data_NYA
#
_chem_comp.id NYA
_chem_comp.name "(1R,3R,7E,17beta)-17-{(1R,2E,4R)-4-hydroxy-1-methyl-4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]but-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H50 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-05-13
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 506.759
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NYA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ZMH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NYA C35 C35 C 0 1 N N N 7.498 6.163 26.849 -7.130 0.221 1.516 C35 NYA 1
NYA C36 C36 C 0 1 N N N 7.119 6.399 28.345 -8.387 0.556 0.710 C36 NYA 2
NYA C38 C38 C 0 1 N N N 6.695 4.939 26.290 -6.628 1.481 2.224 C38 NYA 3
NYA C31 C31 C 0 1 N N N 7.429 5.113 29.182 -8.056 1.628 -0.330 C31 NYA 4
NYA C32 C32 C 0 1 N N N 6.634 3.900 28.605 -7.554 2.888 0.378 C32 NYA 5
NYA C33 C33 C 0 1 N N N 7.026 3.661 27.113 -6.297 2.553 1.184 C33 NYA 6
NYA C17 C17 C 0 1 N N R 14.806 7.528 27.266 -0.497 -2.010 -0.856 C17 NYA 7
NYA C21 C21 C 0 1 N N N 14.795 6.087 29.329 -1.921 -2.764 1.053 C21 NYA 8
NYA C16 C16 C 0 1 N N N 15.543 6.789 26.119 -0.152 -0.836 -1.809 C16 NYA 9
NYA C13 C13 C 0 1 N N R 14.106 8.711 26.531 0.784 -2.277 -0.080 C13 NYA 10
NYA C15 C15 C 0 1 N N N 15.906 7.884 25.087 1.361 -0.541 -1.610 C15 NYA 11
NYA C14 C14 C 0 1 N N S 15.372 9.159 25.761 1.899 -1.874 -1.086 C14 NYA 12
NYA C8 C8 C 0 1 N N N 15.044 10.380 24.902 3.164 -1.821 -0.282 C8 NYA 13
NYA C12 C12 C 0 1 N N N 13.635 9.885 27.454 1.066 -3.690 0.373 C12 NYA 14
NYA C18 C18 C 0 1 N N N 12.928 8.269 25.600 0.842 -1.348 1.134 C18 NYA 15
NYA C7 C7 C 0 1 N N N 15.026 10.391 23.547 3.907 -0.722 -0.196 C7 NYA 16
NYA C9 C9 C 0 1 N N N 14.715 11.571 25.767 3.537 -3.115 0.427 C9 NYA 17
NYA C6 C6 C 0 1 N N N 14.727 11.596 22.729 5.139 -0.729 0.608 C6 NYA 18
NYA C23 C23 C 0 1 N N N 11.809 5.359 28.025 -3.389 -0.081 -0.617 C23 NYA 19
NYA C22 C22 C 0 1 N N N 13.076 5.577 27.632 -2.860 -1.277 -0.695 C22 NYA 20
NYA C24 C24 C 0 1 N N R 10.910 4.275 27.480 -4.627 0.249 -1.410 C24 NYA 21
NYA C20 C20 C 0 1 N N R 13.920 6.683 28.225 -1.622 -1.606 0.099 C20 NYA 22
NYA C29 C29 C 0 1 N N N 9.396 4.580 27.595 -5.713 0.771 -0.467 C29 NYA 23
NYA C28 C28 C 0 1 N N N 14.318 12.026 17.293 8.320 3.466 0.262 C28 NYA 24
NYA C30 C30 C 0 1 N N N 8.958 4.809 29.088 -6.970 1.106 -1.273 C30 NYA 25
NYA C34 C34 C 0 1 N N N 8.565 3.382 27.008 -5.211 2.031 0.241 C34 NYA 26
NYA C37 C37 C 0 1 N N N 9.028 5.862 26.759 -6.044 -0.301 0.573 C37 NYA 27
NYA C5 C5 C 0 1 N N N 14.640 11.591 21.372 5.819 0.398 0.790 C5 NYA 28
NYA C10 C10 C 0 1 N N N 14.792 10.293 20.531 7.157 0.384 1.493 C10 NYA 29
NYA C4 C4 C 0 1 N N N 14.342 12.911 20.649 5.272 1.716 0.292 C4 NYA 30
NYA C11 C11 C 0 1 N N N 13.517 11.245 26.689 2.350 -3.658 1.219 C11 NYA 31
NYA C1 C1 C 0 1 N N R 15.265 10.485 19.078 8.199 1.037 0.576 C1 NYA 32
NYA C2 C2 C 0 1 N N N 14.895 11.846 18.502 7.649 2.356 0.083 C2 NYA 33
NYA C3 C3 C 0 1 N N R 15.186 13.029 19.372 6.318 2.366 -0.623 C3 NYA 34
NYA O3 O3 O 0 1 N N N 11.215 3.067 28.172 -5.096 -0.928 -2.071 O3 NYA 35
NYA O2 O2 O 0 1 N N N 16.558 13.034 19.726 5.938 3.715 -0.904 O2 NYA 36
NYA O1 O1 O 0 1 N N N 14.680 9.430 18.327 8.462 0.180 -0.538 O1 NYA 37
NYA H35 H35 H 0 1 N N N 7.254 7.058 26.257 -7.366 -0.542 2.257 H35 NYA 38
NYA H36 H36 H 0 1 N N N 7.705 7.241 28.741 -8.745 -0.342 0.206 H36 NYA 39
NYA H36A H36A H 0 0 N N N 6.045 6.627 28.415 -9.161 0.928 1.382 H36A NYA 40
NYA H38 H38 H 0 1 N N N 5.618 5.148 26.363 -7.402 1.853 2.896 H38 NYA 41
NYA H38A H38A H 0 0 N N N 6.976 4.774 25.239 -5.732 1.243 2.798 H38A NYA 42
NYA H31 H31 H 0 1 N N N 7.134 5.276 30.229 -8.952 1.866 -0.904 H31 NYA 43
NYA H32 H32 H 0 1 N N N 6.871 3.000 29.191 -7.318 3.651 -0.363 H32 NYA 44
NYA H32A H32A H 0 0 N N N 5.557 4.115 28.664 -8.328 3.260 1.050 H32A NYA 45
NYA H33 H33 H 0 1 N N N 6.465 2.799 26.723 -5.939 3.451 1.688 H33 NYA 46
NYA H17 H17 H 0 1 N N N 15.512 7.867 28.038 -0.783 -2.891 -1.429 H17 NYA 47
NYA H21 H21 H 0 1 N N N 15.818 5.944 28.950 -1.025 -3.003 1.627 H21 NYA 48
NYA H21A H21A H 0 0 N N N 14.816 6.771 30.190 -2.723 -2.477 1.733 H21A NYA 49
NYA H21B H21B H 0 0 N N N 14.381 5.117 29.641 -2.228 -3.638 0.479 H21B NYA 50
NYA H16 H16 H 0 1 N N N 16.449 6.290 26.494 -0.345 -1.124 -2.843 H16 NYA 51
NYA H16A H16A H 0 0 N N N 14.916 6.003 25.673 -0.742 0.043 -1.549 H16A NYA 52
NYA H15 H15 H 0 1 N N N 16.990 7.937 24.908 1.832 -0.280 -2.558 H15 NYA 53
NYA H15A H15A H 0 0 N N N 15.479 7.704 24.089 1.507 0.250 -0.875 H15A NYA 54
NYA H14 H14 H 0 1 N N N 16.202 9.546 26.370 1.977 -2.603 -1.893 H14 NYA 55
NYA H12 H12 H 0 1 N N N 12.646 9.630 27.863 0.235 -4.059 0.975 H12 NYA 56
NYA H12A H12A H 0 0 N N N 14.389 10.011 28.245 1.210 -4.335 -0.494 H12A NYA 57
NYA H18 H18 H 0 1 N N N 12.009 8.165 26.195 0.078 -1.642 1.853 H18 NYA 58
NYA H18A H18A H 0 0 N N N 12.775 9.027 24.818 1.825 -1.419 1.599 H18A NYA 59
NYA H18B H18B H 0 0 N N N 13.173 7.304 25.133 0.665 -0.321 0.814 H18B NYA 60
NYA H7 H7 H 0 1 N N N 15.242 9.468 23.030 3.605 0.176 -0.715 H7 NYA 61
NYA H9 H9 H 0 1 N N N 15.590 11.823 26.385 3.844 -3.854 -0.313 H9 NYA 62
NYA H9A H9A H 0 1 N N N 14.452 12.422 25.122 4.366 -2.924 1.108 H9A NYA 63
NYA H6 H6 H 0 1 N N N 14.569 12.532 23.244 5.490 -1.649 1.051 H6 NYA 64
NYA H23 H23 H 0 1 N N N 11.404 6.008 28.788 -2.938 0.669 0.016 H23 NYA 65
NYA H22 H22 H 0 1 N N N 13.504 4.943 26.870 -3.311 -2.026 -1.327 H22 NYA 66
NYA H24 H24 H 0 1 N N N 11.107 4.196 26.401 -4.391 1.012 -2.151 H24 NYA 67
NYA H20 H20 H 0 1 N N N 13.182 7.413 28.588 -1.315 -0.732 0.673 H20 NYA 68
NYA H28 H28 H 0 1 N N N 14.174 11.061 16.831 9.275 3.445 0.766 H28 NYA 69
NYA H28A H28A H 0 0 N N N 14.046 12.978 16.861 7.918 4.404 -0.094 H28A NYA 70
NYA H30 H30 H 0 1 N N N 9.518 5.662 29.498 -7.328 0.208 -1.777 H30 NYA 71
NYA H30A H30A H 0 0 N N N 9.170 3.894 29.661 -6.734 1.869 -2.014 H30A NYA 72
NYA H34 H34 H 0 1 N N N 8.803 2.470 27.576 -4.975 2.795 -0.500 H34 NYA 73
NYA H34A H34A H 0 0 N N N 8.828 3.259 25.947 -4.315 1.793 0.815 H34A NYA 74
NYA H37 H37 H 0 1 N N N 9.299 5.694 25.706 -5.149 -0.539 1.147 H37 NYA 75
NYA H37A H37A H 0 0 N N N 9.581 6.721 27.167 -6.402 -1.199 0.069 H37A NYA 76
NYA H10 H10 H 0 1 N N N 15.534 9.658 21.037 7.087 0.945 2.425 H10 NYA 77
NYA H10A H10A H 0 0 N N N 13.784 9.857 20.465 7.449 -0.645 1.704 H10A NYA 78
NYA H4 H4 H 0 1 N N N 13.276 12.942 20.380 4.353 1.543 -0.269 H4 NYA 79
NYA H4A H4A H 0 1 N N N 14.591 13.747 21.319 5.069 2.372 1.138 H4A NYA 80
NYA H11 H11 H 0 1 N N N 12.613 11.202 26.063 2.185 -3.025 2.091 H11 NYA 81
NYA H11A H11A H 0 0 N N N 13.485 12.035 27.454 2.580 -4.670 1.554 H11A NYA 82
NYA H1 H1 H 0 1 N N N 16.364 10.455 19.036 9.120 1.209 1.133 H1 NYA 83
NYA H3 H3 H 0 1 N N N 14.945 13.958 18.834 6.391 1.803 -1.553 H3 NYA 84
NYA HO3 HO3 H 0 1 N N N 11.283 2.353 27.549 -5.326 -1.651 -1.472 HO3 NYA 85
NYA HO2 HO2 H 0 1 N N N 17.089 13.035 18.938 6.556 4.186 -1.479 HO2 NYA 86
NYA HO1 HO1 H 0 1 N N N 14.549 9.714 17.430 9.113 0.532 -1.160 HO1 NYA 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NYA C35 C36 SING N N 1
NYA C35 C38 SING N N 2
NYA C35 C37 SING N N 3
NYA C36 C31 SING N N 4
NYA C38 C33 SING N N 5
NYA C31 C32 SING N N 6
NYA C31 C30 SING N N 7
NYA C32 C33 SING N N 8
NYA C33 C34 SING N N 9
NYA C17 C16 SING N N 10
NYA C17 C13 SING N N 11
NYA C17 C20 SING N N 12
NYA C21 C20 SING N N 13
NYA C16 C15 SING N N 14
NYA C13 C14 SING N N 15
NYA C13 C12 SING N N 16
NYA C13 C18 SING N N 17
NYA C15 C14 SING N N 18
NYA C14 C8 SING N N 19
NYA C8 C7 DOUB N N 20
NYA C8 C9 SING N N 21
NYA C12 C11 SING N N 22
NYA C7 C6 SING N N 23
NYA C9 C11 SING N N 24
NYA C6 C5 DOUB N N 25
NYA C23 C22 DOUB N N 26
NYA C23 C24 SING N N 27
NYA C22 C20 SING N N 28
NYA C24 C29 SING N N 29
NYA C24 O3 SING N N 30
NYA C29 C30 SING N N 31
NYA C29 C34 SING N N 32
NYA C29 C37 SING N N 33
NYA C28 C2 DOUB N N 34
NYA C5 C10 SING N N 35
NYA C5 C4 SING N N 36
NYA C10 C1 SING N N 37
NYA C4 C3 SING N E 38
NYA C1 C2 SING N N 39
NYA C1 O1 SING N N 40
NYA C2 C3 SING N N 41
NYA C3 O2 SING N N 42
NYA C35 H35 SING N N 43
NYA C36 H36 SING N N 44
NYA C36 H36A SING N N 45
NYA C38 H38 SING N N 46
NYA C38 H38A SING N N 47
NYA C31 H31 SING N N 48
NYA C32 H32 SING N N 49
NYA C32 H32A SING N N 50
NYA C33 H33 SING N N 51
NYA C17 H17 SING N N 52
NYA C21 H21 SING N E 53
NYA C21 H21A SING N N 54
NYA C21 H21B SING N N 55
NYA C16 H16 SING N N 56
NYA C16 H16A SING N N 57
NYA C15 H15 SING N N 58
NYA C15 H15A SING N N 59
NYA C14 H14 SING N N 60
NYA C12 H12 SING N N 61
NYA C12 H12A SING N N 62
NYA C18 H18 SING N N 63
NYA C18 H18A SING N N 64
NYA C18 H18B SING N N 65
NYA C7 H7 SING N N 66
NYA C9 H9 SING N N 67
NYA C9 H9A SING N N 68
NYA C6 H6 SING N N 69
NYA C23 H23 SING N N 70
NYA C22 H22 SING N N 71
NYA C24 H24 SING N N 72
NYA C20 H20 SING N N 73
NYA C28 H28 SING N N 74
NYA C28 H28A SING N N 75
NYA C30 H30 SING N N 76
NYA C30 H30A SING N N 77
NYA C34 H34 SING N N 78
NYA C34 H34A SING N N 79
NYA C37 H37 SING N N 80
NYA C37 H37A SING N N 81
NYA C10 H10 SING N N 82
NYA C10 H10A SING N N 83
NYA C4 H4 SING N N 84
NYA C4 H4A SING N N 85
NYA C11 H11 SING N N 86
NYA C11 H11A SING N N 87
NYA C1 H1 SING N N 88
NYA C3 H3 SING N N 89
NYA O3 HO3 SING N N 90
NYA O2 HO2 SING N N 91
NYA O1 HO1 SING N N 92
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NYA SMILES ACDLabs 10.04 "OC6/C(=C)C(O)CC(=C\C=C2\C1CCC(C1(C)CCC2)C(/C=C/C(O)C34CC5CC(C3)CC(C4)C5)C)\C6"
NYA SMILES_CANONICAL CACTVS 3.341 "C[C@H](/C=C/[C@@H](O)C12CC3CC(CC(C3)C1)C2)[C@H]4CC[C@H]5\C(CCC[C@]45C)=C\C=C/6C[C@@H](O)C(=C)[C@H](O)C/6"
NYA SMILES CACTVS 3.341 "C[CH](C=C[CH](O)C12CC3CC(CC(C3)C1)C2)[CH]4CC[CH]5C(CCC[C]45C)=CC=C6C[CH](O)C(=C)[CH](O)C6"
NYA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H](\C=C\[C@H](C12CC3CC(C1)CC(C3)C2)O)[C@H]4CC[C@@H]\5[C@@]4(CCC/C5=C\C=C6C[C@H](C(=C)[C@@H](C6)O)O)C"
NYA SMILES "OpenEye OEToolkits" 1.5.0 "CC(C=CC(C12CC3CC(C1)CC(C3)C2)O)C4CCC5C4(CCCC5=CC=C6CC(C(=C)C(C6)O)O)C"
NYA InChI InChI 1.03
;InChI=1S/C34H50O3/c1-21(6-11-32(37)34-18-24-13-25(19-34)15-26(14-24)20-34)28-9-10-29-27(5-4-12-33(28,29)3)8-7-23-16-30(35)22(2)31(36)17-23/h6-8,11,21,24-26,28-32,35-37H,2,4-5,9-10,12-20H2,1,3H3/b11-6+,27-8+/t21-,24-,25+,26-,28-,29+,30-,31-,32-,33-,34-/m1/s1
;
NYA InChIKey InChI 1.03 XEQPVMGAXBNZAH-XMMQUESESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NYA "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,3R,7E,17beta)-17-{(1R,2E,4R)-4-hydroxy-1-methyl-4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]but-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol"
NYA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(E,2R,5R)-5-(1-adamantyl)-5-hydroxy-pent-3-en-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NYA "Create component" 2008-05-13 PDBJ
NYA "Modify descriptor" 2011-06-04 RCSB
#