data_NVA # _chem_comp.id NVA _chem_comp.name NORVALINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H11 N O2" _chem_comp.mon_nstd_parent_comp_id VAL _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces 2PI _chem_comp.formula_weight 117.146 _chem_comp.one_letter_code V _chem_comp.three_letter_code NVA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1B6H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NVA N N N 0 1 N N N Y Y N 5.052 19.622 15.370 -1.741 0.351 -0.140 N NVA 1 NVA CA CA C 0 1 N N S Y N N 3.957 20.256 16.086 -0.286 0.521 -0.257 CA NVA 2 NVA CB CB C 0 1 N N N N N N 4.313 21.718 16.419 0.406 -0.225 0.884 CB NVA 3 NVA CG CG C 0 1 N N N N N N 5.354 21.645 17.583 -0.067 0.339 2.225 CG NVA 4 NVA CD CD C 0 1 N N N N N N 5.527 22.988 18.243 0.626 -0.406 3.366 CD NVA 5 NVA C C C 0 1 N N N Y N Y 2.649 20.239 15.314 0.179 -0.035 -1.577 C NVA 6 NVA O O O 0 1 N N N Y N Y 2.621 20.539 14.126 -0.413 -0.955 -2.088 O NVA 7 NVA OXT OXT O 0 1 N Y N Y N Y 1.578 19.885 16.021 1.254 0.490 -2.185 OXT NVA 8 NVA H 1HN H 0 1 N N N Y Y N 4.816 18.654 15.149 -1.993 0.640 0.793 H NVA 9 NVA H2 2HN H 0 1 N Y N Y Y N 5.932 19.692 15.880 -1.923 -0.639 -0.196 H2 NVA 10 NVA HA HA H 0 1 N N N Y N N 3.810 19.660 17.017 -0.038 1.581 -0.201 HA NVA 11 NVA HB2 1HB H 0 1 N N N N N N 4.667 22.303 15.538 1.485 -0.099 0.798 HB2 NVA 12 NVA HB3 2HB H 0 1 N N N N N N 3.425 22.352 16.651 0.158 -1.285 0.829 HB3 NVA 13 NVA HG2 1HG H 0 1 N N N N N N 5.086 20.855 18.323 -1.146 0.214 2.311 HG2 NVA 14 NVA HG3 2HG H 0 1 N N N N N N 6.328 21.230 17.235 0.180 1.399 2.280 HG3 NVA 15 NVA HD1 1HD H 0 1 N N N N N N 6.269 22.935 19.073 0.288 -0.004 4.321 HD1 NVA 16 NVA HD2 2HD H 0 1 N N N N N N 5.794 23.777 17.502 0.378 -1.466 3.311 HD2 NVA 17 NVA HD3 3HD H 0 1 N N N N N N 4.552 23.403 18.590 1.705 -0.281 3.280 HD3 NVA 18 NVA HXT HXT H 0 1 N Y N Y N Y 0.759 19.874 15.538 1.553 0.133 -3.033 HXT NVA 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NVA N CA SING N N 1 NVA N H SING N N 2 NVA N H2 SING N N 3 NVA CA CB SING N N 4 NVA CA C SING N N 5 NVA CA HA SING N N 6 NVA CB CG SING N N 7 NVA CB HB2 SING N N 8 NVA CB HB3 SING N N 9 NVA CG CD SING N N 10 NVA CG HG2 SING N N 11 NVA CG HG3 SING N N 12 NVA CD HD1 SING N N 13 NVA CD HD2 SING N N 14 NVA CD HD3 SING N N 15 NVA C O DOUB N N 16 NVA C OXT SING N N 17 NVA OXT HXT SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NVA SMILES ACDLabs 10.04 "O=C(O)C(N)CCC" NVA SMILES_CANONICAL CACTVS 3.341 "CCC[C@H](N)C(O)=O" NVA SMILES CACTVS 3.341 "CCC[CH](N)C(O)=O" NVA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCC[C@@H](C(=O)O)N" NVA SMILES "OpenEye OEToolkits" 1.5.0 "CCCC(C(=O)O)N" NVA InChI InChI 1.03 "InChI=1S/C5H11NO2/c1-2-3-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1" NVA InChIKey InChI 1.03 SNDPXSYFESPGGJ-BYPYZUCNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NVA "SYSTEMATIC NAME" ACDLabs 10.04 L-norvaline NVA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-aminopentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NVA "Create component" 1999-07-08 RCSB NVA "Modify descriptor" 2011-06-04 RCSB NVA "Modify backbone" 2023-11-03 PDBE NVA "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NVA _pdbx_chem_comp_pcm.modified_residue_id VAL _pdbx_chem_comp_pcm.type Norvaline _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #