data_NR0 # _chem_comp.id NR0 _chem_comp.name "N-[(3R,4R)-4-aminooxolan-3-yl]-2-(6-amino-9H-purin-9-yl)-N-(2-oxoethyl)acetamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 335.319 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UID _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NR0 C10 C10 C 0 1 N N N N N N 39.828 16.309 23.602 3.397 0.060 -1.401 C10 NR0 1 NR0 C11 C11 C 0 1 N N N N N N 36.464 17.412 24.546 0.440 -0.022 0.565 C11 NR0 2 NR0 C12 C12 C 0 1 N N N N N N 36.511 16.711 25.983 -0.304 -1.076 -0.215 C12 NR0 3 NR0 C14 C14 C 0 1 Y N N N N N 34.545 17.351 27.396 -2.339 -1.811 1.084 C14 NR0 4 NR0 C16 C16 C 0 1 Y N N N N N 34.214 15.562 26.119 -2.678 -0.218 -0.403 C16 NR0 5 NR0 C17 C17 C 0 1 Y N N N N N 33.046 15.909 26.825 -3.880 -0.531 0.253 C17 NR0 6 NR0 C18 C18 C 0 1 Y N N N N N 31.969 15.043 26.592 -5.040 0.171 -0.117 C18 NR0 7 NR0 C21 C21 C 0 1 Y N N N N N 33.309 13.828 25.124 -3.791 1.354 -1.656 C21 NR0 8 NR0 C C02 C 0 1 N N N Y N Y 37.121 17.551 21.343 2.634 2.332 0.597 C02 NR0 9 NR0 C03 C03 C 0 1 N N N Y N N 37.687 18.372 22.532 2.515 1.012 1.315 C03 NR0 10 NR0 C05 C05 C 0 1 N N R Y N N 39.017 17.280 24.477 2.507 -0.793 -0.469 C05 NR0 11 NR0 CA C06 C 0 1 N N R Y N N 40.052 18.396 24.723 3.509 -1.697 0.283 C06 NR0 12 NR0 C08 C08 C 0 1 N N N N N N 41.357 17.601 24.952 4.886 -1.284 -0.283 C08 NR0 13 NR0 N04 N04 N 0 1 N N N Y N N 37.680 17.665 23.843 1.781 0.064 0.473 N04 NR0 14 NR0 N N07 N 0 1 N N N Y Y N 39.710 19.255 25.851 3.240 -3.112 -0.001 N07 NR0 15 NR0 N13 N13 N 0 1 Y N N N N N 35.178 16.545 26.494 -1.724 -1.038 0.144 N13 NR0 16 NR0 N15 N15 N 0 1 Y N N N N N 33.283 17.024 27.685 -3.605 -1.514 1.143 N15 NR0 17 NR0 N19 N19 N 0 1 N N N N N N 30.722 15.264 27.234 -6.253 -0.094 0.494 N19 NR0 18 NR0 N20 N20 N 0 1 Y N N N N N 32.109 14.000 25.734 -4.945 1.095 -1.067 N20 NR0 19 NR0 N22 N22 N 0 1 Y N N N N N 34.434 14.570 25.227 -2.679 0.725 -1.339 N22 NR0 20 NR0 O O01 O 0 1 N N N Y N Y 36.993 18.122 20.302 2.156 2.467 -0.504 O01 NR0 21 NR0 O09 O09 O 0 1 N N N N N N 41.287 16.525 23.891 4.597 -0.723 -1.582 O09 NR0 22 NR0 O23 O23 O 0 1 N N N N N N 35.396 17.684 24.026 -0.170 0.751 1.274 O23 NR0 23 NR0 H102 H102 H 0 0 N N N N N N 39.625 16.507 22.539 2.899 0.220 -2.358 H102 NR0 24 NR0 H101 H101 H 0 0 N N N N N N 39.550 15.272 23.841 3.633 1.014 -0.931 H101 NR0 25 NR0 H121 H121 H 0 0 N N N N N N 36.991 15.726 25.892 -0.193 -0.884 -1.282 H121 NR0 26 NR0 H122 H122 H 0 0 N N N N N N 37.091 17.339 26.676 0.105 -2.058 0.022 H122 NR0 27 NR0 H141 H141 H 0 0 N N N N N N 35.035 18.201 27.848 -1.849 -2.562 1.686 H141 NR0 28 NR0 H211 H211 H 0 0 N N N N N N 33.374 12.977 24.462 -3.758 2.116 -2.421 H211 NR0 29 NR0 OXT O02 O 0 1 N Y N Y N Y 36.855 16.510 21.452 3.272 3.358 1.182 O02 NR0 30 NR0 H032 H032 H 0 0 N N N Y N N 38.727 18.643 22.296 3.510 0.620 1.522 H032 NR0 31 NR0 H031 H031 H 0 0 N N N Y N N 37.084 19.286 22.634 1.978 1.156 2.253 H031 NR0 32 NR0 H051 H051 H 0 0 N N N Y N N 38.813 16.786 25.438 1.811 -1.396 -1.052 H051 NR0 33 NR0 HA H061 H 0 0 N N N Y N N 40.155 18.997 23.807 3.465 -1.507 1.356 H061 NR0 34 NR0 H081 H081 H 0 0 N N N N N N 41.381 17.162 25.960 5.351 -0.535 0.358 H081 NR0 35 NR0 H082 H082 H 0 0 N N N N N N 42.240 18.241 24.809 5.534 -2.155 -0.380 H082 NR0 36 NR0 H H071 H 0 0 N N N Y Y N 40.414 19.957 25.962 3.890 -3.710 0.487 H071 NR0 37 NR0 H2 H2 H 0 1 N Y N Y Y N 38.827 19.693 25.681 2.287 -3.352 0.228 H2 NR0 38 NR0 H191 H191 H 0 0 N N N N N N 30.068 14.566 26.942 -6.310 -0.771 1.187 H191 NR0 39 NR0 H192 H192 H 0 0 N N N N N N 30.844 15.213 28.225 -7.047 0.397 0.230 H192 NR0 40 NR0 HXT H1 H 0 1 N Y N Y N Y 36.529 16.178 20.624 3.323 4.185 0.683 H1 NR0 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NR0 O C DOUB N N 1 NR0 C C03 SING N N 2 NR0 C03 N04 SING N N 3 NR0 C10 O09 SING N N 4 NR0 C10 C05 SING N N 5 NR0 N04 C05 SING N N 6 NR0 N04 C11 SING N N 7 NR0 O09 C08 SING N N 8 NR0 O23 C11 DOUB N N 9 NR0 C05 CA SING N N 10 NR0 C11 C12 SING N N 11 NR0 CA C08 SING N N 12 NR0 CA N SING N N 13 NR0 C21 N22 DOUB Y N 14 NR0 C21 N20 SING Y N 15 NR0 N22 C16 SING Y N 16 NR0 N20 C18 DOUB Y N 17 NR0 C12 N13 SING N N 18 NR0 C16 N13 SING Y N 19 NR0 C16 C17 DOUB Y N 20 NR0 N13 C14 SING Y N 21 NR0 C18 C17 SING Y N 22 NR0 C18 N19 SING N N 23 NR0 C17 N15 SING Y N 24 NR0 C14 N15 DOUB Y N 25 NR0 C10 H102 SING N N 26 NR0 C10 H101 SING N N 27 NR0 C12 H121 SING N N 28 NR0 C12 H122 SING N N 29 NR0 C14 H141 SING N N 30 NR0 C21 H211 SING N N 31 NR0 C OXT SING N N 32 NR0 C03 H032 SING N N 33 NR0 C03 H031 SING N N 34 NR0 C05 H051 SING N N 35 NR0 CA HA SING N N 36 NR0 C08 H081 SING N N 37 NR0 C08 H082 SING N N 38 NR0 N H SING N N 39 NR0 N H2 SING N N 40 NR0 N19 H191 SING N N 41 NR0 N19 H192 SING N N 42 NR0 OXT HXT SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NR0 SMILES ACDLabs 12.01 "OC(=O)CN(C1COCC1N)C(=O)Cn1cnc2c(N)ncnc21" NR0 InChI InChI 1.03 "InChI=1S/C13H17N7O4/c14-7-3-24-4-8(7)20(2-10(22)23)9(21)1-19-6-18-11-12(15)16-5-17-13(11)19/h5-8H,1-4,14H2,(H,22,23)(H2,15,16,17)/t7-,8-/m0/s1" NR0 InChIKey InChI 1.03 NDSRPVXXSCHUPN-YUMQZZPRSA-N NR0 SMILES_CANONICAL CACTVS 3.385 "N[C@H]1COC[C@@H]1N(CC(O)=O)C(=O)Cn2cnc3c(N)ncnc23" NR0 SMILES CACTVS 3.385 "N[CH]1COC[CH]1N(CC(O)=O)C(=O)Cn2cnc3c(N)ncnc23" NR0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)CC(=O)N(CC(=O)O)[C@H]3COC[C@@H]3N)N" NR0 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)CC(=O)N(CC(=O)O)C3COCC3N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NR0 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3R,4R)-4-aminooxolan-3-yl]-N-[(6-amino-9H-purin-9-yl)acetyl]glycine" NR0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[2-(6-aminopurin-9-yl)ethanoyl-[(3~{R},4~{R})-4-azanyloxolan-3-yl]amino]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NR0 "Create component" 2022-04-07 RCSB NR0 "Modify internal type" 2022-08-15 RCSB NR0 "Initial release" 2023-04-05 RCSB NR0 "Modify backbone" 2023-11-03 PDBE NR0 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NR0 _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #