data_NYO # _chem_comp.id NYO _chem_comp.name "(5~{R})-3-[2-[7-(diethylamino)-4-methyl-2-oxidanylidene-chromen-3-yl]ethyl]-7-(1~{H}-imidazol-4-ylcarbonyl)-1,3,7-triazaspiro[4.4]nonane-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H30 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-09 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NYO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LMO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NYO C4 C1 C 0 1 Y N N -0.806 -20.760 35.794 -7.016 -0.678 -0.101 C4 NYO 1 NYO C5 C2 C 0 1 Y N N -0.608 -19.758 34.854 -6.307 -1.878 -0.018 C5 NYO 2 NYO C6 C3 C 0 1 Y N N -1.620 -18.874 34.535 -4.958 -1.869 0.184 C6 NYO 3 NYO N1 N1 N 0 1 N N N -6.909 -16.387 37.093 1.410 0.946 -0.268 N1 NYO 4 NYO N3 N2 N 0 1 Y N N -8.502 -17.499 45.691 10.311 -1.263 0.259 N3 NYO 5 NYO C2 C4 C 0 1 N N N 1.593 -21.404 35.720 -9.092 -1.984 -0.431 C2 NYO 6 NYO O4 O1 O 0 1 N N N -6.333 -19.536 37.101 -2.451 2.859 0.632 O4 NYO 7 NYO C9 C5 C 0 1 N N N -5.348 -19.351 36.419 -3.003 1.777 0.534 C9 NYO 8 NYO O O2 O 0 1 N N N -4.261 -20.163 36.677 -4.330 1.736 0.335 O NYO 9 NYO C8 C6 C 0 1 Y N N -3.060 -19.982 36.054 -4.989 0.563 0.220 C8 NYO 10 NYO C25 C7 C 0 1 Y N N -2.060 -20.858 36.398 -6.359 0.538 0.015 C25 NYO 11 NYO N N3 N 0 1 N N N 0.243 -21.604 36.183 -8.392 -0.702 -0.308 N NYO 12 NYO C3 C8 C 0 1 N N N 1.884 -22.176 34.496 -9.550 -2.450 0.953 C3 NYO 13 NYO C1 C9 C 0 1 N N N 0.042 -22.654 37.201 -9.141 0.553 -0.402 C1 NYO 14 NYO C C10 C 0 1 N N N -0.782 -23.678 36.574 -9.188 1.011 -1.861 C NYO 15 NYO C10 C11 C 0 1 N N N -5.204 -18.310 35.405 -2.233 0.601 0.638 C10 NYO 16 NYO C23 C12 C 0 1 N N N -4.006 -18.100 34.783 -2.833 -0.613 0.525 C23 NYO 17 NYO C24 C13 C 0 1 N N N -3.792 -17.012 33.776 -2.031 -1.885 0.621 C24 NYO 18 NYO C7 C14 C 0 1 Y N N -2.877 -18.971 35.120 -4.280 -0.651 0.308 C7 NYO 19 NYO C11 C15 C 0 1 N N N -6.496 -17.639 34.986 -0.745 0.690 0.861 C11 NYO 20 NYO C12 C16 C 0 1 N N N -6.769 -16.290 35.640 -0.036 0.859 -0.485 C12 NYO 21 NYO C22 C17 C 0 1 N N N -6.106 -15.685 38.010 2.073 2.090 -0.054 C22 NYO 22 NYO O2 O3 O 0 1 N N N -5.209 -14.899 37.738 1.542 3.183 -0.022 O2 NYO 23 NYO N5 N4 N 0 1 N N N -6.547 -15.984 39.229 3.396 1.892 0.122 N5 NYO 24 NYO C14 C18 C 0 1 N N R -7.671 -16.909 39.229 3.606 0.452 0.007 C14 NYO 25 NYO C13 C19 C 0 1 N N N -7.898 -17.094 37.748 2.241 -0.120 -0.253 C13 NYO 26 NYO O3 O4 O 0 1 N N N -8.780 -17.766 37.240 1.949 -1.286 -0.414 O3 NYO 27 NYO C21 C20 C 0 1 N N N -8.912 -16.352 39.955 4.233 -0.136 1.284 C21 NYO 28 NYO C20 C21 C 0 1 N N N -8.752 -16.804 41.393 5.746 0.057 1.002 C20 NYO 29 NYO N2 N5 N 0 1 N N N -7.845 -17.948 41.299 5.895 -0.167 -0.449 N2 NYO 30 NYO C15 C22 C 0 1 N N N -7.366 -18.221 39.953 4.600 0.097 -1.101 C15 NYO 31 NYO C16 C23 C 0 1 N N N -7.386 -18.683 42.312 7.026 -0.549 -1.073 C16 NYO 32 NYO O1 O5 O 0 1 N N N -6.621 -19.637 42.110 7.032 -0.703 -2.280 O1 NYO 33 NYO C17 C24 C 0 1 Y N N -7.758 -18.291 43.706 8.255 -0.781 -0.295 C17 NYO 34 NYO N4 N6 N 0 1 Y N N -7.214 -19.025 44.734 8.389 -0.653 1.050 N4 NYO 35 NYO C19 C25 C 0 1 Y N N -7.688 -18.519 45.894 9.616 -0.936 1.380 C19 NYO 36 NYO C18 C26 C 0 1 Y N N -8.540 -17.352 44.328 9.464 -1.168 -0.793 C18 NYO 37 NYO H1 H1 H 0 1 N N N 0.351 -19.668 34.365 -6.830 -2.818 -0.113 H1 NYO 38 NYO H2 H2 H 0 1 N N N -1.431 -18.091 33.816 -4.415 -2.800 0.248 H2 NYO 39 NYO H3 H3 H 0 1 N N N -8.983 -16.955 46.378 11.246 -1.516 0.220 H3 NYO 40 NYO H4 H4 H 0 1 N N N 2.289 -21.719 36.511 -9.960 -1.863 -1.079 H4 NYO 41 NYO H5 H5 H 0 1 N N N 1.740 -20.335 35.507 -8.419 -2.726 -0.860 H5 NYO 42 NYO H6 H6 H 0 1 N N N -2.244 -21.624 37.137 -6.913 1.462 -0.055 H6 NYO 43 NYO H7 H7 H 0 1 N N N 2.922 -21.991 34.183 -10.070 -3.403 0.861 H7 NYO 44 NYO H8 H8 H 0 1 N N N 1.748 -23.249 34.698 -8.681 -2.571 1.601 H8 NYO 45 NYO H9 H9 H 0 1 N N N 1.198 -21.864 33.694 -10.223 -1.708 1.382 H9 NYO 46 NYO H10 H10 H 0 1 N N N 1.010 -23.078 37.507 -10.157 0.399 -0.037 H10 NYO 47 NYO H11 H11 H 0 1 N N N -0.471 -22.238 38.081 -8.650 1.316 0.202 H11 NYO 48 NYO H12 H12 H 0 1 N N N -0.966 -24.492 37.291 -9.680 0.248 -2.465 H12 NYO 49 NYO H13 H13 H 0 1 N N N -1.742 -23.238 36.265 -9.745 1.945 -1.931 H13 NYO 50 NYO H14 H14 H 0 1 N N N -0.261 -24.078 35.691 -8.173 1.165 -2.227 H14 NYO 51 NYO H15 H15 H 0 1 N N N -4.728 -16.452 33.636 -2.695 -2.742 0.506 H15 NYO 52 NYO H16 H16 H 0 1 N N N -3.007 -16.330 34.135 -1.278 -1.900 -0.166 H16 NYO 53 NYO H17 H17 H 0 1 N N N -3.483 -17.455 32.818 -1.541 -1.933 1.594 H17 NYO 54 NYO H18 H18 H 0 1 N N N -6.464 -17.489 33.897 -0.523 1.546 1.498 H18 NYO 55 NYO H19 H19 H 0 1 N N N -7.327 -18.314 35.238 -0.395 -0.223 1.343 H19 NYO 56 NYO H20 H20 H 0 1 N N N -5.934 -15.612 35.411 -0.387 1.772 -0.967 H20 NYO 57 NYO H21 H21 H 0 1 N N N -7.700 -15.878 35.223 -0.258 0.004 -1.122 H21 NYO 58 NYO H22 H22 H 0 1 N N N -6.145 -15.609 40.065 4.070 2.569 0.290 H22 NYO 59 NYO H23 H23 H 0 1 N N N -8.937 -15.254 39.894 3.925 0.427 2.166 H23 NYO 60 NYO H24 H24 H 0 1 N N N -9.834 -16.764 39.519 3.986 -1.192 1.390 H24 NYO 61 NYO H25 H25 H 0 1 N N N -8.313 -16.005 42.009 6.055 1.069 1.263 H25 NYO 62 NYO H26 H26 H 0 1 N N N -9.720 -17.105 41.819 6.332 -0.673 1.561 H26 NYO 63 NYO H27 H27 H 0 1 N N N -7.910 -19.063 39.499 4.263 -0.793 -1.633 H27 NYO 64 NYO H28 H28 H 0 1 N N N -6.287 -18.437 39.950 4.697 0.932 -1.796 H28 NYO 65 NYO H30 H30 H 0 1 N N N -7.432 -18.903 46.870 10.017 -0.915 2.382 H30 NYO 66 NYO H31 H31 H 0 1 N N N -9.112 -16.595 43.812 9.702 -1.359 -1.829 H31 NYO 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NYO C24 C23 SING N N 1 NYO C3 C2 SING N N 2 NYO C6 C5 DOUB Y N 3 NYO C6 C7 SING Y N 4 NYO C23 C7 SING N N 5 NYO C23 C10 DOUB N N 6 NYO C5 C4 SING Y N 7 NYO C11 C10 SING N N 8 NYO C11 C12 SING N N 9 NYO C7 C8 DOUB Y N 10 NYO C10 C9 SING N N 11 NYO C12 N1 SING N N 12 NYO C2 N SING N N 13 NYO C4 N SING N N 14 NYO C4 C25 DOUB Y N 15 NYO C8 C25 SING Y N 16 NYO C8 O SING N N 17 NYO N C1 SING N N 18 NYO C9 O SING N N 19 NYO C9 O4 DOUB N N 20 NYO C C1 SING N N 21 NYO N1 C13 SING N N 22 NYO N1 C22 SING N N 23 NYO O3 C13 DOUB N N 24 NYO O2 C22 DOUB N N 25 NYO C13 C14 SING N N 26 NYO C22 N5 SING N N 27 NYO N5 C14 SING N N 28 NYO C14 C15 SING N N 29 NYO C14 C21 SING N N 30 NYO C15 N2 SING N N 31 NYO C21 C20 SING N N 32 NYO N2 C20 SING N N 33 NYO N2 C16 SING N N 34 NYO O1 C16 DOUB N N 35 NYO C16 C17 SING N N 36 NYO C17 C18 DOUB Y N 37 NYO C17 N4 SING Y N 38 NYO C18 N3 SING Y N 39 NYO N4 C19 DOUB Y N 40 NYO N3 C19 SING Y N 41 NYO C5 H1 SING N N 42 NYO C6 H2 SING N N 43 NYO N3 H3 SING N N 44 NYO C2 H4 SING N N 45 NYO C2 H5 SING N N 46 NYO C25 H6 SING N N 47 NYO C3 H7 SING N N 48 NYO C3 H8 SING N N 49 NYO C3 H9 SING N N 50 NYO C1 H10 SING N N 51 NYO C1 H11 SING N N 52 NYO C H12 SING N N 53 NYO C H13 SING N N 54 NYO C H14 SING N N 55 NYO C24 H15 SING N N 56 NYO C24 H16 SING N N 57 NYO C24 H17 SING N N 58 NYO C11 H18 SING N N 59 NYO C11 H19 SING N N 60 NYO C12 H20 SING N N 61 NYO C12 H21 SING N N 62 NYO N5 H22 SING N N 63 NYO C21 H23 SING N N 64 NYO C21 H24 SING N N 65 NYO C20 H25 SING N N 66 NYO C20 H26 SING N N 67 NYO C15 H27 SING N N 68 NYO C15 H28 SING N N 69 NYO C19 H30 SING N N 70 NYO C18 H31 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NYO InChI InChI 1.03 "InChI=1S/C26H30N6O5/c1-4-30(5-2)17-6-7-18-16(3)19(23(34)37-21(18)12-17)8-10-32-24(35)26(29-25(32)36)9-11-31(14-26)22(33)20-13-27-15-28-20/h6-7,12-13,15H,4-5,8-11,14H2,1-3H3,(H,27,28)(H,29,36)/t26-/m1/s1" NYO InChIKey InChI 1.03 PPPMGHIAXOKKFC-AREMUKBSSA-N NYO SMILES_CANONICAL CACTVS 3.385 "CCN(CC)c1ccc2C(=C(CCN3C(=O)N[C@@]4(CCN(C4)C(=O)c5c[nH]cn5)C3=O)C(=O)Oc2c1)C" NYO SMILES CACTVS 3.385 "CCN(CC)c1ccc2C(=C(CCN3C(=O)N[C]4(CCN(C4)C(=O)c5c[nH]cn5)C3=O)C(=O)Oc2c1)C" NYO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN(CC)c1ccc2c(c1)OC(=O)C(=C2C)CCN3C(=O)[C@]4(CCN(C4)C(=O)c5c[nH]cn5)NC3=O" NYO SMILES "OpenEye OEToolkits" 2.0.7 "CCN(CC)c1ccc2c(c1)OC(=O)C(=C2C)CCN3C(=O)C4(CCN(C4)C(=O)c5c[nH]cn5)NC3=O" # _pdbx_chem_comp_identifier.comp_id NYO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{R})-3-[2-[7-(diethylamino)-4-methyl-2-oxidanylidene-chromen-3-yl]ethyl]-7-(1~{H}-imidazol-4-ylcarbonyl)-1,3,7-triazaspiro[4.4]nonane-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NYO "Create component" 2021-02-09 RCSB NYO "Initial release" 2021-05-19 RCSB ##