data_NRB # _chem_comp.id NRB _chem_comp.name NARBOMYCIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H47 N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-11-29 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.675 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NRB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2C7X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NRB C1 C1 C 0 1 N N N -20.640 38.840 34.936 5.901 2.807 0.999 C1 NRB 1 NRB C2 C2 C 0 1 N N N -20.317 39.101 33.503 6.205 1.337 0.703 C2 NRB 2 NRB C3 C3 C 0 1 N N R -21.451 38.571 32.597 4.924 0.511 0.849 C3 NRB 3 NRB O1 O1 O 0 1 N N N -21.961 39.581 31.619 3.970 0.910 -0.168 O1 NRB 4 NRB C4 C4 C 0 1 N N N -23.118 40.350 31.747 3.055 1.860 0.075 C4 NRB 5 NRB O2 O2 O 0 1 N N N -23.858 40.239 32.716 3.059 2.455 1.127 O2 NRB 6 NRB C5 C5 C 0 1 N N R -23.456 41.360 30.650 2.002 2.190 -0.961 C5 NRB 7 NRB C6 C6 C 0 1 N N N -24.163 42.625 31.215 2.045 3.698 -1.236 C6 NRB 8 NRB C7 C7 C 0 1 N N N -24.349 40.743 29.564 0.649 1.820 -0.422 C7 NRB 9 NRB O3 O3 O 0 1 N N N -25.448 40.255 29.908 0.403 2.103 0.741 O3 NRB 10 NRB C8 C8 C 0 1 N N S -23.926 40.798 28.055 -0.417 1.132 -1.219 C8 NRB 11 NRB C9 C9 C 0 1 N N N -22.373 40.891 27.992 -0.146 1.105 -2.713 C9 NRB 12 NRB C10 C10 C 0 1 N N S -24.412 39.564 27.170 -0.768 -0.232 -0.651 C10 NRB 13 NRB O4 O4 O 0 1 N N N -23.428 39.198 26.119 -2.090 -0.592 -1.080 O4 NRB 14 NRB C11 C11 C 0 1 N N R -24.076 39.292 24.800 -2.995 -0.098 -0.090 C11 NRB 15 NRB O5 O5 O 0 1 N N N -25.554 39.158 24.848 -3.031 1.327 -0.150 O5 NRB 16 NRB C12 C12 C 0 1 N N S -26.068 38.968 23.510 -3.797 1.786 0.962 C12 NRB 17 NRB C13 C13 C 0 1 N N N -27.547 38.610 23.534 -3.705 3.311 1.048 C13 NRB 18 NRB C14 C14 C 0 1 N N N -25.838 40.236 22.712 -5.261 1.375 0.787 C14 NRB 19 NRB C15 C15 C 0 1 N N R -24.284 40.507 22.603 -5.347 -0.155 0.735 C15 NRB 20 NRB N1 N1 N 0 1 N N N -24.039 41.763 21.809 -6.723 -0.560 0.417 N1 NRB 21 NRB C16 C16 C 0 1 N N N -23.105 42.675 22.537 -6.762 -2.026 0.503 C16 NRB 22 NRB C17 C17 C 0 1 N N N -23.414 41.409 20.519 -7.575 -0.051 1.500 C17 NRB 23 NRB C18 C18 C 0 1 N N R -23.646 40.576 24.068 -4.393 -0.662 -0.352 C18 NRB 24 NRB O6 O6 O 0 1 N N N -24.146 41.728 24.783 -4.855 -0.230 -1.633 O6 NRB 25 NRB C19 C19 C 0 1 N N S -24.772 38.170 27.930 0.190 -1.363 -1.032 C19 NRB 26 NRB C20 C20 C 0 1 N N N -26.240 37.776 27.692 1.628 -0.865 -1.040 C20 NRB 27 NRB C21 C21 C 0 1 N N N -23.728 37.078 27.445 0.013 -2.488 -0.013 C21 NRB 28 NRB C22 C22 C 0 1 N N R -23.719 35.613 27.898 1.037 -3.607 -0.082 C22 NRB 29 NRB C23 C23 C 0 1 N N N -22.814 34.650 27.108 1.432 -3.976 -1.503 C23 NRB 30 NRB C24 C24 C 0 1 N N N -23.376 35.583 29.394 2.225 -3.309 0.786 C24 NRB 31 NRB O7 O7 O 0 1 N N N -24.162 35.031 30.157 2.205 -3.667 1.953 O7 NRB 32 NRB C25 C25 C 0 1 N N N -22.152 36.182 29.965 3.410 -2.610 0.292 C25 NRB 33 NRB C26 C26 C 0 1 N N N -22.129 36.683 31.196 4.085 -1.805 1.105 C26 NRB 34 NRB C27 C27 C 0 1 N N R -20.938 37.325 31.856 5.267 -0.977 0.692 C27 NRB 35 NRB C28 C28 C 0 1 N N N -19.822 37.746 30.834 5.679 -1.248 -0.751 C28 NRB 36 NRB H1C1 1H1C H 0 0 N N N -21.190 37.891 35.021 6.813 3.395 0.895 H1C1 NRB 37 NRB H1C2 2H1C H 0 0 N N N -21.260 39.660 35.327 5.151 3.171 0.296 H1C2 NRB 38 NRB H1C3 3H1C H 0 0 N N N -19.708 38.776 35.517 5.522 2.901 2.016 H1C3 NRB 39 NRB H2C1 1H2C H 0 0 N N N -19.380 38.586 33.246 6.584 1.242 -0.315 H2C1 NRB 40 NRB H2C2 2H2C H 0 0 N N N -20.205 40.184 33.348 6.954 0.972 1.405 H2C2 NRB 41 NRB H3 H3 H 0 1 N N N -22.306 38.326 33.244 4.497 0.676 1.838 H3 NRB 42 NRB H5 H5 H 0 1 N N N -22.492 41.655 30.209 2.232 1.655 -1.876 H5 NRB 43 NRB H6C1 1H6C H 0 0 N N N -25.130 42.762 30.708 3.032 3.972 -1.609 H6C1 NRB 44 NRB H6C2 2H6C H 0 0 N N N -23.530 43.507 31.041 1.291 3.952 -1.982 H6C2 NRB 45 NRB H6C3 3H6C H 0 0 N N N -24.330 42.501 32.295 1.841 4.242 -0.314 H6C3 NRB 46 NRB H8 H8 H 0 1 N N N -24.423 41.679 27.624 -1.338 1.760 -1.090 H8 NRB 47 NRB H9C1 1H9C H 0 0 N N N -21.933 40.016 28.493 0.840 0.676 -2.896 H9C1 NRB 48 NRB H9C2 2H9C H 0 0 N N N -22.040 41.809 28.497 -0.903 0.498 -3.209 H9C2 NRB 49 NRB H9C3 3H9C H 0 0 N N N -22.049 40.913 26.941 -0.178 2.121 -3.107 H9C3 NRB 50 NRB H10 H10 H 0 1 N N N -25.351 39.978 26.774 -0.789 -0.161 0.448 H10 NRB 51 NRB H11 H11 H 0 1 N N N -23.724 38.424 24.223 -2.657 -0.411 0.898 H11 NRB 52 NRB H12 H12 H 0 1 N N N -25.537 38.130 23.036 -3.404 1.347 1.879 H12 NRB 53 NRB H131 1H13 H 0 0 N N N -27.700 37.651 23.018 -4.096 3.751 0.130 H131 NRB 54 NRB H132 2H13 H 0 0 N N N -28.123 39.397 23.025 -4.291 3.663 1.897 H132 NRB 55 NRB H133 3H13 H 0 0 N N N -27.887 38.524 24.577 -2.664 3.605 1.177 H133 NRB 56 NRB H141 1H14 H 0 0 N N N -26.326 41.083 23.216 -5.846 1.745 1.629 H141 NRB 57 NRB H142 2H14 H 0 0 N N N -26.263 40.119 21.704 -5.649 1.794 -0.141 H142 NRB 58 NRB H15 H15 H 0 1 N N N -23.791 39.682 22.068 -5.058 -0.570 1.701 H15 NRB 59 NRB H161 1H16 H 0 0 N N N -22.762 42.187 23.461 -7.768 -2.377 0.273 H161 NRB 60 NRB H162 2H16 H 0 0 N N N -23.627 43.610 22.788 -6.057 -2.451 -0.212 H162 NRB 61 NRB H163 3H16 H 0 0 N N N -22.238 42.899 21.898 -6.489 -2.338 1.511 H163 NRB 62 NRB H171 1H17 H 0 0 N N N -22.886 40.449 20.619 -7.578 1.039 1.478 H171 NRB 63 NRB H172 2H17 H 0 0 N N N -22.698 42.193 20.231 -8.592 -0.420 1.366 H172 NRB 64 NRB H173 3H17 H 0 0 N N N -24.192 41.321 19.746 -7.187 -0.395 2.459 H173 NRB 65 NRB H18 H18 H 0 1 N N N -22.551 40.662 24.010 -4.356 -1.751 -0.326 H18 NRB 66 NRB H6 H6 H 0 1 N N N -24.256 41.509 25.701 -4.228 -0.570 -2.286 H6 NRB 67 NRB H19 H19 H 0 1 N N N -24.684 38.274 29.022 -0.079 -1.730 -2.026 H19 NRB 68 NRB H201 1H20 H 0 0 N N N -26.280 36.814 27.160 1.917 -0.570 -0.031 H201 NRB 69 NRB H202 2H20 H 0 0 N N N -26.734 38.550 27.087 2.286 -1.661 -1.389 H202 NRB 70 NRB H203 3H20 H 0 0 N N N -26.756 37.682 28.659 1.711 -0.007 -1.707 H203 NRB 71 NRB H211 1H21 H 0 0 N N N -22.803 37.448 27.912 0.042 -2.045 0.995 H211 NRB 72 NRB H212 2H21 H 0 0 N N N -23.861 37.031 26.354 -0.992 -2.915 -0.140 H212 NRB 73 NRB H22 H22 H 0 1 N N N -24.727 35.225 27.690 0.551 -4.511 0.355 H22 NRB 74 NRB H231 1H23 H 0 0 N N N -23.325 33.684 26.986 1.948 -3.136 -1.967 H231 NRB 75 NRB H232 2H23 H 0 0 N N N -21.872 34.500 27.656 2.093 -4.843 -1.483 H232 NRB 76 NRB H233 3H23 H 0 0 N N N -22.598 35.078 26.118 0.537 -4.216 -2.078 H233 NRB 77 NRB H25 H25 H 0 1 N N N -21.253 36.214 29.367 3.727 -2.786 -0.725 H25 NRB 78 NRB H26 H26 H 0 1 N N N -23.041 36.625 31.771 3.753 -1.742 2.145 H26 NRB 79 NRB H27 H27 H 0 1 N N N -20.474 36.595 32.536 6.112 -1.207 1.352 H27 NRB 80 NRB H281 1H28 H 0 0 N N N -19.034 36.979 30.815 4.848 -1.011 -1.417 H281 NRB 81 NRB H282 2H28 H 0 0 N N N -19.389 38.710 31.141 6.537 -0.627 -1.007 H282 NRB 82 NRB H283 3H28 H 0 0 N N N -20.261 37.844 29.830 5.945 -2.299 -0.862 H283 NRB 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NRB C1 C2 SING N N 1 NRB C1 H1C1 SING N N 2 NRB C1 H1C2 SING N N 3 NRB C1 H1C3 SING N N 4 NRB C2 C3 SING N N 5 NRB C2 H2C1 SING N N 6 NRB C2 H2C2 SING N N 7 NRB C3 O1 SING N N 8 NRB C3 C27 SING N N 9 NRB C3 H3 SING N N 10 NRB O1 C4 SING N N 11 NRB C4 O2 DOUB N N 12 NRB C4 C5 SING N N 13 NRB C5 C6 SING N N 14 NRB C5 C7 SING N N 15 NRB C5 H5 SING N N 16 NRB C6 H6C1 SING N N 17 NRB C6 H6C2 SING N N 18 NRB C6 H6C3 SING N N 19 NRB C7 O3 DOUB N N 20 NRB C7 C8 SING N N 21 NRB C8 C9 SING N N 22 NRB C8 C10 SING N N 23 NRB C8 H8 SING N N 24 NRB C9 H9C1 SING N N 25 NRB C9 H9C2 SING N N 26 NRB C9 H9C3 SING N N 27 NRB C10 O4 SING N N 28 NRB C10 C19 SING N N 29 NRB C10 H10 SING N N 30 NRB O4 C11 SING N N 31 NRB C11 O5 SING N N 32 NRB C11 C18 SING N N 33 NRB C11 H11 SING N N 34 NRB O5 C12 SING N N 35 NRB C12 C13 SING N N 36 NRB C12 C14 SING N N 37 NRB C12 H12 SING N N 38 NRB C13 H131 SING N N 39 NRB C13 H132 SING N N 40 NRB C13 H133 SING N N 41 NRB C14 C15 SING N N 42 NRB C14 H141 SING N N 43 NRB C14 H142 SING N N 44 NRB C15 N1 SING N N 45 NRB C15 C18 SING N N 46 NRB C15 H15 SING N N 47 NRB N1 C16 SING N N 48 NRB N1 C17 SING N N 49 NRB C16 H161 SING N N 50 NRB C16 H162 SING N N 51 NRB C16 H163 SING N N 52 NRB C17 H171 SING N N 53 NRB C17 H172 SING N N 54 NRB C17 H173 SING N N 55 NRB C18 O6 SING N N 56 NRB C18 H18 SING N N 57 NRB O6 H6 SING N N 58 NRB C19 C20 SING N N 59 NRB C19 C21 SING N N 60 NRB C19 H19 SING N N 61 NRB C20 H201 SING N N 62 NRB C20 H202 SING N N 63 NRB C20 H203 SING N N 64 NRB C21 C22 SING N N 65 NRB C21 H211 SING N N 66 NRB C21 H212 SING N N 67 NRB C22 C23 SING N N 68 NRB C22 C24 SING N N 69 NRB C22 H22 SING N N 70 NRB C23 H231 SING N N 71 NRB C23 H232 SING N N 72 NRB C23 H233 SING N N 73 NRB C24 O7 DOUB N N 74 NRB C24 C25 SING N N 75 NRB C25 C26 DOUB N E 76 NRB C25 H25 SING N N 77 NRB C26 C27 SING N N 78 NRB C26 H26 SING N N 79 NRB C27 C28 SING N N 80 NRB C27 H27 SING N N 81 NRB C28 H281 SING N N 82 NRB C28 H282 SING N N 83 NRB C28 H283 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NRB SMILES ACDLabs 10.04 "O=C2C(C(OC1OC(CC(N(C)C)C1O)C)C(C)CC(C(=O)C=CC(C)C(OC(=O)C2C)CC)C)C" NRB SMILES_CANONICAL CACTVS 3.341 "CC[C@H]1OC(=O)[C@H](C)C(=O)[C@@H](C)[C@@H](O[C@H]2O[C@@H](C)C[C@H]([C@H]2O)N(C)C)[C@@H](C)C[C@@H](C)C(=O)\C=C\[C@H]1C" NRB SMILES CACTVS 3.341 "CC[CH]1OC(=O)[CH](C)C(=O)[CH](C)[CH](O[CH]2O[CH](C)C[CH]([CH]2O)N(C)C)[CH](C)C[CH](C)C(=O)C=C[CH]1C" NRB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[C@@H]1[C@@H](\C=C\C(=O)[C@@H](C[C@@H]([C@@H]([C@@H](C(=O)[C@H](C(=O)O1)C)C)O[C@@H]2[C@@H]([C@@H](C[C@@H](O2)C)N(C)C)O)C)C)C" NRB SMILES "OpenEye OEToolkits" 1.5.0 "CCC1C(C=CC(=O)C(CC(C(C(C(=O)C(C(=O)O1)C)C)OC2C(C(CC(O2)C)N(C)C)O)C)C)C" NRB InChI InChI 1.03 "InChI=1S/C28H47NO7/c1-10-23-15(2)11-12-22(30)16(3)13-17(4)26(19(6)24(31)20(7)27(33)35-23)36-28-25(32)21(29(8)9)14-18(5)34-28/h11-12,15-21,23,25-26,28,32H,10,13-14H2,1-9H3/b12-11+/t15-,16-,17+,18+,19-,20-,21-,23-,25-,26+,28-/m1/s1" NRB InChIKey InChI 1.03 OXFYAOOMMKGGAI-ZMIJTAGNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NRB "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,5S,6S,7S,9R,11E,13R,14R)-14-ethyl-3,5,7,9,13-pentamethyl-2,4,10-trioxooxacyclotetradec-11-en-6-yl 3,4,6-trideoxy-3-(dimethylamino)-beta-L-lyxo-hexopyranoside" NRB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3R,5S,6S,7S,9R,11E,13R,14R)-6-[(2R,3R,4R,6S)-4-dimethylamino-3-hydroxy-6-methyl-oxan-2-yl]oxy-14-ethyl-3,5,7,9,13-pentamethyl-1-oxacyclotetradec-11-ene-2,4,10-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NRB "Create component" 2005-11-29 EBI NRB "Modify descriptor" 2011-06-04 RCSB #