data_NX8 # _chem_comp.id NX8 _chem_comp.name "(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)-~{N}-(piperidin-4-ylmethyl)oxolane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H23 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-02 _chem_comp.pdbx_modified_date 2020-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.398 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NX8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TTX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NX8 C4 C1 C 0 1 Y N N 10.033 -16.865 -11.556 4.175 -0.181 -0.260 C4 NX8 1 NX8 C5 C2 C 0 1 Y N N 9.596 -15.964 -12.493 5.034 0.873 0.094 C5 NX8 2 NX8 C6 C3 C 0 1 Y N N 9.306 -14.649 -12.072 6.417 0.624 0.112 C6 NX8 3 NX8 C8 C4 C 0 1 Y N N 9.950 -17.910 -13.526 3.006 1.635 0.181 C8 NX8 4 NX8 N1 N1 N 0 1 Y N N 9.472 -14.349 -10.776 6.845 -0.593 -0.206 N1 NX8 5 NX8 N3 N2 N 0 1 Y N N 10.172 -16.490 -10.256 4.696 -1.365 -0.563 N3 NX8 6 NX8 C2 C5 C 0 1 Y N N 9.883 -15.257 -9.899 5.999 -1.552 -0.533 C2 NX8 7 NX8 CAG C6 C 0 1 N N N 16.182 -23.993 -17.297 -7.859 0.507 0.858 CAG NX8 8 NX8 CAH C7 C 0 1 N N N 16.711 -24.438 -14.907 -7.089 -1.170 -0.713 CAH NX8 9 NX8 CAI C8 C 0 1 N N N 15.996 -22.611 -16.684 -6.568 1.312 0.687 CAI NX8 10 NX8 CAJ C9 C 0 1 N N N 15.469 -23.630 -14.489 -5.776 -0.416 -0.931 CAJ NX8 11 NX8 CAK C10 C 0 1 N N N 14.987 -21.216 -14.899 -4.140 1.163 0.110 CAK NX8 12 NX8 CAR C11 C 0 1 N N N 13.209 -20.846 -13.190 -1.782 0.733 -0.328 CAR NX8 13 NX8 CAV C12 C 0 1 N N N 15.046 -22.671 -15.543 -5.421 0.359 0.342 CAV NX8 14 NX8 CAW C13 C 0 1 N N S 11.458 -21.461 -11.670 -0.356 -1.032 0.733 CAW NX8 15 NX8 CAX C14 C 0 1 N N R 10.317 -20.348 -12.156 1.184 -1.157 0.782 CAX NX8 16 NX8 CAY C15 C 0 1 N N S 12.637 -20.843 -11.773 -0.628 -0.211 -0.547 CAY NX8 17 NX8 CAZ C16 C 0 1 N N R 10.713 -19.299 -11.565 1.662 -0.397 -0.475 CAZ NX8 18 NX8 N6 N3 N 0 1 N N N 8.846 -13.638 -12.989 7.311 1.624 0.453 N6 NX8 19 NX8 N7 N4 N 0 1 Y N N 9.554 -16.635 -13.717 4.256 1.952 0.351 N7 NX8 20 NX8 N9 N5 N 0 1 Y N N 10.248 -18.065 -12.231 2.903 0.328 -0.191 N9 NX8 21 NX8 NAO N6 N 0 1 N N N 16.616 -24.987 -16.272 -8.156 -0.215 -0.386 NAO NX8 22 NX8 NAP N7 N 0 1 N N N 14.544 -21.300 -13.425 -3.018 0.246 -0.103 NAP NX8 23 NX8 OAB O1 O 0 1 N N N 12.592 -20.455 -14.077 -1.599 1.932 -0.356 OAB NX8 24 NX8 OAC O2 O 0 1 N N N 11.180 -21.738 -10.302 -0.959 -2.324 0.637 OAC NX8 25 NX8 OAD O3 O 0 1 N N N 9.004 -20.752 -11.655 1.578 -2.529 0.718 OAD NX8 26 NX8 OAQ O4 O 0 1 N N N 12.337 -19.376 -11.576 0.590 0.529 -0.777 OAQ NX8 27 NX8 H1 H1 H 0 1 N N N 10.015 -18.674 -14.287 2.172 2.309 0.316 H1 NX8 28 NX8 H2 H2 H 0 1 N N N 9.983 -14.975 -8.861 6.391 -2.527 -0.784 H2 NX8 29 NX8 H3 H3 H 0 1 N N N 15.228 -24.322 -17.734 -7.736 -0.207 1.672 H3 NX8 30 NX8 H4 H4 H 0 1 N N N 16.946 -23.935 -18.086 -8.681 1.184 1.090 H4 NX8 31 NX8 H5 H5 H 0 1 N N N 16.838 -25.273 -14.203 -7.353 -1.711 -1.622 H5 NX8 32 NX8 H6 H6 H 0 1 N N N 17.590 -23.779 -14.856 -6.971 -1.876 0.109 H6 NX8 33 NX8 H7 H7 H 0 1 N N N 16.968 -22.240 -16.327 -6.695 2.036 -0.118 H7 NX8 34 NX8 H8 H8 H 0 1 N N N 15.601 -21.926 -17.449 -6.340 1.835 1.615 H8 NX8 35 NX8 H9 H9 H 0 1 N N N 15.703 -23.069 -13.572 -4.981 -1.126 -1.158 H9 NX8 36 NX8 H10 H10 H 0 1 N N N 14.642 -24.328 -14.291 -5.890 0.281 -1.761 H10 NX8 37 NX8 H11 H11 H 0 1 N N N 15.984 -20.755 -14.952 -4.263 1.797 -0.769 H11 NX8 38 NX8 H12 H12 H 0 1 N N N 14.268 -20.600 -15.459 -3.940 1.787 0.981 H12 NX8 39 NX8 H13 H13 H 0 1 N N N 14.041 -22.933 -15.906 -5.268 -0.340 1.164 H13 NX8 40 NX8 H14 H14 H 0 1 N N N 11.371 -22.357 -12.302 -0.724 -0.504 1.612 H14 NX8 41 NX8 H15 H15 H 0 1 N N N 10.327 -20.291 -13.254 1.576 -0.689 1.685 H15 NX8 42 NX8 H16 H16 H 0 1 N N N 13.388 -21.192 -11.049 -0.836 -0.875 -1.387 H16 NX8 43 NX8 H17 H17 H 0 1 N N N 10.398 -19.274 -10.511 1.809 -1.090 -1.304 H17 NX8 44 NX8 H18 H18 H 0 1 N N N 8.701 -12.781 -12.495 6.986 2.508 0.683 H18 NX8 45 NX8 H19 H19 H 0 1 N N N 9.532 -13.499 -13.704 8.264 1.440 0.462 H19 NX8 46 NX8 H20 H20 H 0 1 N N N 15.956 -25.738 -16.264 -9.051 -0.677 -0.331 H20 NX8 47 NX8 H22 H22 H 0 1 N N N 15.138 -21.642 -12.697 -3.165 -0.713 -0.081 H22 NX8 48 NX8 H23 H23 H 0 1 N N N 11.806 -22.372 -9.973 -1.924 -2.303 0.573 H23 NX8 49 NX8 H24 H24 H 0 1 N N N 8.351 -20.119 -11.930 1.252 -3.066 1.454 H24 NX8 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NX8 CAG CAI SING N N 1 NX8 CAG NAO SING N N 2 NX8 CAI CAV SING N N 3 NX8 NAO CAH SING N N 4 NX8 CAV CAK SING N N 5 NX8 CAV CAJ SING N N 6 NX8 CAH CAJ SING N N 7 NX8 CAK NAP SING N N 8 NX8 OAB CAR DOUB N N 9 NX8 N7 C8 DOUB Y N 10 NX8 N7 C5 SING Y N 11 NX8 C8 N9 SING Y N 12 NX8 NAP CAR SING N N 13 NX8 CAR CAY SING N N 14 NX8 N6 C6 SING N N 15 NX8 C5 C6 DOUB Y N 16 NX8 C5 C4 SING Y N 17 NX8 N9 CAZ SING N N 18 NX8 N9 C4 SING Y N 19 NX8 CAX CAW SING N N 20 NX8 CAX OAD SING N N 21 NX8 CAX CAZ SING N N 22 NX8 C6 N1 SING Y N 23 NX8 CAY CAW SING N N 24 NX8 CAY OAQ SING N N 25 NX8 CAW OAC SING N N 26 NX8 OAQ CAZ SING N N 27 NX8 C4 N3 DOUB Y N 28 NX8 N1 C2 DOUB Y N 29 NX8 N3 C2 SING Y N 30 NX8 C8 H1 SING N N 31 NX8 C2 H2 SING N N 32 NX8 CAG H3 SING N N 33 NX8 CAG H4 SING N N 34 NX8 CAH H5 SING N N 35 NX8 CAH H6 SING N N 36 NX8 CAI H7 SING N N 37 NX8 CAI H8 SING N N 38 NX8 CAJ H9 SING N N 39 NX8 CAJ H10 SING N N 40 NX8 CAK H11 SING N N 41 NX8 CAK H12 SING N N 42 NX8 CAV H13 SING N N 43 NX8 CAW H14 SING N N 44 NX8 CAX H15 SING N N 45 NX8 CAY H16 SING N N 46 NX8 CAZ H17 SING N N 47 NX8 N6 H18 SING N N 48 NX8 N6 H19 SING N N 49 NX8 NAO H20 SING N N 50 NX8 NAP H22 SING N N 51 NX8 OAC H23 SING N N 52 NX8 OAD H24 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NX8 InChI InChI 1.03 "InChI=1S/C16H23N7O4/c17-13-9-14(21-6-20-13)23(7-22-9)16-11(25)10(24)12(27-16)15(26)19-5-8-1-3-18-4-2-8/h6-8,10-12,16,18,24-25H,1-5H2,(H,19,26)(H2,17,20,21)/t10-,11+,12-,16+/m0/s1" NX8 InChIKey InChI 1.03 QORMXDVXCHKGRB-MEQWQQMJSA-N NX8 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)C(=O)NCC4CCNCC4" NX8 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)C(=O)NCC4CCNCC4" NX8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C(=O)NCC4CCNCC4)O)O)N" NX8 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)C(=O)NCC4CCNCC4)O)O)N" # _pdbx_chem_comp_identifier.comp_id NX8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)-~{N}-(piperidin-4-ylmethyl)oxolane-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NX8 "Create component" 2020-01-02 PDBE NX8 "Initial release" 2020-03-04 RCSB ##