data_NUP # _chem_comp.id NUP _chem_comp.name ;6-AMINOURIDINE 5'-MONOPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N3 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-06-28 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 339.196 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NUP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NUP O4 O4 O 0 1 N N N 20.764 -8.029 -11.513 -4.952 -2.875 0.352 O4 NUP 1 NUP C4 C4 C 0 1 N N N 21.720 -8.615 -12.020 -4.125 -2.000 0.162 C4 NUP 2 NUP N2 N2 N 0 1 N N N 22.707 -7.842 -12.476 -2.953 -2.018 0.829 N2 NUP 3 NUP C2 C2 C 0 1 N N N 23.800 -8.371 -13.045 -2.035 -1.055 0.625 C2 NUP 4 NUP O2 O2 O 0 1 N N N 24.698 -7.604 -13.443 -0.985 -1.090 1.237 O2 NUP 5 NUP C5 C5 C 0 1 N N N 21.747 -10.011 -12.081 -4.384 -0.970 -0.756 C5 NUP 6 NUP C6 C6 C 0 1 N N N 22.862 -10.578 -12.670 -3.440 -0.001 -0.951 C6 NUP 7 NUP N3 N3 N 0 1 N N N 22.915 -11.917 -12.729 -3.668 1.017 -1.841 N3 NUP 8 NUP N1 N1 N 0 1 N N N 23.912 -9.774 -13.174 -2.262 -0.055 -0.246 N1 NUP 9 NUP "C1'" C1* C 0 1 N N R 25.112 -10.361 -13.787 -1.244 0.979 -0.448 "C1'" NUP 10 NUP "O4'" O4* O 0 1 N N N 26.248 -10.145 -12.933 0.062 0.385 -0.599 "O4'" NUP 11 NUP "C2'" C2* C 0 1 N N R 25.476 -9.778 -15.157 -1.098 1.857 0.822 "C2'" NUP 12 NUP "O2'" O2* O 0 1 N N N 24.851 -10.349 -16.321 -2.046 2.926 0.814 "O2'" NUP 13 NUP "C3'" C3* C 0 1 N N S 26.977 -9.986 -15.149 0.345 2.396 0.679 "C3'" NUP 14 NUP "O3'" O3* O 0 1 N N N 27.258 -11.341 -15.535 0.335 3.710 0.117 "O3'" NUP 15 NUP "C4'" C4* C 0 1 N N R 27.381 -9.748 -13.693 1.026 1.404 -0.284 "C4'" NUP 16 NUP "C5'" C5* C 0 1 N N N 27.756 -8.290 -13.408 2.245 0.775 0.394 "C5'" NUP 17 NUP "O5'" O5* O 0 1 N N N 28.992 -8.028 -14.071 2.927 -0.067 -0.538 "O5'" NUP 18 NUP P P P 0 1 N N N 29.753 -6.600 -14.026 4.259 -0.891 -0.164 P NUP 19 NUP O1P O1P O 0 1 N N N 30.681 -6.752 -15.187 5.283 0.039 0.362 O1P NUP 20 NUP O2P O2P O 0 1 N N N 28.650 -5.568 -14.101 3.911 -1.995 0.955 O2P NUP 21 NUP O3P O3P O 0 1 N N N 30.504 -6.623 -12.704 4.824 -1.623 -1.482 O3P NUP 22 NUP HN2 HN2 H 0 1 N N N 22.630 -6.849 -12.392 -2.770 -2.730 1.461 HN2 NUP 23 NUP H5 H5 H 0 1 N N N 20.941 -10.614 -11.689 -5.316 -0.944 -1.300 H5 NUP 24 NUP HN31 1HN3 H 0 0 N N N 22.928 -12.209 -13.685 -4.451 0.996 -2.412 HN31 NUP 25 NUP HN32 2HN3 H 0 0 N N N 23.744 -12.238 -12.271 -3.045 1.759 -1.899 HN32 NUP 26 NUP "H1'" H1* H 0 1 N N N 24.870 -11.426 -13.921 -1.491 1.595 -1.313 "H1'" NUP 27 NUP "H2'" H2* H 0 1 N N N 25.115 -8.744 -15.259 -1.202 1.254 1.724 "H2'" NUP 28 NUP "HO2'" HO2* H 0 0 N N N 23.924 -10.475 -16.154 -1.994 3.503 1.588 "HO2'" NUP 29 NUP "H3'" H3* H 0 1 N N N 27.518 -9.323 -15.840 0.849 2.400 1.645 "H3'" NUP 30 NUP "HO3'" HO3* H 0 0 N N N 27.320 -11.395 -16.481 -0.132 4.364 0.654 "HO3'" NUP 31 NUP "H4'" H4* H 0 1 N N N 28.285 -10.320 -13.437 1.331 1.920 -1.194 "H4'" NUP 32 NUP "H5'1" 1H5* H 0 0 N N N 26.973 -7.617 -13.787 2.919 1.562 0.732 "H5'1" NUP 33 NUP "H5'2" 2H5* H 0 0 N N N 27.854 -8.121 -12.326 1.920 0.182 1.249 "H5'2" NUP 34 NUP HO2P HO2P H 0 0 N N N 28.358 -5.352 -13.223 3.245 -2.639 0.679 HO2P NUP 35 NUP HO3P HO3P H 0 0 N N N 31.439 -6.628 -12.871 5.628 -2.139 -1.330 HO3P NUP 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NUP O4 C4 DOUB N N 1 NUP C4 N2 SING N N 2 NUP C4 C5 SING N N 3 NUP N2 C2 SING N N 4 NUP N2 HN2 SING N N 5 NUP C2 O2 DOUB N N 6 NUP C2 N1 SING N N 7 NUP C5 C6 DOUB N N 8 NUP C5 H5 SING N N 9 NUP C6 N1 SING N N 10 NUP C6 N3 SING N N 11 NUP N3 HN31 SING N N 12 NUP N3 HN32 SING N N 13 NUP N1 "C1'" SING N N 14 NUP "C1'" "C2'" SING N N 15 NUP "C1'" "O4'" SING N N 16 NUP "C1'" "H1'" SING N N 17 NUP "O4'" "C4'" SING N N 18 NUP "C2'" "O2'" SING N N 19 NUP "C2'" "C3'" SING N N 20 NUP "C2'" "H2'" SING N N 21 NUP "O2'" "HO2'" SING N N 22 NUP "C3'" "O3'" SING N N 23 NUP "C3'" "C4'" SING N N 24 NUP "C3'" "H3'" SING N N 25 NUP "O3'" "HO3'" SING N N 26 NUP "C4'" "C5'" SING N N 27 NUP "C4'" "H4'" SING N N 28 NUP "C5'" "O5'" SING N N 29 NUP "C5'" "H5'1" SING N N 30 NUP "C5'" "H5'2" SING N N 31 NUP "O5'" P SING N N 32 NUP P O1P DOUB N N 33 NUP P O2P SING N N 34 NUP P O3P SING N N 35 NUP O2P HO2P SING N N 36 NUP O3P HO3P SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NUP SMILES ACDLabs 10.04 "O=C1NC(=O)N(C(N)=C1)C2OC(C(O)C2O)COP(=O)(O)O" NUP SMILES_CANONICAL CACTVS 3.341 "NC1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" NUP SMILES CACTVS 3.341 "NC1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" NUP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N" NUP SMILES "OpenEye OEToolkits" 1.5.0 "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)N" NUP InChI InChI 1.03 "InChI=1S/C9H14N3O9P/c10-4-1-5(13)11-9(16)12(4)8-7(15)6(14)3(21-8)2-20-22(17,18)19/h1,3,6-8,14-15H,2,10H2,(H,11,13,16)(H2,17,18,19)/t3-,6-,7-,8-/m1/s1" NUP InChIKey InChI 1.03 DUFXRFNPGXQQOI-YXZULKJRSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NUP "SYSTEMATIC NAME" ACDLabs 10.04 ;6-aminouridine 5'-(dihydrogen phosphate) ; NUP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-amino-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NUP "Create component" 2007-06-28 RCSB NUP "Modify descriptor" 2011-06-04 RCSB #