data_NTL # _chem_comp.id NTL _chem_comp.name ;N-[(2S,3R)-2-{[(1R,2S,3S,4R,6S)-6-amino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-lyxopyranosyl]oxy}-4-(ethylamino) -2-hydroxycyclohexyl]oxy}-6-(aminomethyl)-3,4-dihydro-2H-pyran-3-yl]acetamide ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H43 N5 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms acetylated-netilmicin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-07 _chem_comp.pdbx_modified_date 2021-05-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 517.616 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NTL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VR3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NTL C01 C1 C 0 1 N N N 53.288 46.248 149.921 3.606 5.695 0.315 C01 NTL 1 NTL C02 C2 C 0 1 N N N 53.831 46.489 151.345 2.437 4.972 -0.356 C02 NTL 2 NTL C04 C3 C 0 1 N N R 55.911 46.345 152.804 1.065 2.978 -0.280 C04 NTL 3 NTL C05 C4 C 0 1 N N N 55.317 45.199 153.659 -0.255 3.485 0.303 C05 NTL 4 NTL C06 C5 C 0 1 N N S 55.815 45.099 155.132 -1.420 2.731 -0.341 C06 NTL 5 NTL C08 C6 C 0 1 N N R 55.673 46.476 155.896 -1.278 1.234 -0.057 C08 NTL 6 NTL C10 C7 C 0 1 N N S 55.775 47.308 158.180 -2.863 -0.555 0.129 C10 NTL 7 NTL C12 C8 C 0 1 N N N 53.469 46.868 158.694 -4.338 -0.913 1.962 C12 NTL 8 NTL C13 C9 C 0 1 N N N 52.010 47.185 158.244 -4.788 -0.511 3.343 C13 NTL 9 NTL C15 C10 C 0 1 N N N 53.859 45.696 159.125 -4.700 -2.084 1.508 C15 NTL 10 NTL C16 C11 C 0 1 N N N 55.195 45.463 159.773 -4.295 -2.584 0.148 C16 NTL 11 NTL C17 C12 C 0 1 N N R 56.128 46.702 159.574 -3.827 -1.405 -0.710 C17 NTL 12 NTL C19 C13 C 0 1 N N N 58.220 46.522 160.942 -5.682 -0.917 -2.214 C19 NTL 13 NTL C20 C14 C 0 1 N N N 59.727 46.281 161.121 -6.869 -0.084 -2.624 C20 NTL 14 NTL C22 C15 C 0 1 N N S 56.347 47.654 155.012 0.042 0.727 -0.640 C22 NTL 15 NTL C24 C16 C 0 1 N N S 55.719 47.746 153.537 1.207 1.481 0.004 C24 NTL 16 NTL C26 C17 C 0 1 N N R 55.613 49.900 152.445 3.010 -0.090 0.175 C26 NTL 17 NTL C28 C18 C 0 1 N N N 57.348 51.416 153.091 2.677 -2.413 0.671 C28 NTL 18 NTL C29 C19 C 0 1 N N R 57.611 52.095 151.733 4.084 -2.768 0.181 C29 NTL 19 NTL C30 C20 C 0 1 N N N 59.076 52.270 151.477 4.034 -3.115 -1.309 C30 NTL 20 NTL C32 C21 C 0 1 N N S 57.007 51.235 150.483 5.009 -1.567 0.396 C32 NTL 21 NTL C34 C22 C 0 1 N N N 58.687 49.286 150.017 7.374 -1.061 0.521 C34 NTL 22 NTL C35 C23 C 0 1 N N R 55.738 50.273 150.860 4.429 -0.352 -0.335 C35 NTL 23 NTL N03 N1 N 0 1 N N N 55.308 46.359 151.438 2.184 3.702 0.338 N03 NTL 24 NTL N07 N2 N 0 1 N N N 55.079 44.020 155.873 -2.688 3.217 0.220 N07 NTL 25 NTL N14 N3 N 0 1 N N N 51.686 47.180 156.804 -3.618 -0.379 4.221 N14 NTL 26 NTL N18 N4 N 0 1 N N N 57.557 46.502 159.727 -4.981 -0.594 -1.109 N18 NTL 27 NTL N33 N5 N 0 1 N N N 58.031 50.544 149.539 6.343 -1.872 -0.141 N33 NTL 28 NTL O09 O1 O 0 1 N N N 56.269 46.355 157.207 -2.366 0.530 -0.658 O09 NTL 29 NTL O11 O2 O 0 1 N N N 54.430 47.788 158.156 -3.580 -0.045 1.256 O11 NTL 30 NTL O21 O3 O 0 1 N N N 57.550 46.760 161.948 -5.357 -1.879 -2.878 O21 NTL 31 NTL O23 O4 O 0 1 N N N 56.071 48.892 155.590 0.175 -0.671 -0.375 O23 NTL 32 NTL O25 O5 O 0 1 N N N 56.350 48.756 152.822 2.441 1.008 -0.541 O25 NTL 33 NTL O27 O6 O 0 1 N N N 56.038 50.952 153.225 2.209 -1.257 -0.026 O27 NTL 34 NTL O31 O7 O 0 1 N N N 57.023 53.350 151.618 4.576 -3.890 0.916 O31 NTL 35 NTL O36 O8 O 0 1 N N N 55.773 49.055 150.170 4.391 -0.612 -1.739 O36 NTL 36 NTL H1 H1 H 0 1 N N N 52.194 46.359 149.922 3.360 5.894 1.359 H1 NTL 37 NTL H2 H2 H 0 1 N N N 53.730 46.982 149.231 4.497 5.070 0.266 H2 NTL 38 NTL H3 H3 H 0 1 N N N 53.553 45.232 149.595 3.794 6.638 -0.199 H3 NTL 39 NTL H4 H4 H 0 1 N N N 53.549 47.505 151.659 1.546 5.597 -0.306 H4 NTL 40 NTL H5 H5 H 0 1 N N N 53.372 45.754 152.023 2.684 4.773 -1.399 H5 NTL 41 NTL H6 H6 H 0 1 N N N 56.993 46.170 152.708 1.075 3.146 -1.357 H6 NTL 42 NTL H7 H7 H 0 1 N N N 54.225 45.332 153.684 -0.265 3.317 1.380 H7 NTL 43 NTL H8 H8 H 0 1 N N N 55.559 44.249 153.159 -0.356 4.551 0.101 H8 NTL 44 NTL H9 H9 H 0 1 N N N 56.884 44.841 155.109 -1.411 2.899 -1.418 H9 NTL 45 NTL H10 H10 H 0 1 N N N 54.601 46.704 155.993 -1.288 1.066 1.020 H10 NTL 46 NTL H11 H11 H 0 1 N N N 56.419 48.195 158.088 -2.031 -1.172 0.470 H11 NTL 47 NTL H13 H13 H 0 1 N N N 51.766 48.188 158.625 -5.312 0.444 3.290 H13 NTL 48 NTL H14 H14 H 0 1 N N N 51.356 46.441 158.724 -5.458 -1.272 3.742 H14 NTL 49 NTL H15 H15 H 0 1 N N N 53.190 44.856 159.010 -5.313 -2.717 2.133 H15 NTL 50 NTL H17 H17 H 0 1 N N N 55.049 45.290 160.849 -3.483 -3.304 0.253 H17 NTL 51 NTL H18 H18 H 0 1 N N N 55.667 44.579 159.320 -5.148 -3.066 -0.330 H18 NTL 52 NTL H19 H19 H 0 1 N N N 55.815 47.446 160.322 -3.314 -1.775 -1.598 H19 NTL 53 NTL H20 H20 H 0 1 N N N 59.988 46.364 162.186 -7.770 -0.481 -2.157 H20 NTL 54 NTL H21 H21 H 0 1 N N N 59.983 45.275 160.758 -6.717 0.947 -2.302 H21 NTL 55 NTL H22 H22 H 0 1 N N N 60.289 47.032 160.546 -6.977 -0.114 -3.708 H22 NTL 56 NTL H23 H23 H 0 1 N N N 57.428 47.466 154.932 0.052 0.895 -1.717 H23 NTL 57 NTL H24 H24 H 0 1 N N N 54.641 47.942 153.634 1.198 1.313 1.081 H24 NTL 58 NTL H25 H25 H 0 1 N N N 54.545 49.714 152.634 3.043 0.148 1.239 H25 NTL 59 NTL H26 H26 H 0 1 N N N 58.034 50.563 153.195 2.004 -3.249 0.481 H26 NTL 60 NTL H27 H27 H 0 1 N N N 57.545 52.145 153.891 2.707 -2.205 1.740 H27 NTL 61 NTL H28 H28 H 0 1 N N N 59.526 52.847 152.298 3.501 -2.331 -1.847 H28 NTL 62 NTL H29 H29 H 0 1 N N N 59.558 51.283 151.415 5.049 -3.197 -1.697 H29 NTL 63 NTL H30 H30 H 0 1 N N N 59.221 52.808 150.529 3.515 -4.064 -1.443 H30 NTL 64 NTL H31 H31 H 0 1 N N N 56.550 52.009 149.849 5.084 -1.350 1.461 H31 NTL 65 NTL H32 H32 H 0 1 N N N 59.380 48.918 149.246 7.165 -0.004 0.358 H32 NTL 66 NTL H33 H33 H 0 1 N N N 59.244 49.492 150.943 7.371 -1.272 1.590 H33 NTL 67 NTL H34 H34 H 0 1 N N N 57.919 48.524 150.214 8.351 -1.307 0.105 H34 NTL 68 NTL H35 H35 H 0 1 N N N 54.827 50.827 150.590 5.052 0.521 -0.141 H35 NTL 69 NTL H36 H36 H 0 1 N N N 55.563 45.503 150.989 3.015 3.131 0.362 H36 NTL 70 NTL H38 H38 H 0 1 N N N 55.414 43.973 156.814 -2.805 4.204 0.045 H38 NTL 71 NTL H39 H39 H 0 1 N N N 54.101 44.227 155.877 -3.469 2.691 -0.142 H39 NTL 72 NTL H41 H41 H 0 1 N N N 50.719 47.400 156.679 -2.951 0.274 3.838 H41 NTL 73 NTL H42 H42 H 0 1 N N N 52.246 47.862 156.334 -3.894 -0.109 5.153 H42 NTL 74 NTL H44 H44 H 0 1 N N N 58.098 46.339 158.902 -5.240 0.175 -0.577 H44 NTL 75 NTL H45 H45 H 0 1 N N N 58.757 51.206 149.352 6.368 -1.743 -1.141 H45 NTL 76 NTL H47 H47 H 0 1 N N N 56.416 48.913 156.475 -0.478 -1.221 -0.828 H47 NTL 77 NTL H48 H48 H 0 1 N N N 57.332 53.910 152.320 4.035 -4.686 0.829 H48 NTL 78 NTL H49 H49 H 0 1 N N N 55.022 48.529 150.417 4.034 0.117 -2.265 H49 NTL 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NTL N33 C34 SING N N 1 NTL N33 C32 SING N N 2 NTL C01 C02 SING N N 3 NTL O36 C35 SING N N 4 NTL C32 C35 SING N N 5 NTL C32 C29 SING N N 6 NTL C35 C26 SING N N 7 NTL C02 N03 SING N N 8 NTL N03 C04 SING N N 9 NTL C30 C29 SING N N 10 NTL O31 C29 SING N N 11 NTL C29 C28 SING N N 12 NTL C26 O25 SING N N 13 NTL C26 O27 SING N N 14 NTL C04 C24 SING N N 15 NTL C04 C05 SING N N 16 NTL O25 C24 SING N N 17 NTL C28 O27 SING N N 18 NTL C24 C22 SING N N 19 NTL C05 C06 SING N N 20 NTL C22 O23 SING N N 21 NTL C22 C08 SING N N 22 NTL C06 N07 SING N N 23 NTL C06 C08 SING N N 24 NTL C08 O09 SING N N 25 NTL N14 C13 SING N N 26 NTL O09 C10 SING N N 27 NTL O11 C10 SING N N 28 NTL O11 C12 SING N N 29 NTL C10 C17 SING N N 30 NTL C13 C12 SING N N 31 NTL C12 C15 DOUB N N 32 NTL C15 C16 SING N N 33 NTL C17 N18 SING N N 34 NTL C17 C16 SING N N 35 NTL N18 C19 SING N N 36 NTL C19 C20 SING N N 37 NTL C19 O21 DOUB N N 38 NTL C01 H1 SING N N 39 NTL C01 H2 SING N N 40 NTL C01 H3 SING N N 41 NTL C02 H4 SING N N 42 NTL C02 H5 SING N N 43 NTL C04 H6 SING N N 44 NTL C05 H7 SING N N 45 NTL C05 H8 SING N N 46 NTL C06 H9 SING N N 47 NTL C08 H10 SING N N 48 NTL C10 H11 SING N N 49 NTL C13 H13 SING N N 50 NTL C13 H14 SING N N 51 NTL C15 H15 SING N N 52 NTL C16 H17 SING N N 53 NTL C16 H18 SING N N 54 NTL C17 H19 SING N N 55 NTL C20 H20 SING N N 56 NTL C20 H21 SING N N 57 NTL C20 H22 SING N N 58 NTL C22 H23 SING N N 59 NTL C24 H24 SING N N 60 NTL C26 H25 SING N N 61 NTL C28 H26 SING N N 62 NTL C28 H27 SING N N 63 NTL C30 H28 SING N N 64 NTL C30 H29 SING N N 65 NTL C30 H30 SING N N 66 NTL C32 H31 SING N N 67 NTL C34 H32 SING N N 68 NTL C34 H33 SING N N 69 NTL C34 H34 SING N N 70 NTL C35 H35 SING N N 71 NTL N03 H36 SING N N 72 NTL N07 H38 SING N N 73 NTL N07 H39 SING N N 74 NTL N14 H41 SING N N 75 NTL N14 H42 SING N N 76 NTL N18 H44 SING N N 77 NTL N33 H45 SING N N 78 NTL O23 H47 SING N N 79 NTL O31 H48 SING N N 80 NTL O36 H49 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NTL SMILES ACDLabs 12.01 "CCNC1C(C(C(C(C1)N)OC2C(CC=C(CN)O2)NC(C)=O)O)OC3OCC(C)(C(C3O)NC)O" NTL InChI InChI 1.03 "InChI=1S/C23H43N5O8/c1-5-27-15-8-13(25)18(35-21-14(28-11(2)29)7-6-12(9-24)34-21)16(30)19(15)36-22-17(31)20(26-4)23(3,32)10-33-22/h6,13-22,26-27,30-32H,5,7-10,24-25H2,1-4H3,(H,28,29)/t13-,14+,15+,16-,17+,18+,19-,20-,21+,22+,23-/m0/s1" NTL InChIKey InChI 1.03 GQIIPKQUZXGMPH-PWAQZHRDSA-N NTL SMILES_CANONICAL CACTVS 3.385 "CCN[C@@H]1C[C@H](N)[C@@H](O[C@H]2OC(=CC[C@H]2NC(C)=O)CN)[C@H](O)[C@H]1O[C@H]3OC[C@](C)(O)[C@@H](NC)[C@H]3O" NTL SMILES CACTVS 3.385 "CCN[CH]1C[CH](N)[CH](O[CH]2OC(=CC[CH]2NC(C)=O)CN)[CH](O)[CH]1O[CH]3OC[C](C)(O)[CH](NC)[CH]3O" NTL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN[C@@H]1C[C@@H]([C@H]([C@@H]([C@H]1O[C@@H]2[C@@H]([C@@H]([C@@](CO2)(C)O)NC)O)O)O[C@@H]3[C@@H](CC=C(O3)CN)NC(=O)C)N" NTL SMILES "OpenEye OEToolkits" 2.0.7 "CCNC1CC(C(C(C1OC2C(C(C(CO2)(C)O)NC)O)O)OC3C(CC=C(O3)CN)NC(=O)C)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NTL "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S,3R)-2-{[(1R,2S,3S,4R,6S)-6-amino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-lyxopyranosyl]oxy}-4-(ethylamino)-2-hydroxycyclohexyl]oxy}-6-(aminomethyl)-3,4-dihydro-2H-pyran-3-yl]acetamide" NTL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S},3~{R})-6-(aminomethyl)-2-[(1~{R},2~{S},3~{S},4~{R},6~{S})-6-azanyl-4-(ethylamino)-3-[(2~{R},3~{R},4~{S},5~{R})-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-3,4-dihydro-2~{H}-pyran-3-yl]ethanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NTL _pdbx_chem_comp_synonyms.name acetylated-netilmicin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NTL "Create component" 2020-02-07 RCSB NTL "Modify formula" 2020-02-07 RCSB NTL "Modify synonyms" 2020-06-05 PDBE NTL "Initial release" 2021-06-02 RCSB ##