data_O0E # _chem_comp.id O0E _chem_comp.name "(2~{S})-1-[(2~{S})-2-[(3-azanylnaphthalen-2-yl)carbonylamino]-3-(1~{H}-imidazol-4-yl)propanoyl]-~{N}-[(2~{S})-1-azanyl-1-oxidanylidene-propan-2-yl]pyrrolidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-13 _chem_comp.pdbx_modified_date 2021-01-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 491.542 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O0E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TW3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O0E O3 O1 O 0 1 N N N 27.888 -0.238 42.788 2.577 1.849 0.832 O3 O0E 1 O0E N N1 N 0 1 N N N 28.817 -0.813 40.318 4.896 1.204 1.499 N O0E 2 O0E C C1 C 0 1 Y N N 27.478 -0.754 39.965 4.615 -0.055 0.980 C O0E 3 O0E O O2 O 0 1 N N N 21.142 5.671 48.152 -7.423 -2.021 0.663 O O0E 4 O0E C1 C2 C 0 1 Y N N 26.520 -0.187 40.852 3.329 -0.330 0.464 C1 O0E 5 O0E C10 C3 C 0 1 N N N 23.288 3.688 46.446 -4.124 -0.030 0.033 C10 O0E 6 O0E C11 C4 C 0 1 N N S 21.151 4.757 45.940 -5.413 -2.007 -0.575 C11 O0E 7 O0E C12 C5 C 0 1 N N N 21.066 5.898 46.942 -6.802 -2.501 -0.262 C12 O0E 8 O0E C13 C6 C 0 1 N N N 19.739 4.316 45.554 -4.421 -3.166 -0.460 C13 O0E 9 O0E C14 C7 C 0 1 N N N 24.629 2.654 48.291 -4.684 2.275 0.851 C14 O0E 10 O0E C15 C8 C 0 1 N N N 25.713 1.606 48.354 -3.800 3.421 1.410 C15 O0E 11 O0E C16 C9 C 0 1 N N N 26.233 1.479 46.926 -2.382 3.019 0.952 C16 O0E 12 O0E C17 C10 C 0 1 Y N N 25.217 -0.029 40.431 3.035 -1.579 -0.057 C17 O0E 13 O0E C18 C11 C 0 1 Y N N 24.791 -0.451 39.157 4.020 -2.576 -0.071 C18 O0E 14 O0E C19 C12 C 0 1 Y N N 25.715 -1.098 38.313 5.311 -2.296 0.448 C19 O0E 15 O0E C2 C13 C 0 1 N N N 26.926 0.270 42.214 2.293 0.720 0.480 C2 O0E 16 O0E C20 C14 C 0 1 Y N N 25.271 -1.576 37.061 6.295 -3.301 0.424 C20 O0E 17 O0E C21 C15 C 0 1 Y N N 23.974 -1.411 36.672 5.994 -4.527 -0.085 C21 O0E 18 O0E C22 C16 C 0 1 Y N N 23.069 -0.769 37.499 4.722 -4.805 -0.584 C22 O0E 19 O0E C23 C17 C 0 1 Y N N 23.459 -0.293 38.713 3.750 -3.854 -0.593 C23 O0E 20 O0E C24 C18 C 0 1 Y N N 27.050 -1.236 38.754 5.594 -1.022 0.967 C24 O0E 21 O0E C3 C19 C 0 1 N N S 26.505 1.823 44.063 0.004 1.472 0.121 C3 O0E 22 O0E C4 C20 C 0 1 N N N 27.410 3.054 43.890 0.055 2.260 -1.190 C4 O0E 23 O0E C5 C21 C 0 1 Y N N 28.768 2.721 43.354 1.356 3.016 -1.270 C5 O0E 24 O0E C6 C22 C 0 1 Y N N 29.248 2.842 42.087 2.250 2.949 -2.276 C6 O0E 25 O0E C7 C23 C 0 1 Y N N 30.805 2.023 43.371 2.979 4.340 -0.752 C7 O0E 26 O0E C8 C24 C 0 1 N N N 25.184 2.146 44.771 -1.354 0.836 0.271 C8 O0E 27 O0E C9 C25 C 0 1 N N S 23.991 2.419 46.918 -3.745 1.053 1.010 C9 O0E 28 O0E N1 N2 N 0 1 N N N 26.199 1.254 42.759 1.032 0.429 0.105 N1 O0E 29 O0E N2 N3 N 0 1 Y N N 30.540 2.395 42.114 3.279 3.789 -1.947 N2 O0E 30 O0E N3 N4 N 0 1 Y N N 29.761 2.199 44.167 1.825 3.878 -0.356 N3 O0E 31 O0E N4 N5 N 0 1 N N N 25.137 2.009 46.104 -2.398 1.570 0.705 N4 O0E 32 O0E N5 N6 N 0 1 N N N 21.957 3.606 46.322 -5.044 -0.954 0.375 N5 O0E 33 O0E N6 N7 N 0 1 N N N 20.886 7.118 46.431 -7.354 -3.477 -1.010 N6 O0E 34 O0E O1 O3 O 0 1 N N N 23.924 4.718 46.234 -3.601 -0.071 -1.061 O1 O0E 35 O0E O2 O4 O 0 1 N N N 24.195 2.453 44.135 -1.508 -0.337 0.002 O2 O0E 36 O0E H4 H1 H 0 1 N N N 28.940 -0.418 41.228 4.253 1.924 1.402 H4 O0E 37 O0E H3 H2 H 0 1 N N N 29.118 -1.767 40.325 5.734 1.362 1.961 H3 O0E 38 O0E H2 H3 H 0 1 N N N 21.601 5.178 45.029 -5.389 -1.607 -1.588 H2 O0E 39 O0E H15 H4 H 0 1 N N N 19.144 5.196 45.269 -4.445 -3.566 0.553 H15 O0E 40 O0E H16 H5 H 0 1 N N N 19.792 3.619 44.705 -4.695 -3.950 -1.167 H16 O0E 41 O0E H14 H6 H 0 1 N N N 19.264 3.815 46.411 -3.417 -2.809 -0.686 H14 O0E 42 O0E H18 H7 H 0 1 N N N 25.055 3.666 48.360 -5.588 2.152 1.447 H18 O0E 43 O0E H17 H8 H 0 1 N N N 23.894 2.510 49.097 -4.930 2.446 -0.197 H17 O0E 44 O0E H20 H9 H 0 1 N N N 25.302 0.647 48.701 -4.089 4.378 0.974 H20 O0E 45 O0E H19 H10 H 0 1 N N N 26.519 1.926 49.031 -3.862 3.460 2.497 H19 O0E 46 O0E H22 H11 H 0 1 N N N 26.437 0.428 46.676 -2.124 3.549 0.036 H22 O0E 47 O0E H21 H12 H 0 1 N N N 27.148 2.073 46.788 -1.660 3.256 1.734 H21 O0E 48 O0E H23 H13 H 0 1 N N N 24.503 0.432 41.097 2.050 -1.785 -0.449 H23 O0E 49 O0E H24 H14 H 0 1 N N N 25.966 -2.078 36.404 7.284 -3.101 0.807 H24 O0E 50 O0E H25 H15 H 0 1 N N N 23.651 -1.784 35.711 6.752 -5.296 -0.102 H25 O0E 51 O0E H26 H16 H 0 1 N N N 22.045 -0.645 37.179 4.510 -5.786 -0.983 H26 O0E 52 O0E H27 H17 H 0 1 N N N 22.742 0.211 39.344 2.770 -4.084 -0.984 H27 O0E 53 O0E H28 H18 H 0 1 N N N 27.760 -1.739 38.114 6.575 -0.805 1.363 H28 O0E 54 O0E H H19 H 0 1 N N N 27.047 1.080 44.666 0.183 2.147 0.958 H O0E 55 O0E H6 H20 H 0 1 N N N 27.531 3.539 44.870 -0.017 1.571 -2.031 H6 O0E 56 O0E H7 H21 H 0 1 N N N 26.921 3.751 43.194 -0.777 2.963 -1.224 H7 O0E 57 O0E H8 H22 H 0 1 N N N 28.713 3.218 41.227 2.169 2.348 -3.169 H8 O0E 58 O0E H10 H23 H 0 1 N N N 31.755 1.627 43.698 3.589 5.052 -0.215 H10 O0E 59 O0E H1 H24 H 0 1 N N N 23.260 1.600 46.990 -3.785 0.674 2.030 H1 O0E 60 O0E H5 H25 H 0 1 N N N 25.416 1.611 42.250 0.806 -0.471 -0.176 H5 O0E 61 O0E H9 H26 H 0 1 N N N 31.170 2.354 41.338 4.076 3.957 -2.475 H9 O0E 62 O0E H11 H28 H 0 1 N N N 21.505 2.731 46.496 -5.463 -0.921 1.249 H11 O0E 63 O0E H12 H29 H 0 1 N N N 20.805 7.908 47.039 -6.858 -3.861 -1.750 H12 O0E 64 O0E H13 H30 H 0 1 N N N 20.832 7.242 45.440 -8.248 -3.795 -0.809 H13 O0E 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O0E C21 C20 DOUB Y N 1 O0E C21 C22 SING Y N 2 O0E C20 C19 SING Y N 3 O0E C22 C23 DOUB Y N 4 O0E C19 C24 DOUB Y N 5 O0E C19 C18 SING Y N 6 O0E C23 C18 SING Y N 7 O0E C24 C SING Y N 8 O0E C18 C17 DOUB Y N 9 O0E C N SING N N 10 O0E C C1 DOUB Y N 11 O0E C17 C1 SING Y N 12 O0E C1 C2 SING N N 13 O0E C6 N2 SING Y N 14 O0E C6 C5 DOUB Y N 15 O0E N2 C7 SING Y N 16 O0E C2 N1 SING N N 17 O0E C2 O3 DOUB N N 18 O0E N1 C3 SING N N 19 O0E C5 C4 SING N N 20 O0E C5 N3 SING Y N 21 O0E C7 N3 DOUB Y N 22 O0E C4 C3 SING N N 23 O0E C3 C8 SING N N 24 O0E O2 C8 DOUB N N 25 O0E C8 N4 SING N N 26 O0E C13 C11 SING N N 27 O0E C11 N5 SING N N 28 O0E C11 C12 SING N N 29 O0E N4 C9 SING N N 30 O0E N4 C16 SING N N 31 O0E O1 C10 DOUB N N 32 O0E N5 C10 SING N N 33 O0E N6 C12 SING N N 34 O0E C10 C9 SING N N 35 O0E C9 C14 SING N N 36 O0E C16 C15 SING N N 37 O0E C12 O DOUB N N 38 O0E C14 C15 SING N N 39 O0E N H4 SING N N 40 O0E N H3 SING N N 41 O0E C11 H2 SING N N 42 O0E C13 H15 SING N N 43 O0E C13 H16 SING N N 44 O0E C13 H14 SING N N 45 O0E C14 H18 SING N N 46 O0E C14 H17 SING N N 47 O0E C15 H20 SING N N 48 O0E C15 H19 SING N N 49 O0E C16 H22 SING N N 50 O0E C16 H21 SING N N 51 O0E C17 H23 SING N N 52 O0E C20 H24 SING N N 53 O0E C21 H25 SING N N 54 O0E C22 H26 SING N N 55 O0E C23 H27 SING N N 56 O0E C24 H28 SING N N 57 O0E C3 H SING N N 58 O0E C4 H6 SING N N 59 O0E C4 H7 SING N N 60 O0E C6 H8 SING N N 61 O0E C7 H10 SING N N 62 O0E C9 H1 SING N N 63 O0E N1 H5 SING N N 64 O0E N2 H9 SING N N 65 O0E N5 H11 SING N N 66 O0E N6 H12 SING N N 67 O0E N6 H13 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O0E InChI InChI 1.03 "InChI=1S/C25H29N7O4/c1-14(22(27)33)30-24(35)21-7-4-8-32(21)25(36)20(11-17-12-28-13-29-17)31-23(34)18-9-15-5-2-3-6-16(15)10-19(18)26/h2-3,5-6,9-10,12-14,20-21H,4,7-8,11,26H2,1H3,(H2,27,33)(H,28,29)(H,30,35)(H,31,34)/t14-,20-,21-/m0/s1" O0E InChIKey InChI 1.03 ZPEDIFPSGYUDLA-WVFSVQOHSA-N O0E SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)[C@@H]1CCCN1C(=O)[C@H](Cc2c[nH]cn2)NC(=O)c3cc4ccccc4cc3N)C(N)=O" O0E SMILES CACTVS 3.385 "C[CH](NC(=O)[CH]1CCCN1C(=O)[CH](Cc2c[nH]cn2)NC(=O)c3cc4ccccc4cc3N)C(N)=O" O0E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)N)NC(=O)[C@@H]1CCCN1C(=O)[C@H](Cc2c[nH]cn2)NC(=O)c3cc4ccccc4cc3N" O0E SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)N)NC(=O)C1CCCN1C(=O)C(Cc2c[nH]cn2)NC(=O)c3cc4ccccc4cc3N" # _pdbx_chem_comp_identifier.comp_id O0E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-1-[(2~{S})-2-[(3-azanylnaphthalen-2-yl)carbonylamino]-3-(1~{H}-imidazol-4-yl)propanoyl]-~{N}-[(2~{S})-1-azanyl-1-oxidanylidene-propan-2-yl]pyrrolidine-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O0E "Create component" 2020-01-13 PDBE O0E "Initial release" 2021-01-27 RCSB ##