data_NY6 # _chem_comp.id NY6 _chem_comp.name "3-[2-[7-(diethylamino)-4-methyl-2-oxidanylidene-chromen-3-yl]ethyl]-8-(1~{H}-imidazol-5-ylcarbonyl)-1,3,8-triazaspiro[4.5]decane-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H32 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-09 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 520.580 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NY6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LMP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NY6 O4 O1 O 0 1 N N N 6.506 -19.148 -37.378 -2.119 -2.192 -1.069 O4 NY6 1 NY6 C9 C1 C 0 1 N N N 5.542 -18.809 -36.736 -2.900 -1.304 -0.779 C9 NY6 2 NY6 O O2 O 0 1 N N N 4.383 -19.523 -36.943 -4.199 -1.602 -0.614 O NY6 3 NY6 C8 C2 C 0 1 Y N N 3.227 -19.244 -36.254 -5.104 -0.654 -0.292 C8 NY6 4 NY6 C26 C3 C 0 1 Y N N 2.175 -20.116 -36.444 -6.441 -0.980 -0.125 C26 NY6 5 NY6 C4 C4 C 0 1 Y N N 0.965 -19.926 -35.760 -7.355 0.010 0.206 C4 NY6 6 NY6 N N1 N 0 1 N N N -0.131 -20.759 -35.997 -8.697 -0.317 0.373 N NY6 7 NY6 C2 C5 C 0 1 N N N -1.463 -20.474 -35.454 -9.667 0.724 0.722 C2 NY6 8 NY6 C3 C6 C 0 1 N N N -1.774 -21.273 -34.262 -10.240 1.337 -0.558 C3 NY6 9 NY6 C1 C7 C 0 1 N N N -0.059 -21.884 -36.932 -9.141 -1.702 0.199 C1 NY6 10 NY6 C C8 C 0 1 N N N 0.533 -23.033 -36.229 -9.059 -2.435 1.540 C NY6 11 NY6 C10 C9 C 0 1 N N N 5.521 -17.755 -35.743 -2.417 0.011 -0.620 C10 NY6 12 NY6 C24 C10 C 0 1 N N N 4.375 -17.434 -35.044 -3.276 1.013 -0.296 C24 NY6 13 NY6 C25 C11 C 0 1 N N N 4.341 -16.470 -33.890 -2.785 2.426 -0.121 C25 NY6 14 NY6 C7 C12 C 0 1 Y N N 3.159 -18.185 -35.354 -4.691 0.681 -0.123 C7 NY6 15 NY6 C6 C13 C 0 1 Y N N 1.939 -17.963 -34.719 -5.627 1.668 0.211 C6 NY6 16 NY6 C5 C14 C 0 1 Y N N 0.862 -18.820 -34.905 -6.939 1.332 0.372 C5 NY6 17 NY6 C11 C15 C 0 1 N N N 6.864 -17.158 -35.429 -0.951 0.304 -0.808 C11 NY6 18 NY6 C12 C16 C 0 1 N N N 7.081 -15.766 -35.996 -0.204 0.029 0.498 C12 NY6 19 NY6 N1 N2 N 0 1 N N N 7.045 -15.746 -37.465 1.222 0.314 0.315 N1 NY6 20 NY6 C23 C17 C 0 1 N N N 6.168 -14.957 -38.204 1.785 1.507 0.539 C23 NY6 21 NY6 O2 O3 O 0 1 N N N 5.363 -14.174 -37.733 1.170 2.484 0.920 O2 NY6 22 NY6 N5 N3 N 0 1 N N N 6.414 -15.188 -39.499 3.109 1.504 0.295 N5 NY6 23 NY6 C14 C18 C 0 1 N N N 7.501 -16.138 -39.717 3.448 0.143 -0.140 C14 NY6 24 NY6 C13 C19 C 0 1 N N N 7.948 -16.393 -38.284 2.130 -0.595 -0.095 C13 NY6 25 NY6 O3 O4 O 0 1 N N N 8.940 -17.004 -37.921 1.931 -1.758 -0.374 O3 NY6 26 NY6 C22 C20 C 0 1 N N N 8.639 -15.514 -40.560 4.443 -0.493 0.826 C22 NY6 27 NY6 C21 C21 C 0 1 N N N 9.650 -16.544 -41.049 5.746 0.314 0.818 C21 NY6 28 NY6 N2 N4 N 0 1 N N N 8.979 -17.634 -41.770 6.219 0.433 -0.568 N2 NY6 29 NY6 C16 C22 C 0 1 N N N 8.120 -18.344 -40.815 5.306 0.972 -1.585 C16 NY6 30 NY6 C15 C23 C 0 1 N N N 6.989 -17.445 -40.356 4.006 0.160 -1.559 C15 NY6 31 NY6 C17 C24 C 0 1 N N N 9.140 -17.727 -43.116 7.469 0.055 -0.900 C17 NY6 32 NY6 O1 O5 O 0 1 N N N 10.114 -17.232 -43.670 7.810 0.041 -2.068 O1 NY6 33 NY6 C18 C25 C 0 1 Y N N 8.163 -18.499 -43.990 8.419 -0.341 0.147 C18 NY6 34 NY6 N4 N5 N 0 1 Y N N 7.036 -19.063 -43.437 8.379 0.018 1.480 N4 NY6 35 NY6 C20 C26 C 0 1 Y N N 6.274 -19.532 -44.461 9.435 -0.563 2.077 C20 NY6 36 NY6 N3 N6 N 0 1 Y N N 6.846 -19.323 -45.638 10.107 -1.248 1.188 N3 NY6 37 NY6 C19 C27 C 0 1 Y N N 8.031 -18.683 -45.345 9.516 -1.142 -0.003 C19 NY6 38 NY6 H1 H1 H 0 1 N N N 2.283 -20.949 -37.123 -6.770 -2.000 -0.253 H1 NY6 39 NY6 H2 H2 H 0 1 N N N -1.513 -19.408 -35.186 -10.475 0.286 1.308 H2 NY6 40 NY6 H3 H3 H 0 1 N N N -2.213 -20.692 -36.229 -9.173 1.500 1.306 H3 NY6 41 NY6 H4 H4 H 0 1 N N N -2.781 -21.017 -33.901 -10.962 2.111 -0.298 H4 NY6 42 NY6 H5 H5 H 0 1 N N N -1.737 -22.342 -34.518 -9.433 1.775 -1.144 H5 NY6 43 NY6 H6 H6 H 0 1 N N N -1.037 -21.058 -33.474 -10.735 0.561 -1.142 H6 NY6 44 NY6 H7 H7 H 0 1 N N N 0.568 -21.612 -37.794 -10.170 -1.713 -0.158 H7 NY6 45 NY6 H8 H8 H 0 1 N N N -1.070 -22.142 -37.281 -8.498 -2.201 -0.527 H8 NY6 46 NY6 H9 H9 H 0 1 N N N 0.596 -23.890 -36.915 -8.030 -2.425 1.898 H9 NY6 47 NY6 H10 H10 H 0 1 N N N 1.542 -22.769 -35.879 -9.701 -1.937 2.266 H10 NY6 48 NY6 H11 H11 H 0 1 N N N -0.096 -23.299 -35.367 -9.389 -3.466 1.411 H11 NY6 49 NY6 H12 H12 H 0 1 N N N 3.312 -16.389 -33.509 -2.832 2.948 -1.076 H12 NY6 50 NY6 H13 H13 H 0 1 N N N 5.001 -16.834 -33.089 -3.413 2.942 0.606 H13 NY6 51 NY6 H14 H14 H 0 1 N N N 4.685 -15.481 -34.228 -1.755 2.412 0.235 H14 NY6 52 NY6 H15 H15 H 0 1 N N N 1.829 -17.107 -34.069 -5.310 2.692 0.341 H15 NY6 53 NY6 H16 H16 H 0 1 N N N -0.066 -18.632 -34.385 -7.660 2.093 0.630 H16 NY6 54 NY6 H17 H17 H 0 1 N N N 7.640 -17.821 -35.840 -0.551 -0.333 -1.597 H17 NY6 55 NY6 H18 H18 H 0 1 N N N 6.969 -17.104 -34.335 -0.822 1.350 -1.087 H18 NY6 56 NY6 H19 H19 H 0 1 N N N 8.062 -15.398 -35.662 -0.604 0.666 1.287 H19 NY6 57 NY6 H20 H20 H 0 1 N N N 6.291 -15.102 -35.614 -0.332 -1.018 0.776 H20 NY6 58 NY6 H21 H21 H 0 1 N N N 5.905 -14.754 -40.242 3.719 2.253 0.389 H21 NY6 59 NY6 H22 H22 H 0 1 N N N 9.166 -14.771 -39.943 4.022 -0.496 1.831 H22 NY6 60 NY6 H23 H23 H 0 1 N N N 8.195 -15.016 -41.434 4.647 -1.517 0.514 H23 NY6 61 NY6 H24 H24 H 0 1 N N N 10.187 -16.961 -40.184 5.563 1.307 1.229 H24 NY6 62 NY6 H25 H25 H 0 1 N N N 10.367 -16.053 -41.724 6.496 -0.198 1.421 H25 NY6 63 NY6 H26 H26 H 0 1 N N N 7.700 -19.237 -41.300 5.089 2.017 -1.364 H26 NY6 64 NY6 H27 H27 H 0 1 N N N 8.719 -18.647 -39.944 5.767 0.893 -2.569 H27 NY6 65 NY6 H28 H28 H 0 1 N N N 6.363 -17.192 -41.225 4.209 -0.861 -1.882 H28 NY6 66 NY6 H29 H29 H 0 1 N N N 6.385 -17.988 -39.614 3.279 0.617 -2.230 H29 NY6 67 NY6 H30 H30 H 0 1 N N N 6.818 -19.118 -42.463 7.715 0.583 1.906 H30 NY6 68 NY6 H31 H31 H 0 1 N N N 5.318 -20.017 -44.331 9.688 -0.478 3.123 H31 NY6 69 NY6 H33 H33 H 0 1 N N N 8.757 -18.369 -46.080 9.848 -1.602 -0.922 H33 NY6 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NY6 N3 C19 SING Y N 1 NY6 N3 C20 DOUB Y N 2 NY6 C19 C18 DOUB Y N 3 NY6 C20 N4 SING Y N 4 NY6 C18 N4 SING Y N 5 NY6 C18 C17 SING N N 6 NY6 O1 C17 DOUB N N 7 NY6 C17 N2 SING N N 8 NY6 N2 C21 SING N N 9 NY6 N2 C16 SING N N 10 NY6 C21 C22 SING N N 11 NY6 C16 C15 SING N N 12 NY6 C22 C14 SING N N 13 NY6 C15 C14 SING N N 14 NY6 C14 N5 SING N N 15 NY6 C14 C13 SING N N 16 NY6 N5 C23 SING N N 17 NY6 C13 O3 DOUB N N 18 NY6 C13 N1 SING N N 19 NY6 C23 O2 DOUB N N 20 NY6 C23 N1 SING N N 21 NY6 N1 C12 SING N N 22 NY6 O4 C9 DOUB N N 23 NY6 O C9 SING N N 24 NY6 O C8 SING N N 25 NY6 C1 C SING N N 26 NY6 C1 N SING N N 27 NY6 C9 C10 SING N N 28 NY6 C26 C8 DOUB Y N 29 NY6 C26 C4 SING Y N 30 NY6 C8 C7 SING Y N 31 NY6 N C4 SING N N 32 NY6 N C2 SING N N 33 NY6 C12 C11 SING N N 34 NY6 C4 C5 DOUB Y N 35 NY6 C10 C11 SING N N 36 NY6 C10 C24 DOUB N N 37 NY6 C2 C3 SING N N 38 NY6 C7 C24 SING N N 39 NY6 C7 C6 DOUB Y N 40 NY6 C24 C25 SING N N 41 NY6 C5 C6 SING Y N 42 NY6 C26 H1 SING N N 43 NY6 C2 H2 SING N N 44 NY6 C2 H3 SING N N 45 NY6 C3 H4 SING N N 46 NY6 C3 H5 SING N N 47 NY6 C3 H6 SING N N 48 NY6 C1 H7 SING N N 49 NY6 C1 H8 SING N N 50 NY6 C H9 SING N N 51 NY6 C H10 SING N N 52 NY6 C H11 SING N N 53 NY6 C25 H12 SING N N 54 NY6 C25 H13 SING N N 55 NY6 C25 H14 SING N N 56 NY6 C6 H15 SING N N 57 NY6 C5 H16 SING N N 58 NY6 C11 H17 SING N N 59 NY6 C11 H18 SING N N 60 NY6 C12 H19 SING N N 61 NY6 C12 H20 SING N N 62 NY6 N5 H21 SING N N 63 NY6 C22 H22 SING N N 64 NY6 C22 H23 SING N N 65 NY6 C21 H24 SING N N 66 NY6 C21 H25 SING N N 67 NY6 C16 H26 SING N N 68 NY6 C16 H27 SING N N 69 NY6 C15 H28 SING N N 70 NY6 C15 H29 SING N N 71 NY6 N4 H30 SING N N 72 NY6 C20 H31 SING N N 73 NY6 C19 H33 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NY6 InChI InChI 1.03 "InChI=1S/C27H32N6O5/c1-4-31(5-2)18-6-7-19-17(3)20(24(35)38-22(19)14-18)8-11-33-25(36)27(30-26(33)37)9-12-32(13-10-27)23(34)21-15-28-16-29-21/h6-7,14-16H,4-5,8-13H2,1-3H3,(H,28,29)(H,30,37)" NY6 InChIKey InChI 1.03 RSEDTPABRZYZKU-UHFFFAOYSA-N NY6 SMILES_CANONICAL CACTVS 3.385 "CCN(CC)c1ccc2C(=C(CCN3C(=O)NC4(CCN(CC4)C(=O)c5[nH]cnc5)C3=O)C(=O)Oc2c1)C" NY6 SMILES CACTVS 3.385 "CCN(CC)c1ccc2C(=C(CCN3C(=O)NC4(CCN(CC4)C(=O)c5[nH]cnc5)C3=O)C(=O)Oc2c1)C" NY6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN(CC)c1ccc2c(c1)OC(=O)C(=C2C)CCN3C(=O)C4(CCN(CC4)C(=O)c5cnc[nH]5)NC3=O" NY6 SMILES "OpenEye OEToolkits" 2.0.7 "CCN(CC)c1ccc2c(c1)OC(=O)C(=C2C)CCN3C(=O)C4(CCN(CC4)C(=O)c5cnc[nH]5)NC3=O" # _pdbx_chem_comp_identifier.comp_id NY6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[2-[7-(diethylamino)-4-methyl-2-oxidanylidene-chromen-3-yl]ethyl]-8-(1~{H}-imidazol-5-ylcarbonyl)-1,3,8-triazaspiro[4.5]decane-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NY6 "Create component" 2021-02-09 RCSB NY6 "Initial release" 2021-05-19 RCSB ##