data_NXL # _chem_comp.id NXL _chem_comp.name "(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H13 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "avibactam, bound form; NXL104, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 267.260 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NXL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4DF6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NXL OAC OAC O 0 1 N N N N N N -12.415 -10.815 -4.154 -1.909 2.779 0.029 OAC NXL 1 NXL CAN CAN C 0 1 N N N N N N -13.376 -11.074 -4.890 -2.602 1.789 -0.078 CAN NXL 2 NXL N N N 0 1 N N N N N N -14.543 -11.584 -4.518 -2.042 0.606 -0.398 N NXL 3 NXL CAJ CAJ C 0 1 N N N N N N -15.662 -11.826 -5.473 -0.613 0.519 -0.729 CAJ NXL 4 NXL CA CA C 0 1 N N S N N N -14.755 -11.832 -3.094 -2.847 -0.623 -0.418 CA NXL 5 NXL C C C 0 1 N N N N N N -14.937 -13.216 -2.914 -4.227 -0.331 0.111 C NXL 6 NXL O O O 0 1 N N N N N N -14.869 -14.002 -3.889 -4.364 0.334 1.116 O NXL 7 NXL NAA NAA N 0 1 N N N N N N -15.088 -13.596 -1.634 -5.311 -0.808 -0.533 NAA NXL 8 NXL CB CB C 0 1 N N N N N N -15.886 -10.927 -2.582 -2.168 -1.671 0.469 CB NXL 9 NXL CAH CAH C 0 1 N N N N N N -17.112 -10.975 -3.530 -0.721 -1.862 0.011 CAH NXL 10 NXL CAO CAO C 0 1 N N R N N N -16.781 -10.902 -5.065 0.036 -0.545 0.163 CAO NXL 11 NXL NAK NAK N 0 1 N N N N N N -16.576 -9.494 -5.481 1.435 -0.737 -0.242 NAK NXL 12 NXL OAL OAL O 0 1 N N N N N N -15.006 -8.589 -5.173 2.322 0.166 0.492 OAL NXL 13 NXL SAR SAR S 0 1 N N N N N N -15.008 -7.360 -4.260 3.792 0.024 0.125 SAR NXL 14 NXL OAD OAD O 0 1 N N N N N N -15.472 -7.872 -2.896 3.982 0.682 -1.235 OAD NXL 15 NXL OAE OAE O 0 1 N N N N N N -13.671 -6.737 -4.014 4.516 0.814 1.058 OAE NXL 16 NXL OAG OAG O 0 1 N N N N N N -15.988 -6.300 -4.752 4.025 -1.365 -0.065 OAG NXL 17 NXL H1 H1 H 0 1 N N N N N N -13.252 -10.863 -5.942 -3.667 1.855 0.087 H1 NXL 18 NXL H2 H2 H 0 1 N N N N N N -15.993 -12.873 -5.413 -0.496 0.239 -1.776 H2 NXL 19 NXL H3 H3 H 0 1 N N N N N N -15.340 -11.602 -6.501 -0.137 1.484 -0.551 H3 NXL 20 NXL H4 H4 H 0 1 N N N N N N -13.841 -11.530 -2.562 -2.919 -0.997 -1.439 H4 NXL 21 NXL H5 H5 H 0 1 N N N N N N -15.154 -14.567 -1.405 -5.202 -1.339 -1.337 H5 NXL 22 NXL H6 H6 H 0 1 N N N N N N -15.134 -12.908 -0.910 -6.200 -0.620 -0.193 H6 NXL 23 NXL H7 H7 H 0 1 N N N N N N -15.519 -9.892 -2.522 -2.181 -1.334 1.506 H7 NXL 24 NXL H8 H8 H 0 1 N N N N N N -16.192 -11.266 -1.581 -2.704 -2.618 0.388 H8 NXL 25 NXL H9 H9 H 0 1 N N N N N N -17.765 -10.125 -3.283 -0.243 -2.625 0.625 H9 NXL 26 NXL H10 H10 H 0 1 N N N N N N -17.649 -11.917 -3.343 -0.708 -2.175 -1.033 H10 NXL 27 NXL H11 H11 H 0 1 N N N N N N -17.684 -11.258 -5.583 -0.002 -0.220 1.203 H11 NXL 28 NXL H12 H12 H 0 1 N N N N N N -16.718 -9.474 -6.471 1.717 -1.698 -0.121 H12 NXL 29 NXL H13 H13 H 0 1 N N N N N N -14.813 -7.673 -2.242 4.891 0.647 -1.565 H13 NXL 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NXL NAK CAO SING N N 1 NXL CAJ CAO SING N N 2 NXL CAJ N SING N N 3 NXL OAL SAR SING N N 4 NXL CAO CAH SING N N 5 NXL CAN N SING N N 6 NXL CAN OAC DOUB N N 7 NXL OAG SAR DOUB N N 8 NXL N CA SING N N 9 NXL SAR OAE DOUB N N 10 NXL SAR OAD SING N N 11 NXL O C DOUB N N 12 NXL CAH CB SING N N 13 NXL CA C SING N N 14 NXL CA CB SING N N 15 NXL C NAA SING N N 16 NXL NAK OAL SING N N 17 NXL CAN H1 SING N N 18 NXL CAJ H2 SING N N 19 NXL CAJ H3 SING N N 20 NXL CA H4 SING N N 21 NXL NAA H5 SING N N 22 NXL NAA H6 SING N N 23 NXL CB H7 SING N N 24 NXL CB H8 SING N N 25 NXL CAH H9 SING N N 26 NXL CAH H10 SING N N 27 NXL CAO H11 SING N N 28 NXL NAK H12 SING N N 29 NXL OAD H13 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NXL SMILES ACDLabs 12.01 "O=CN1C(C(N)=O)CCC(C1)NOS(=O)(O)=O" NXL InChI InChI 1.03 "InChI=1S/C7H13N3O6S/c8-7(12)6-2-1-5(3-10(6)4-11)9-16-17(13,14)15/h4-6,9H,1-3H2,(H2,8,12)(H,13,14,15)/t5-,6+/m1/s1" NXL InChIKey InChI 1.03 WJDGWXPPFHLLNL-RITPCOANSA-N NXL SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@@H]1CC[C@H](CN1C=O)NO[S](O)(=O)=O" NXL SMILES CACTVS 3.385 "NC(=O)[CH]1CC[CH](CN1C=O)NO[S](O)(=O)=O" NXL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1C[C@H](N(C[C@@H]1NOS(=O)(=O)O)C=O)C(=O)N" NXL SMILES "OpenEye OEToolkits" 1.7.6 "C1CC(N(CC1NOS(=O)(=O)O)C=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NXL "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide" NXL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(3R,6S)-6-aminocarbonyl-1-methanoyl-piperidin-3-yl]amino] hydrogen sulfate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NXL "Create component" 2012-01-25 RCSB NXL "Modify synonyms" 2015-05-26 RCSB NXL "Modify synonyms" 2020-02-12 PDBE NXL "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NXL "avibactam, bound form" ? ? 2 NXL "NXL104, bound form" ? ? # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession _pdbx_chem_comp_pcm.first_instance_model_db_code 1 NXL CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" CAN SG ? ? 6FJ1 2 NXL SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" CAN OG ? ? 4DF6 #