data_NVA
# 
_chem_comp.id                                    NVA 
_chem_comp.name                                  NORVALINE 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C5 H11 N O2" 
_chem_comp.mon_nstd_parent_comp_id               VAL 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         2PI 
_chem_comp.formula_weight                        117.146 
_chem_comp.one_letter_code                       V 
_chem_comp.three_letter_code                     NVA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1B6H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NVA N   N   N 0 1 N N N Y Y N 5.052 19.622 15.370 -1.741 0.351  -0.140 N   NVA 1  
NVA CA  CA  C 0 1 N N S Y N N 3.957 20.256 16.086 -0.286 0.521  -0.257 CA  NVA 2  
NVA CB  CB  C 0 1 N N N N N N 4.313 21.718 16.419 0.406  -0.225 0.884  CB  NVA 3  
NVA CG  CG  C 0 1 N N N N N N 5.354 21.645 17.583 -0.067 0.339  2.225  CG  NVA 4  
NVA CD  CD  C 0 1 N N N N N N 5.527 22.988 18.243 0.626  -0.406 3.366  CD  NVA 5  
NVA C   C   C 0 1 N N N Y N Y 2.649 20.239 15.314 0.179  -0.035 -1.577 C   NVA 6  
NVA O   O   O 0 1 N N N Y N Y 2.621 20.539 14.126 -0.413 -0.955 -2.088 O   NVA 7  
NVA OXT OXT O 0 1 N Y N Y N Y 1.578 19.885 16.021 1.254  0.490  -2.185 OXT NVA 8  
NVA H   1HN H 0 1 N N N Y Y N 4.816 18.654 15.149 -1.993 0.640  0.793  H   NVA 9  
NVA H2  2HN H 0 1 N Y N Y Y N 5.932 19.692 15.880 -1.923 -0.639 -0.196 H2  NVA 10 
NVA HA  HA  H 0 1 N N N Y N N 3.810 19.660 17.017 -0.038 1.581  -0.201 HA  NVA 11 
NVA HB2 1HB H 0 1 N N N N N N 4.667 22.303 15.538 1.485  -0.099 0.798  HB2 NVA 12 
NVA HB3 2HB H 0 1 N N N N N N 3.425 22.352 16.651 0.158  -1.285 0.829  HB3 NVA 13 
NVA HG2 1HG H 0 1 N N N N N N 5.086 20.855 18.323 -1.146 0.214  2.311  HG2 NVA 14 
NVA HG3 2HG H 0 1 N N N N N N 6.328 21.230 17.235 0.180  1.399  2.280  HG3 NVA 15 
NVA HD1 1HD H 0 1 N N N N N N 6.269 22.935 19.073 0.288  -0.004 4.321  HD1 NVA 16 
NVA HD2 2HD H 0 1 N N N N N N 5.794 23.777 17.502 0.378  -1.466 3.311  HD2 NVA 17 
NVA HD3 3HD H 0 1 N N N N N N 4.552 23.403 18.590 1.705  -0.281 3.280  HD3 NVA 18 
NVA HXT HXT H 0 1 N Y N Y N Y 0.759 19.874 15.538 1.553  0.133  -3.033 HXT NVA 19 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NVA N   CA  SING N N 1  
NVA N   H   SING N N 2  
NVA N   H2  SING N N 3  
NVA CA  CB  SING N N 4  
NVA CA  C   SING N N 5  
NVA CA  HA  SING N N 6  
NVA CB  CG  SING N N 7  
NVA CB  HB2 SING N N 8  
NVA CB  HB3 SING N N 9  
NVA CG  CD  SING N N 10 
NVA CG  HG2 SING N N 11 
NVA CG  HG3 SING N N 12 
NVA CD  HD1 SING N N 13 
NVA CD  HD2 SING N N 14 
NVA CD  HD3 SING N N 15 
NVA C   O   DOUB N N 16 
NVA C   OXT SING N N 17 
NVA OXT HXT SING N N 18 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NVA SMILES           ACDLabs              10.04 "O=C(O)C(N)CCC"                                                        
NVA SMILES_CANONICAL CACTVS               3.341 "CCC[C@H](N)C(O)=O"                                                    
NVA SMILES           CACTVS               3.341 "CCC[CH](N)C(O)=O"                                                     
NVA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCC[C@@H](C(=O)O)N"                                                   
NVA SMILES           "OpenEye OEToolkits" 1.5.0 "CCCC(C(=O)O)N"                                                        
NVA InChI            InChI                1.03  "InChI=1S/C5H11NO2/c1-2-3-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1" 
NVA InChIKey         InChI                1.03  SNDPXSYFESPGGJ-BYPYZUCNSA-N                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NVA "SYSTEMATIC NAME" ACDLabs              10.04 L-norvaline                  
NVA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-aminopentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NVA "Create component"  1999-07-08 RCSB 
NVA "Modify descriptor" 2011-06-04 RCSB 
NVA "Modify backbone"   2023-11-03 PDBE 
NVA "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            NVA 
_pdbx_chem_comp_pcm.modified_residue_id                VAL 
_pdbx_chem_comp_pcm.type                               Norvaline 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#