data_O1K # _chem_comp.id O1K _chem_comp.name "(5M)-5-(2,5-dichloropyrimidin-4-yl)-5H-pyrrolo[3,2-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H5 Cl2 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.086 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O1K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UP4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O1K C02 C1 C 0 1 Y N N N N N 24.454 42.897 79.147 -1.683 1.567 0.787 C02 O1K 1 O1K C03 C2 C 0 1 Y N N N N N 24.716 42.380 80.415 -1.711 0.413 0.016 C03 O1K 2 O1K C04 C3 C 0 1 Y N N N N N 25.371 43.181 81.391 -2.959 -0.038 -0.464 C04 O1K 3 O1K C06 C4 C 0 1 Y N N N N N 25.449 44.853 79.856 -3.975 1.737 0.581 C06 O1K 4 O1K C07 C5 C 0 1 Y N N N N N 25.505 42.399 82.580 -2.681 -1.250 -1.228 C07 O1K 5 O1K C08 C6 C 0 1 Y N N N N N 24.937 41.175 82.287 -1.354 -1.458 -1.173 C08 O1K 6 O1K C10 C7 C 0 1 Y N N N N N 23.808 40.104 80.332 0.608 -0.382 -0.175 C10 O1K 7 O1K C11 C8 C 0 1 Y N N N N N 24.170 39.475 79.123 1.319 -1.491 0.287 C11 O1K 8 O1K C12 C9 C 0 1 Y N N N N N 23.312 38.465 78.677 2.673 -1.349 0.530 C12 O1K 9 O1K C14 C10 C 0 1 Y N N N N N 21.920 38.806 80.489 2.548 0.855 -0.118 C14 O1K 10 O1K N01 N1 N 0 1 Y N N N N N 24.830 44.164 78.866 -2.823 2.190 1.042 N01 O1K 11 O1K N05 N2 N 0 1 Y N N N N N 25.743 44.433 81.114 -4.057 0.655 -0.163 N05 O1K 12 O1K N09 N3 N 0 1 Y N N N N N 24.477 41.151 80.982 -0.757 -0.474 -0.433 N09 O1K 13 O1K N13 N4 N 0 1 Y N N N N N 22.187 38.106 79.354 3.248 -0.174 0.318 N13 O1K 14 O1K N15 N5 N 0 1 Y N N N N N 22.695 39.769 81.009 1.254 0.765 -0.358 N15 O1K 15 O1K CL17 CL1 CL 0 0 N N N N N N 25.580 39.857 78.201 0.522 -3.011 0.550 CL17 O1K 16 O1K H1 H1 H 0 1 N N N N N N 23.958 42.294 78.401 -0.750 1.947 1.175 H1 O1K 17 O1K H2 H2 H 0 1 N N N N N N 25.746 45.863 79.614 -4.879 2.281 0.811 H2 O1K 18 O1K H3 H3 H 0 1 N N N N N N 25.956 42.702 83.513 -3.406 -1.865 -1.741 H3 O1K 19 O1K H4 H4 H 0 1 N N N N N N 24.862 40.350 82.980 -0.835 -2.281 -1.643 H4 O1K 20 O1K H5 H5 H 0 1 N N N N N N 23.551 37.949 77.759 3.255 -2.186 0.888 H5 O1K 21 O1K CL1 CL2 CL 0 0 N Y N N N N 20.396 38.529 81.369 3.349 2.374 -0.372 CL1 O1K 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O1K CL17 C11 SING N N 1 O1K C12 C11 DOUB Y N 2 O1K C12 N13 SING Y N 3 O1K N01 C02 DOUB Y N 4 O1K N01 C06 SING Y N 5 O1K C11 C10 SING Y N 6 O1K C02 C03 SING Y N 7 O1K N13 C14 DOUB Y N 8 O1K C06 N05 DOUB Y N 9 O1K C10 N09 SING N N 10 O1K C10 N15 DOUB Y N 11 O1K C03 N09 SING Y N 12 O1K C03 C04 DOUB Y N 13 O1K C14 N15 SING Y N 14 O1K N09 C08 SING Y N 15 O1K N05 C04 SING Y N 16 O1K C04 C07 SING Y N 17 O1K C08 C07 DOUB Y N 18 O1K C02 H1 SING N N 19 O1K C06 H2 SING N N 20 O1K C07 H3 SING N N 21 O1K C08 H4 SING N N 22 O1K C12 H5 SING N N 23 O1K C14 CL1 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O1K SMILES ACDLabs 12.01 "Clc1cnc(Cl)nc1n1ccc2ncncc21" O1K InChI InChI 1.03 "InChI=1S/C10H5Cl2N5/c11-6-3-14-10(12)16-9(6)17-2-1-7-8(17)4-13-5-15-7/h1-5H" O1K InChIKey InChI 1.03 MZVKJKCCHKCFTH-UHFFFAOYSA-N O1K SMILES_CANONICAL CACTVS 3.385 "Clc1ncc(Cl)c(n1)n2ccc3ncncc23" O1K SMILES CACTVS 3.385 "Clc1ncc(Cl)c(n1)n2ccc3ncncc23" O1K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cn(c2c1ncnc2)c3c(cnc(n3)Cl)Cl" O1K SMILES "OpenEye OEToolkits" 2.0.7 "c1cn(c2c1ncnc2)c3c(cnc(n3)Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier O1K "SYSTEMATIC NAME" ACDLabs 12.01 "(5M)-5-(2,5-dichloropyrimidin-4-yl)-5H-pyrrolo[3,2-d]pyrimidine" O1K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[2,5-bis(chloranyl)pyrimidin-4-yl]pyrrolo[3,2-d]pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O1K "Create component" 2022-04-15 RCSB O1K "Initial release" 2022-07-06 RCSB O1K "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id O1K _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #