data_NQD # _chem_comp.id NQD _chem_comp.name "(2Z,6E,10E)-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-2H-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,6,10-trienoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H38 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "garcinoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-05-23 _chem_comp.pdbx_modified_date 2020-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.588 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NQD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6P2B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NQD C12 C1 C 0 1 N N N 11.607 35.988 22.022 -2.269 0.565 0.965 C12 NQD 1 NQD C11 C2 C 0 1 N N N 10.899 35.146 20.946 -3.759 0.500 1.178 C11 NQD 2 NQD C01 C3 C 0 1 N N N 8.745 36.291 21.484 -3.529 -1.922 1.385 C01 NQD 3 NQD C02 C4 C 0 1 N N N 9.587 35.273 20.704 -4.335 -0.649 1.431 C02 NQD 4 NQD C03 C5 C 0 1 N N N 8.933 34.384 19.626 -5.803 -0.698 1.769 C03 NQD 5 NQD C04 C6 C 0 1 N N N 9.062 32.892 19.918 -6.608 -0.989 0.502 C04 NQD 6 NQD C05 C7 C 0 1 N N N 10.471 32.430 19.541 -8.076 -1.038 0.840 C05 NQD 7 NQD C06 C8 C 0 1 N N N 11.103 31.412 20.099 -8.935 -0.257 0.190 C06 NQD 8 NQD C07 C9 C 0 1 N N N 12.508 31.094 19.589 -10.383 -0.218 0.607 C07 NQD 9 NQD C08 C10 C 0 1 N N N 10.514 30.531 21.213 -8.472 0.567 -0.936 C08 NQD 10 NQD C13 C11 C 0 1 N N N 11.938 34.978 23.135 -1.975 1.178 -0.405 C13 NQD 11 NQD C14 C12 C 0 1 N N N 13.045 35.404 24.127 -0.485 1.244 -0.618 C14 NQD 12 NQD C15 C13 C 0 1 N N N 14.228 36.261 23.686 0.301 2.414 -0.087 C15 NQD 13 NQD C16 C14 C 0 1 N N N 12.916 34.986 25.390 0.127 0.283 -1.265 C16 NQD 14 NQD C17 C15 C 0 1 N N N 13.918 35.273 26.515 1.630 0.284 -1.370 C17 NQD 15 NQD C18 C16 C 0 1 N N N 13.278 34.796 27.840 2.189 -0.981 -0.716 C18 NQD 16 NQD C19 C17 C 0 1 N N R 13.488 33.310 28.256 3.715 -0.980 -0.823 C19 NQD 17 NQD C20 C18 C 0 1 N N N 12.735 33.695 29.558 4.129 -0.820 -2.287 C20 NQD 18 NQD C21 C19 C 0 1 N N N 14.971 33.576 28.136 4.273 -2.297 -0.269 C21 NQD 19 NQD C22 C20 C 0 1 N N N 15.627 32.290 27.728 5.787 -2.310 -0.493 C22 NQD 20 NQD C23 C21 C 0 1 Y N N 14.790 31.593 26.638 6.380 -1.004 -0.029 C23 NQD 21 NQD C24 C22 C 0 1 Y N N 15.461 30.614 25.890 7.743 -0.939 0.209 C24 NQD 22 NQD C25 C23 C 0 1 Y N N 14.792 29.925 24.890 8.322 0.246 0.634 C25 NQD 23 NQD C26 C24 C 0 1 Y N N 13.434 30.201 24.613 7.535 1.372 0.821 C26 NQD 24 NQD C27 C25 C 0 1 Y N N 12.759 31.183 25.352 6.176 1.308 0.586 C27 NQD 25 NQD C28 C26 C 0 1 Y N N 13.442 31.884 26.375 5.593 0.119 0.161 C28 NQD 26 NQD C30 C27 C 0 1 N N N 11.289 31.492 25.039 5.321 2.532 0.789 C30 NQD 27 NQD O09 O1 O 0 1 N N N 10.897 29.341 21.322 -8.267 1.754 -0.775 O09 NQD 28 NQD O10 O2 O 0 1 N N N 9.666 30.956 22.040 -8.276 0.007 -2.146 O10 NQD 29 NQD O29 O3 O 0 1 N N N 12.735 32.901 27.132 4.250 0.096 -0.052 O29 NQD 30 NQD O31 O4 O 0 1 N N N 15.491 28.966 24.165 9.661 0.304 0.867 O31 NQD 31 NQD H1 H1 H 0 1 N N N 12.525 36.441 21.621 -1.817 1.181 1.743 H1 NQD 32 NQD H2 H2 H 0 1 N N N 10.942 36.779 22.398 -1.851 -0.440 1.010 H2 NQD 33 NQD H3 H3 H 0 1 N N N 11.474 34.435 20.371 -4.353 1.400 1.121 H3 NQD 34 NQD H4 H4 H 0 1 N N N 9.386 36.824 22.202 -3.037 -2.075 2.345 H4 NQD 35 NQD H5 H5 H 0 1 N N N 8.300 37.013 20.783 -4.191 -2.763 1.177 H5 NQD 36 NQD H6 H6 H 0 1 N N N 7.945 35.766 22.027 -2.778 -1.848 0.599 H6 NQD 37 NQD H7 H7 H 0 1 N N N 9.415 34.594 18.660 -5.981 -1.486 2.502 H7 NQD 38 NQD H8 H8 H 0 1 N N N 7.864 34.637 19.565 -6.112 0.261 2.185 H8 NQD 39 NQD H9 H9 H 0 1 N N N 8.321 32.335 19.326 -6.430 -0.201 -0.231 H9 NQD 40 NQD H10 H10 H 0 1 N N N 8.888 32.710 20.989 -6.299 -1.948 0.086 H10 NQD 41 NQD H11 H11 H 0 1 N N N 10.986 32.975 18.763 -8.431 -1.707 1.610 H11 NQD 42 NQD H12 H12 H 0 1 N N N 12.911 30.230 20.138 -10.524 0.561 1.357 H12 NQD 43 NQD H13 H13 H 0 1 N N N 12.464 30.858 18.516 -11.006 -0.003 -0.261 H13 NQD 44 NQD H14 H14 H 0 1 N N N 13.161 31.965 19.746 -10.666 -1.182 1.028 H14 NQD 45 NQD H15 H15 H 0 1 N N N 11.019 34.800 23.712 -2.427 0.562 -1.183 H15 NQD 46 NQD H16 H16 H 0 1 N N N 12.258 34.041 22.656 -2.393 2.184 -0.451 H16 NQD 47 NQD H17 H17 H 0 1 N N N 14.889 36.444 24.546 -0.372 3.102 0.424 H17 NQD 48 NQD H18 H18 H 0 1 N N N 14.788 35.736 22.898 1.056 2.057 0.613 H18 NQD 49 NQD H19 H19 H 0 1 N N N 13.860 37.221 23.296 0.788 2.931 -0.914 H19 NQD 50 NQD H20 H20 H 0 1 N N N 12.041 34.403 25.637 -0.445 -0.510 -1.722 H20 NQD 51 NQD H21 H21 H 0 1 N N N 14.855 34.726 26.332 1.921 0.309 -2.420 H21 NQD 52 NQD H22 H22 H 0 1 N N N 14.127 36.352 26.566 2.030 1.162 -0.862 H22 NQD 53 NQD H23 H23 H 0 1 N N N 13.687 35.423 28.646 1.898 -1.006 0.334 H23 NQD 54 NQD H24 H24 H 0 1 N N N 12.194 34.964 27.759 1.790 -1.859 -1.224 H24 NQD 55 NQD H25 H25 H 0 1 N N N 13.462 33.987 30.330 3.739 0.121 -2.674 H25 NQD 56 NQD H26 H26 H 0 1 N N N 12.058 34.538 29.354 5.216 -0.819 -2.360 H26 NQD 57 NQD H27 H27 H 0 1 N N N 12.151 32.833 29.912 3.726 -1.648 -2.871 H27 NQD 58 NQD H28 H28 H 0 1 N N N 15.372 33.912 29.104 4.059 -2.368 0.797 H28 NQD 59 NQD H29 H29 H 0 1 N N N 15.154 34.349 27.375 3.817 -3.138 -0.792 H29 NQD 60 NQD H30 H30 H 0 1 N N N 15.708 31.629 28.603 6.230 -3.131 0.071 H30 NQD 61 NQD H31 H31 H 0 1 N N N 16.632 32.503 27.335 5.996 -2.445 -1.555 H31 NQD 62 NQD H32 H32 H 0 1 N N N 16.499 30.397 26.093 8.356 -1.816 0.063 H32 NQD 63 NQD H33 H33 H 0 1 N N N 12.918 29.658 23.835 7.983 2.297 1.151 H33 NQD 64 NQD H34 H34 H 0 1 N N N 10.640 30.848 25.651 5.272 3.099 -0.140 H34 NQD 65 NQD H35 H35 H 0 1 N N N 11.079 32.547 25.268 4.317 2.228 1.083 H35 NQD 66 NQD H36 H36 H 0 1 N N N 11.093 31.302 23.973 5.757 3.153 1.571 H36 NQD 67 NQD H37 H37 H 0 1 N N N 9.441 30.262 22.649 -7.971 0.589 -2.855 H37 NQD 68 NQD H38 H38 H 0 1 N N N 16.384 28.915 24.485 10.184 0.556 0.094 H38 NQD 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NQD C05 C04 SING N N 1 NQD C05 C06 DOUB N Z 2 NQD C07 C06 SING N N 3 NQD C03 C04 SING N N 4 NQD C03 C02 SING N N 5 NQD C06 C08 SING N N 6 NQD C02 C11 DOUB N E 7 NQD C02 C01 SING N N 8 NQD C11 C12 SING N N 9 NQD C08 O09 DOUB N N 10 NQD C08 O10 SING N N 11 NQD C12 C13 SING N N 12 NQD C13 C14 SING N N 13 NQD C15 C14 SING N N 14 NQD C14 C16 DOUB N E 15 NQD O31 C25 SING N N 16 NQD C26 C25 DOUB Y N 17 NQD C26 C27 SING Y N 18 NQD C25 C24 SING Y N 19 NQD C30 C27 SING N N 20 NQD C27 C28 DOUB Y N 21 NQD C16 C17 SING N N 22 NQD C24 C23 DOUB Y N 23 NQD C28 C23 SING Y N 24 NQD C28 O29 SING N N 25 NQD C17 C18 SING N N 26 NQD C23 C22 SING N N 27 NQD O29 C19 SING N N 28 NQD C22 C21 SING N N 29 NQD C18 C19 SING N N 30 NQD C21 C19 SING N N 31 NQD C19 C20 SING N N 32 NQD C12 H1 SING N N 33 NQD C12 H2 SING N N 34 NQD C11 H3 SING N N 35 NQD C01 H4 SING N N 36 NQD C01 H5 SING N N 37 NQD C01 H6 SING N N 38 NQD C03 H7 SING N N 39 NQD C03 H8 SING N N 40 NQD C04 H9 SING N N 41 NQD C04 H10 SING N N 42 NQD C05 H11 SING N N 43 NQD C07 H12 SING N N 44 NQD C07 H13 SING N N 45 NQD C07 H14 SING N N 46 NQD C13 H15 SING N N 47 NQD C13 H16 SING N N 48 NQD C15 H17 SING N N 49 NQD C15 H18 SING N N 50 NQD C15 H19 SING N N 51 NQD C16 H20 SING N N 52 NQD C17 H21 SING N N 53 NQD C17 H22 SING N N 54 NQD C18 H23 SING N N 55 NQD C18 H24 SING N N 56 NQD C20 H25 SING N N 57 NQD C20 H26 SING N N 58 NQD C20 H27 SING N N 59 NQD C21 H28 SING N N 60 NQD C21 H29 SING N N 61 NQD C22 H30 SING N N 62 NQD C22 H31 SING N N 63 NQD C24 H32 SING N N 64 NQD C26 H33 SING N N 65 NQD C30 H34 SING N N 66 NQD C30 H35 SING N N 67 NQD C30 H36 SING N N 68 NQD O10 H37 SING N N 69 NQD O31 H38 SING N N 70 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NQD SMILES ACDLabs 12.01 "C(C\C(=C\CCC2(C)CCc1cc(cc(c1O2)C)O)C)[C@H]=C(C)CC\C=C(/C(=O)O)C" NQD InChI InChI 1.03 "InChI=1S/C27H38O4/c1-19(11-7-13-21(3)26(29)30)9-6-10-20(2)12-8-15-27(5)16-14-23-18-24(28)17-22(4)25(23)31-27/h9,12-13,17-18,28H,6-8,10-11,14-16H2,1-5H3,(H,29,30)/b19-9+,20-12+,21-13-/t27-/m1/s1" NQD InChIKey InChI 1.03 QOFWRHWADNWKSU-HGPKLCRWSA-N NQD SMILES_CANONICAL CACTVS 3.385 "C\C(CC\C=C(\C)C(O)=O)=C/CC\C(C)=C\CC[C@]1(C)CCc2cc(O)cc(C)c2O1" NQD SMILES CACTVS 3.385 "CC(CCC=C(C)C(O)=O)=CCCC(C)=CCC[C]1(C)CCc2cc(O)cc(C)c2O1" NQD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc2c1O[C@](CC2)(C)CC/C=C(\C)/CC/C=C(\C)/CC/C=C(/C)\C(=O)O)O" NQD SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc2c1OC(CC2)(C)CCC=C(C)CCC=C(C)CCC=C(C)C(=O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NQD "SYSTEMATIC NAME" ACDLabs 12.01 "(2Z,6E,10E)-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-2H-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,6,10-trienoic acid" NQD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{Z},6~{E},10~{E})-13-[(2~{R})-2,8-dimethyl-6-oxidanyl-3,4-dihydrochromen-2-yl]-2,6,10-trimethyl-trideca-2,6,10-trienoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NQD "Create component" 2019-05-23 RCSB NQD "Initial release" 2020-04-01 RCSB NQD "Modify synonyms" 2020-11-06 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NQD _pdbx_chem_comp_synonyms.name "garcinoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##