data_NYF # _chem_comp.id NYF _chem_comp.name "N-(2-oxo-2-{[(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]amino}ethyl)pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H37 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-13 _chem_comp.pdbx_modified_date 2022-07-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 595.754 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NYF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UFF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NYF C13 C1 C 0 1 N N N 169.602 -14.906 9.348 2.449 2.409 -0.887 C13 NYF 1 NYF C11 C2 C 0 1 N N N 173.353 -10.978 7.847 -3.664 0.219 0.405 C11 NYF 2 NYF C17 C3 C 0 1 Y N N 168.666 -18.596 9.775 6.202 2.720 -1.150 C17 NYF 3 NYF C16 C4 C 0 1 Y N N 169.358 -19.185 8.713 6.507 3.383 0.024 C16 NYF 4 NYF C15 C5 C 0 1 Y N N 170.129 -18.390 7.855 5.499 3.731 0.903 C15 NYF 5 NYF C14 C6 C 0 1 Y N N 169.514 -16.418 9.123 3.881 2.753 -0.566 C14 NYF 6 NYF C24 C7 C 0 1 Y N N 176.141 -15.664 12.337 -5.991 3.861 -0.647 C24 NYF 7 NYF C23 C8 C 0 1 Y N N 175.654 -14.421 11.927 -4.637 3.868 -0.369 C23 NYF 8 NYF C22 C9 C 0 1 Y N N 176.384 -14.866 9.664 -5.024 2.494 1.553 C22 NYF 9 NYF C25 C10 C 0 1 Y N N 176.754 -16.514 11.408 -6.863 3.176 0.179 C25 NYF 10 NYF C20 C11 C 0 1 N N N 175.246 -12.635 10.181 -2.676 3.185 1.030 C20 NYF 11 NYF C19 C12 C 0 1 Y N N 170.208 -17.007 8.060 4.186 3.416 0.608 C19 NYF 12 NYF C01 C13 C 0 1 N N N 173.374 -19.654 12.321 7.081 -2.606 -0.768 C01 NYF 13 NYF C02 C14 C 0 1 N N N 172.670 -18.666 11.381 6.259 -1.461 -0.173 C02 NYF 14 NYF C03 C15 C 0 1 N N N 173.088 -17.216 11.683 4.905 -1.384 -0.881 C03 NYF 15 NYF C05 C16 C 0 1 N N N 171.547 -15.461 10.803 2.881 -0.030 -0.782 C05 NYF 16 NYF C06 C17 C 0 1 N N R 171.052 -14.529 9.685 2.071 1.097 -0.196 C06 NYF 17 NYF C08 C18 C 0 1 N N N 172.844 -12.765 11.024 -0.496 2.079 0.518 C08 NYF 18 NYF C09 C19 C 0 1 N N S 173.762 -12.600 9.803 -2.011 2.006 0.317 C09 NYF 19 NYF C18 C20 C 0 1 Y N N 168.747 -17.213 9.982 4.889 2.404 -1.445 C18 NYF 20 NYF C21 C21 C 0 1 Y N N 175.770 -14.023 10.595 -4.153 3.184 0.730 C21 NYF 21 NYF C26 C22 C 0 1 Y N N 176.875 -16.113 10.071 -6.379 2.493 1.279 C26 NYF 22 NYF C28 C23 C 0 1 Y N N 174.846 -19.822 11.910 8.415 -2.682 -0.071 C28 NYF 23 NYF C30 C24 C 0 1 Y N N 175.833 -20.064 12.873 8.572 -3.466 1.056 C30 NYF 24 NYF C31 C25 C 0 1 Y N N 175.208 -19.725 10.562 9.502 -1.970 -0.555 C31 NYF 25 NYF C32 C26 C 0 1 Y N N 176.557 -19.879 10.228 10.709 -2.069 0.119 C32 NYF 26 NYF C33 C27 C 0 1 Y N N 177.489 -20.123 11.244 10.789 -2.870 1.243 C33 NYF 27 NYF C34 C28 C 0 1 N N N 173.025 -9.545 7.391 -4.186 -1.074 0.978 C34 NYF 28 NYF C36 C29 C 0 1 N N N 173.488 -8.182 5.291 -6.087 -2.564 0.656 C36 NYF 29 NYF C37 C30 C 0 1 Y N N 174.428 -7.868 4.131 -7.348 -2.930 -0.022 C37 NYF 30 NYF C39 C31 C 0 1 Y N N 173.947 -7.714 2.827 -8.037 -4.095 0.337 C39 NYF 31 NYF C40 C32 C 0 1 Y N N 174.875 -7.423 1.820 -9.216 -4.390 -0.325 C40 NYF 32 NYF C41 C33 C 0 1 Y N N 176.230 -7.301 2.152 -9.672 -3.533 -1.311 C41 NYF 33 NYF C43 C34 C 0 1 Y N N 175.792 -7.740 4.392 -7.875 -2.118 -1.028 C43 NYF 34 NYF N04 N1 N 0 1 N N N 172.676 -16.359 10.568 4.117 -0.288 -0.311 N04 NYF 35 NYF N10 N2 N 0 1 N N N 173.464 -11.263 9.282 -2.518 0.750 0.874 N10 NYF 36 NYF N29 N3 N 0 1 Y N N 177.120 -20.209 12.531 9.736 -3.537 1.672 N29 NYF 37 NYF N35 N4 N 0 1 N N N 173.892 -9.209 6.259 -5.435 -1.437 0.306 N35 NYF 38 NYF N42 N5 N 0 1 Y N N 176.655 -7.461 3.410 -9.001 -2.442 -1.628 N42 NYF 39 NYF O12 O1 O 0 1 N N N 171.013 -15.459 11.888 2.421 -0.706 -1.678 O12 NYF 40 NYF O27 O2 O 0 1 N N N 173.532 -11.853 7.031 -4.276 0.781 -0.478 O27 NYF 41 NYF O38 O3 O 0 1 N N N 172.449 -7.578 5.403 -5.637 -3.279 1.531 O38 NYF 42 NYF S07 S1 S 0 1 N N N 171.187 -12.828 10.298 0.305 0.768 -0.447 S07 NYF 43 NYF H1 H1 H 0 1 N N N 169.288 -14.379 8.435 1.796 3.207 -0.534 H1 NYF 44 NYF H2 H2 H 0 1 N N N 168.944 -14.619 10.182 2.336 2.298 -1.965 H2 NYF 45 NYF H3 H3 H 0 1 N N N 168.069 -19.207 10.436 6.990 2.451 -1.839 H3 NYF 46 NYF H4 H4 H 0 1 N N N 169.298 -20.252 8.554 7.533 3.629 0.254 H4 NYF 47 NYF H5 H5 H 0 1 N N N 170.663 -18.845 7.034 5.737 4.249 1.820 H5 NYF 48 NYF H6 H6 H 0 1 N N N 176.045 -15.969 13.369 -6.368 4.395 -1.507 H6 NYF 49 NYF H7 H7 H 0 1 N N N 175.185 -13.764 12.645 -3.956 4.406 -1.012 H7 NYF 50 NYF H8 H8 H 0 1 N N N 176.479 -14.557 8.634 -4.647 1.960 2.412 H8 NYF 51 NYF H9 H9 H 0 1 N N N 177.132 -17.476 11.721 -7.921 3.175 -0.035 H9 NYF 52 NYF H10 H10 H 0 1 N N N 175.829 -12.293 9.313 -2.523 3.093 2.105 H10 NYF 53 NYF H11 H11 H 0 1 N N N 175.402 -11.944 11.023 -2.236 4.118 0.678 H11 NYF 54 NYF H12 H12 H 0 1 N N N 170.804 -16.396 7.399 3.398 3.688 1.295 H12 NYF 55 NYF H13 H13 H 0 1 N N N 173.326 -19.272 13.351 6.546 -3.546 -0.632 H13 NYF 56 NYF H14 H14 H 0 1 N N N 172.868 -20.629 12.268 7.237 -2.427 -1.832 H14 NYF 57 NYF H15 H15 H 0 1 N N N 171.582 -18.760 11.511 6.103 -1.640 0.891 H15 NYF 58 NYF H16 H16 H 0 1 N N N 172.937 -18.907 10.342 6.794 -0.521 -0.309 H16 NYF 59 NYF H17 H17 H 0 1 N N N 174.180 -17.165 11.804 5.060 -1.205 -1.945 H17 NYF 60 NYF H18 H18 H 0 1 N N N 172.600 -16.877 12.609 4.370 -2.324 -0.745 H18 NYF 61 NYF H19 H19 H 0 1 N N N 171.694 -14.612 8.795 2.278 1.176 0.871 H19 NYF 62 NYF H20 H20 H 0 1 N N N 173.072 -13.695 11.565 -0.131 3.050 0.184 H20 NYF 63 NYF H21 H21 H 0 1 N N N 172.942 -11.909 11.708 -0.262 1.946 1.574 H21 NYF 64 NYF H22 H22 H 0 1 N N N 173.542 -13.376 9.055 -2.239 2.050 -0.748 H22 NYF 65 NYF H23 H23 H 0 1 N N N 168.216 -16.759 10.806 4.650 1.890 -2.364 H23 NYF 66 NYF H24 H24 H 0 1 N N N 177.348 -16.767 9.353 -7.060 1.954 1.921 H24 NYF 67 NYF H25 H25 H 0 1 N N N 175.551 -20.135 13.913 7.732 -4.028 1.437 H25 NYF 68 NYF H26 H26 H 0 1 N N N 174.466 -19.536 9.800 9.410 -1.352 -1.436 H26 NYF 69 NYF H27 H27 H 0 1 N N N 176.876 -19.811 9.199 11.577 -1.529 -0.231 H27 NYF 70 NYF H28 H28 H 0 1 N N N 178.530 -20.245 10.985 11.726 -2.953 1.773 H28 NYF 71 NYF H29 H29 H 0 1 N N N 173.205 -8.842 8.218 -3.449 -1.862 0.826 H29 NYF 72 NYF H30 H30 H 0 1 N N N 171.971 -9.486 7.082 -4.370 -0.950 2.045 H30 NYF 73 NYF H31 H31 H 0 1 N N N 172.895 -7.816 2.604 -7.658 -4.746 1.110 H31 NYF 74 NYF H32 H32 H 0 1 N N N 174.549 -7.294 0.798 -9.774 -5.280 -0.075 H32 NYF 75 NYF H33 H33 H 0 1 N N N 176.946 -7.073 1.377 -10.591 -3.761 -1.829 H33 NYF 76 NYF H34 H34 H 0 1 N N N 176.156 -7.868 5.401 -7.356 -1.215 -1.313 H34 NYF 77 NYF H35 H35 H 0 1 N N N 173.146 -16.387 9.686 4.486 0.252 0.405 H35 NYF 78 NYF H36 H36 H 0 1 N N N 173.331 -10.514 9.931 -2.028 0.300 1.580 H36 NYF 79 NYF H37 H37 H 0 1 N N N 174.765 -9.683 6.145 -5.794 -0.867 -0.392 H37 NYF 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NYF C40 C41 DOUB Y N 1 NYF C40 C39 SING Y N 2 NYF C41 N42 SING Y N 3 NYF C39 C37 DOUB Y N 4 NYF N42 C43 DOUB Y N 5 NYF C37 C43 SING Y N 6 NYF C37 C36 SING N N 7 NYF C36 O38 DOUB N N 8 NYF C36 N35 SING N N 9 NYF N35 C34 SING N N 10 NYF O27 C11 DOUB N N 11 NYF C34 C11 SING N N 12 NYF C11 N10 SING N N 13 NYF C15 C19 DOUB Y N 14 NYF C15 C16 SING Y N 15 NYF C19 C14 SING Y N 16 NYF C16 C17 DOUB Y N 17 NYF C14 C13 SING N N 18 NYF C14 C18 DOUB Y N 19 NYF N10 C09 SING N N 20 NYF C13 C06 SING N N 21 NYF C22 C26 DOUB Y N 22 NYF C22 C21 SING Y N 23 NYF C06 S07 SING N N 24 NYF C06 C05 SING N N 25 NYF C17 C18 SING Y N 26 NYF C09 C20 SING N N 27 NYF C09 C08 SING N N 28 NYF C26 C25 SING Y N 29 NYF C20 C21 SING N N 30 NYF C32 C31 DOUB Y N 31 NYF C32 C33 SING Y N 32 NYF S07 C08 SING N N 33 NYF C31 C28 SING Y N 34 NYF N04 C05 SING N N 35 NYF N04 C03 SING N N 36 NYF C21 C23 DOUB Y N 37 NYF C05 O12 DOUB N N 38 NYF C33 N29 DOUB Y N 39 NYF C02 C03 SING N N 40 NYF C02 C01 SING N N 41 NYF C25 C24 DOUB Y N 42 NYF C28 C01 SING N N 43 NYF C28 C30 DOUB Y N 44 NYF C23 C24 SING Y N 45 NYF N29 C30 SING Y N 46 NYF C13 H1 SING N N 47 NYF C13 H2 SING N N 48 NYF C17 H3 SING N N 49 NYF C16 H4 SING N N 50 NYF C15 H5 SING N N 51 NYF C24 H6 SING N N 52 NYF C23 H7 SING N N 53 NYF C22 H8 SING N N 54 NYF C25 H9 SING N N 55 NYF C20 H10 SING N N 56 NYF C20 H11 SING N N 57 NYF C19 H12 SING N N 58 NYF C01 H13 SING N N 59 NYF C01 H14 SING N N 60 NYF C02 H15 SING N N 61 NYF C02 H16 SING N N 62 NYF C03 H17 SING N N 63 NYF C03 H18 SING N N 64 NYF C06 H19 SING N N 65 NYF C08 H20 SING N N 66 NYF C08 H21 SING N N 67 NYF C09 H22 SING N N 68 NYF C18 H23 SING N N 69 NYF C26 H24 SING N N 70 NYF C30 H25 SING N N 71 NYF C31 H26 SING N N 72 NYF C32 H27 SING N N 73 NYF C33 H28 SING N N 74 NYF C34 H29 SING N N 75 NYF C34 H30 SING N N 76 NYF C39 H31 SING N N 77 NYF C40 H32 SING N N 78 NYF C41 H33 SING N N 79 NYF C43 H34 SING N N 80 NYF N04 H35 SING N N 81 NYF N10 H36 SING N N 82 NYF N35 H37 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NYF SMILES ACDLabs 12.01 "O=C(NCC(=O)NC(Cc1ccccc1)CSC(Cc1ccccc1)C(=O)NCCCc1cccnc1)c1cccnc1" NYF InChI InChI 1.03 "InChI=1S/C34H37N5O3S/c40-32(24-38-33(41)29-16-9-18-36-23-29)39-30(20-26-10-3-1-4-11-26)25-43-31(21-27-12-5-2-6-13-27)34(42)37-19-8-15-28-14-7-17-35-22-28/h1-7,9-14,16-18,22-23,30-31H,8,15,19-21,24-25H2,(H,37,42)(H,38,41)(H,39,40)/t30-,31+/m0/s1" NYF InChIKey InChI 1.03 LKJAHHMUSXXSAP-IOWSJCHKSA-N NYF SMILES_CANONICAL CACTVS 3.385 "O=C(CNC(=O)c1cccnc1)N[C@H](CS[C@H](Cc2ccccc2)C(=O)NCCCc3cccnc3)Cc4ccccc4" NYF SMILES CACTVS 3.385 "O=C(CNC(=O)c1cccnc1)N[CH](CS[CH](Cc2ccccc2)C(=O)NCCCc3cccnc3)Cc4ccccc4" NYF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](CS[C@H](Cc2ccccc2)C(=O)NCCCc3cccnc3)NC(=O)CNC(=O)c4cccnc4" NYF SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(CSC(Cc2ccccc2)C(=O)NCCCc3cccnc3)NC(=O)CNC(=O)c4cccnc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NYF "SYSTEMATIC NAME" ACDLabs 12.01 "N-(2-oxo-2-{[(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]amino}ethyl)pyridine-3-carboxamide" NYF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-oxidanylidene-2-[[(2~{S})-1-[(2~{R})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-3-phenyl-propan-2-yl]amino]ethyl]pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NYF "Create component" 2022-04-13 RCSB NYF "Initial release" 2022-07-27 RCSB #