.370 "C[CH](OC(=O)N1[CH]2CS[CH](CCCCC(O)=O)[CH]2NC1=O)c3cc4OCOc4cc3[N+]([O-])=O" NPK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](c1cc2c(cc1[N+](=O)[O-])OCO2)OC(=O)N3[C@H]4CS[C@@H]([C@H]4NC3=O)CCCCC(=O)O" NPK SMILES "OpenEye OEToolkits" 1.7.6 "CC(c1cc2c(cc1[N+](=O)[O-])OCO2)OC(=O)N3C4CSC(C4NC3=O)CCCCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NPK "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid" NPK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[(3aR,6R,6aS)-3-[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl-2-oxidanylidene-3a,4,6,6a-tetrahydro-1H-thieno[3,4-d]imidazol-6-yl]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NPK "Create component" 2011-12-15 PDBJ #