data_O06 # _chem_comp.id O06 _chem_comp.name "~{N}-[3-methyl-2-(3-methyl-3-oxidanyl-butyl)-6-(2-oxidanylpropan-2-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 F3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-25 _chem_comp.pdbx_modified_date 2023-09-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 464.481 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O06 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ATN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O06 C4 C1 C 0 1 Y N N 21.110 39.301 6.510 -2.124 0.055 -0.397 C4 O06 1 O06 C14 C2 C 0 1 N N N 20.230 39.289 4.051 -3.443 2.178 -0.847 C14 O06 2 O06 C5 C3 C 0 1 Y N N 20.504 39.224 7.743 -2.480 -1.296 -0.245 C5 O06 3 O06 C6 C4 C 0 1 Y N N 21.287 39.293 8.891 -1.488 -2.248 0.005 C6 O06 4 O06 C7 C5 C 0 1 Y N N 22.681 39.391 8.835 -0.182 -1.862 0.101 C7 O06 5 O06 C8 C6 C 0 1 N N N 23.482 39.445 10.159 0.883 -2.894 0.371 C8 O06 6 O06 C10 C7 C 0 1 N N N 22.591 39.225 11.394 1.557 -2.592 1.711 C10 O06 7 O06 C12 C8 C 0 1 Y N N 18.979 39.137 6.272 -4.309 -0.180 -0.616 C12 O06 8 O06 N1 N1 N 0 1 N N N 24.681 39.535 7.524 1.519 -0.146 0.052 N1 O06 9 O06 C3 C9 C 0 1 Y N N 22.503 39.420 6.427 -0.793 0.435 -0.297 C3 O06 10 O06 F28 F1 F 0 1 N N N 29.013 41.573 10.015 5.887 -1.224 -0.664 F28 O06 11 O06 C27 C10 C 0 1 N N N 29.075 40.265 9.827 6.520 -0.025 -0.319 C27 O06 12 O06 F29 F2 F 0 1 N N N 28.183 39.699 10.599 7.337 -0.234 0.798 F29 O06 13 O06 F30 F3 F 0 1 N N N 30.271 39.788 10.145 7.301 0.416 -1.392 F30 O06 14 O06 C23 C11 C 0 1 Y N N 28.670 39.811 8.434 5.480 1.016 0.007 C23 O06 15 O06 N22 N2 N 0 1 Y N N 27.378 39.891 8.075 4.209 0.677 0.032 N22 O06 16 O06 C24 C12 C 0 1 Y N N 29.612 39.257 7.587 5.876 2.315 0.282 C24 O06 17 O06 C25 C13 C 0 1 Y N N 29.199 38.828 6.329 4.916 3.269 0.581 C25 O06 18 O06 C26 C14 C 0 1 Y N N 27.858 38.947 5.962 3.584 2.886 0.594 C26 O06 19 O06 C21 C15 C 0 1 Y N N 26.961 39.491 6.863 3.259 1.560 0.313 C21 O06 20 O06 C20 C16 C 0 1 N N N 25.510 39.604 6.461 1.840 1.135 0.323 C20 O06 21 O06 O31 O1 O 0 1 N N N 25.225 39.827 5.275 0.966 1.940 0.575 O31 O06 22 O06 C2 C17 C 0 1 Y N N 23.321 39.472 7.575 0.176 -0.524 -0.050 C2 O06 23 O06 C33 C18 C 0 1 N N N 24.100 40.807 10.225 0.246 -4.284 0.423 C33 O06 24 O06 O9 O2 O 0 1 N N N 24.535 38.466 10.138 1.859 -2.856 -0.672 O9 O06 25 O06 N11 N3 N 0 1 Y N N 19.193 39.127 7.562 -3.829 -1.368 -0.391 N11 O06 26 O06 N13 N4 N 0 1 Y N N 20.121 39.241 5.626 -3.303 0.737 -0.626 N13 O06 27 O06 C15 C19 C 0 1 N N N 17.643 39.052 5.637 -5.767 0.136 -0.829 C15 O06 28 O06 C16 C20 C 0 1 N N N 17.276 37.601 5.672 -6.424 0.446 0.517 C16 O06 29 O06 C17 C21 C 0 1 N N N 16.189 37.292 4.649 -7.904 0.767 0.301 C17 O06 30 O06 C19 C22 C 0 1 N N N 16.334 38.083 3.340 -8.532 1.198 1.628 C19 O06 31 O06 C32 C23 C 0 1 N N N 16.216 35.790 4.397 -8.036 1.901 -0.718 C32 O06 32 O06 O18 O3 O 0 1 N N N 14.935 37.628 5.275 -8.577 -0.394 -0.189 O18 O06 33 O06 H1 H1 H 0 1 N N N 21.287 39.378 3.759 -3.599 2.679 0.109 H1 O06 34 O06 H2 H2 H 0 1 N N N 19.808 38.366 3.626 -2.538 2.563 -1.316 H2 O06 35 O06 H3 H3 H 0 1 N N N 19.671 40.157 3.671 -4.297 2.364 -1.498 H3 O06 36 O06 H4 H4 H 0 1 N N N 20.803 39.270 9.856 -1.754 -3.288 0.123 H4 O06 37 O06 H5 H5 H 0 1 N N N 23.207 39.273 12.304 0.828 -2.691 2.515 H5 O06 38 O06 H6 H6 H 0 1 N N N 21.818 40.007 11.433 2.375 -3.295 1.873 H6 O06 39 O06 H7 H7 H 0 1 N N N 22.110 38.238 11.328 1.950 -1.575 1.699 H7 O06 40 O06 H8 H8 H 0 1 N N N 25.137 39.529 8.414 2.219 -0.806 -0.072 H8 O06 41 O06 H9 H9 H 0 1 N N N 22.966 39.474 5.453 -0.515 1.471 -0.414 H9 O06 42 O06 H10 H10 H 0 1 N N N 30.643 39.160 7.894 6.923 2.581 0.264 H10 O06 43 O06 H11 H11 H 0 1 N N N 29.914 38.404 5.639 5.200 4.288 0.799 H11 O06 44 O06 H12 H12 H 0 1 N N N 27.525 38.619 4.988 2.810 3.603 0.823 H12 O06 45 O06 H13 H13 H 0 1 N N N 24.685 40.900 11.152 -0.202 -4.514 -0.544 H13 O06 46 O06 H14 H14 H 0 1 N N N 24.762 40.952 9.358 1.010 -5.025 0.656 H14 O06 47 O06 H15 H15 H 0 1 N N N 23.308 41.570 10.213 -0.525 -4.301 1.193 H15 O06 48 O06 H16 H16 H 0 1 N N N 25.021 38.506 10.953 1.501 -3.038 -1.552 H16 O06 49 O06 H17 H17 H 0 1 N N N 17.687 39.413 4.599 -5.859 1.001 -1.486 H17 O06 50 O06 H18 H18 H 0 1 N N N 16.910 39.648 6.201 -6.261 -0.721 -1.286 H18 O06 51 O06 H19 H19 H 0 1 N N N 16.908 37.346 6.677 -6.332 -0.419 1.174 H19 O06 52 O06 H20 H20 H 0 1 N N N 18.167 36.998 5.444 -5.929 1.304 0.974 H20 O06 53 O06 H21 H21 H 0 1 N N N 16.311 39.161 3.558 -8.438 0.391 2.354 H21 O06 54 O06 H22 H22 H 0 1 N N N 17.290 37.827 2.861 -8.019 2.085 2.001 H22 O06 55 O06 H23 H23 H 0 1 N N N 15.505 37.828 2.664 -9.586 1.427 1.473 H23 O06 56 O06 H24 H24 H 0 1 N N N 16.110 35.255 5.353 -9.091 2.130 -0.873 H24 O06 57 O06 H25 H25 H 0 1 N N N 15.386 35.515 3.729 -7.523 2.787 -0.344 H25 O06 58 O06 H26 H26 H 0 1 N N N 17.171 35.514 3.927 -7.589 1.594 -1.663 H26 O06 59 O06 H27 H27 H 0 1 N N N 14.844 37.140 6.085 -8.534 -1.155 0.407 H27 O06 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O06 C19 C17 SING N N 1 O06 C14 N13 SING N N 2 O06 C32 C17 SING N N 3 O06 C17 O18 SING N N 4 O06 C17 C16 SING N N 5 O06 O31 C20 DOUB N N 6 O06 N13 C12 SING Y N 7 O06 N13 C4 SING Y N 8 O06 C15 C16 SING N N 9 O06 C15 C12 SING N N 10 O06 C26 C25 DOUB Y N 11 O06 C26 C21 SING Y N 12 O06 C12 N11 DOUB Y N 13 O06 C25 C24 SING Y N 14 O06 C3 C4 DOUB Y N 15 O06 C3 C2 SING Y N 16 O06 C20 C21 SING N N 17 O06 C20 N1 SING N N 18 O06 C4 C5 SING Y N 19 O06 C21 N22 DOUB Y N 20 O06 N1 C2 SING N N 21 O06 N11 C5 SING Y N 22 O06 C2 C7 DOUB Y N 23 O06 C24 C23 DOUB Y N 24 O06 C5 C6 DOUB Y N 25 O06 N22 C23 SING Y N 26 O06 C23 C27 SING N N 27 O06 C7 C6 SING Y N 28 O06 C7 C8 SING N N 29 O06 C27 F28 SING N N 30 O06 C27 F30 SING N N 31 O06 C27 F29 SING N N 32 O06 O9 C8 SING N N 33 O06 C8 C33 SING N N 34 O06 C8 C10 SING N N 35 O06 C14 H1 SING N N 36 O06 C14 H2 SING N N 37 O06 C14 H3 SING N N 38 O06 C6 H4 SING N N 39 O06 C10 H5 SING N N 40 O06 C10 H6 SING N N 41 O06 C10 H7 SING N N 42 O06 N1 H8 SING N N 43 O06 C3 H9 SING N N 44 O06 C24 H10 SING N N 45 O06 C25 H11 SING N N 46 O06 C26 H12 SING N N 47 O06 C33 H13 SING N N 48 O06 C33 H14 SING N N 49 O06 C33 H15 SING N N 50 O06 O9 H16 SING N N 51 O06 C15 H17 SING N N 52 O06 C15 H18 SING N N 53 O06 C16 H19 SING N N 54 O06 C16 H20 SING N N 55 O06 C19 H21 SING N N 56 O06 C19 H22 SING N N 57 O06 C19 H23 SING N N 58 O06 C32 H24 SING N N 59 O06 C32 H25 SING N N 60 O06 C32 H26 SING N N 61 O06 O18 H27 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O06 InChI InChI 1.06 "InChI=1S/C23H27F3N4O3/c1-21(2,32)10-9-19-28-16-11-13(22(3,4)33)15(12-17(16)30(19)5)29-20(31)14-7-6-8-18(27-14)23(24,25)26/h6-8,11-12,32-33H,9-10H2,1-5H3,(H,29,31)" O06 InChIKey InChI 1.06 HRMRCQCPDQTKCV-UHFFFAOYSA-N O06 SMILES_CANONICAL CACTVS 3.385 "Cn1c(CCC(C)(C)O)nc2cc(c(NC(=O)c3cccc(n3)C(F)(F)F)cc12)C(C)(C)O" O06 SMILES CACTVS 3.385 "Cn1c(CCC(C)(C)O)nc2cc(c(NC(=O)c3cccc(n3)C(F)(F)F)cc12)C(C)(C)O" O06 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)(CCc1nc2cc(c(cc2n1C)NC(=O)c3cccc(n3)C(F)(F)F)C(C)(C)O)O" O06 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(CCc1nc2cc(c(cc2n1C)NC(=O)c3cccc(n3)C(F)(F)F)C(C)(C)O)O" # _pdbx_chem_comp_identifier.comp_id O06 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "~{N}-[3-methyl-2-(3-methyl-3-oxidanyl-butyl)-6-(2-oxidanylpropan-2-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O06 "Create component" 2022-08-25 PDBE O06 "Initial release" 2023-09-06 RCSB #