data_O2E # _chem_comp.id O2E _chem_comp.name "(2~{S},3~{R})-2-[(2~{S},3~{R})-1-[(2~{R})-2-azanyl-3-oxidanylidene-propoxy]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C25 H32 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-21 _chem_comp.pdbx_modified_date 2021-01-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 564.608 _chem_comp.one_letter_code S _chem_comp.three_letter_code O2E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XV5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O2E C11 C1 C 0 1 N N S 17.945 -31.253 50.986 -1.605 0.003 -0.414 C11 O2E 1 O2E C18 C2 C 0 1 Y N N 24.378 -32.824 52.301 8.943 0.530 -0.337 C18 O2E 2 O2E C17 C3 C 0 1 Y N N 23.364 -33.708 51.956 7.615 0.440 0.084 C17 O2E 3 O2E C6 C4 C 0 1 N N R 15.220 -28.256 48.592 -5.559 -2.725 -0.652 C6 O2E 4 O2E O6 O1 O 0 1 N N N 16.669 -31.397 54.244 -2.112 -1.192 3.220 O6 O2E 5 O2E C5 C5 C 0 1 N N S 15.921 -28.586 49.921 -4.919 -1.412 -1.107 C5 O2E 6 O2E O5 O2 O 0 1 N N N 18.713 -30.831 53.848 -0.664 0.258 2.370 O5 O2E 7 O2E C16 C6 C 0 1 Y N N 23.542 -35.083 52.109 7.024 -0.804 0.237 C16 O2E 8 O2E O4 O3 O 0 1 N N N 13.814 -28.287 48.802 -5.168 -3.003 0.694 O4 O2E 9 O2E C2 C7 C 0 1 N N N 13.159 -27.620 52.180 -6.976 1.551 0.046 C2 O2E 10 O2E C15 C8 C 0 1 N N N 21.412 -35.800 51.039 4.808 0.057 0.319 C15 O2E 11 O2E C1 C9 C 0 1 N N N 15.285 -27.783 51.047 -5.480 -0.272 -0.297 C1 O2E 12 O2E C12 C10 C 0 1 N N S 19.035 -33.632 52.038 1.100 -0.354 0.371 C12 O2E 13 O2E C19 C11 C 0 1 N N N 24.177 -31.359 52.121 9.582 1.852 -0.496 C19 O2E 14 O2E C10 C12 C 0 1 N N N 17.569 -31.044 53.506 -1.583 -0.513 2.184 C10 O2E 15 O2E C21 C13 C 0 1 Y N N 25.745 -34.683 52.980 9.068 -1.868 -0.446 C21 O2E 16 O2E C22 C14 C 0 1 Y N N 24.740 -35.564 52.635 7.754 -1.957 -0.029 C22 O2E 17 O2E C20 C15 C 0 1 Y N N 25.570 -33.318 52.819 9.666 -0.634 -0.601 C20 O2E 18 O2E C7 C16 C 0 1 N N N 15.539 -29.195 47.445 -5.093 -3.862 -1.563 C7 O2E 19 O2E C8 C17 C 0 1 N N S 16.024 -30.080 50.226 -3.404 -1.485 -0.904 C8 O2E 20 O2E C9 C18 C 0 1 N N N 17.234 -30.851 52.063 -2.123 -0.707 0.817 C9 O2E 21 O2E C13 C19 C 0 1 N N N 20.064 -33.814 53.141 1.349 1.167 0.450 C13 O2E 22 O2E C14 C20 C 0 1 N N S 20.116 -35.827 51.845 3.414 0.033 0.892 C14 O2E 23 O2E O9 O4 O 0 1 N N N 21.421 -35.609 49.835 5.133 0.939 -0.449 O9 O2E 24 O2E O7 O5 O 0 1 N N N 25.246 -30.703 51.742 8.950 2.864 -0.265 O7 O2E 25 O2E O1 O6 O 0 1 N N N 15.719 -26.714 51.371 -5.026 -0.025 0.795 O1 O2E 26 O2E O2 O7 O 0 1 N N N 14.272 -28.401 51.658 -6.485 0.470 -0.789 O2 O2E 27 O2E CA C21 C 0 1 N N R 13.679 -26.558 53.138 -8.113 2.278 -0.677 CA O2E 28 O2E C C22 C 0 1 N N N 12.780 -26.346 54.359 -8.540 3.474 0.134 C O2E 29 O2E O O8 O 0 1 N N N 11.686 -26.906 54.478 -9.676 3.558 0.535 O O2E 30 O2E N N1 N 0 1 N N N 14.120 -25.361 52.439 -9.252 1.365 -0.840 N O2E 31 O2E N2 N2 N 0 1 N N N 16.095 -30.324 51.663 -3.082 -1.493 0.528 N2 O2E 32 O2E S1 S1 S 0 1 N N N 19.414 -32.197 50.984 -0.051 -0.746 -0.975 S1 O2E 33 O2E N3 N3 N 0 1 N N N 20.298 -35.258 53.181 2.778 1.360 0.755 N3 O2E 34 O2E N4 N4 N 0 1 N N N 22.526 -36.011 51.774 5.694 -0.900 0.660 N4 O2E 35 O2E O8 O9 O 0 1 N N N 23.093 -30.825 52.315 10.865 1.936 -0.897 O8 O2E 36 O2E C23 C23 C 0 1 N N N 19.033 -34.929 51.230 2.512 -0.924 0.073 C23 O2E 37 O2E C24 C24 C 0 1 N N R 17.276 -30.823 49.716 -2.725 -0.212 -1.461 C24 O2E 38 O2E C25 C25 C 0 1 N N N 18.255 -30.048 48.852 -3.697 0.970 -1.480 C25 O2E 39 O2E H1 H1 H 0 1 N N N 18.530 -30.322 51.008 -1.467 1.065 -0.214 H1 O2E 40 O2E H2 H2 H 0 1 N N N 22.431 -33.328 51.566 7.050 1.337 0.291 H2 O2E 41 O2E H3 H3 H 0 1 N N N 15.521 -27.240 48.296 -6.644 -2.638 -0.704 H3 O2E 42 O2E H4 H4 H 0 1 N N N 17.000 -31.480 55.131 -1.727 -1.032 4.092 H4 O2E 43 O2E H5 H5 H 0 1 N N N 16.953 -28.219 49.823 -5.136 -1.249 -2.163 H5 O2E 44 O2E H6 H6 H 0 1 N N N 13.587 -27.705 49.518 -4.228 -3.209 0.797 H6 O2E 45 O2E H7 H7 H 0 1 N N N 12.632 -27.133 51.346 -7.346 1.145 0.987 H7 O2E 46 O2E H8 H8 H 0 1 N N N 12.465 -28.285 52.714 -6.166 2.252 0.246 H8 O2E 47 O2E H9 H9 H 0 1 N N N 18.040 -33.454 52.471 0.724 -0.733 1.321 H9 O2E 48 O2E H10 H10 H 0 1 N N N 26.675 -35.061 53.379 9.630 -2.768 -0.650 H10 O2E 49 O2E H11 H11 H 0 1 N N N 24.882 -36.626 52.773 7.292 -2.926 0.091 H11 O2E 50 O2E H12 H12 H 0 1 N N N 26.361 -32.637 53.096 10.694 -0.569 -0.927 H12 O2E 51 O2E H13 H13 H 0 1 N N N 16.623 -29.192 47.259 -5.549 -4.798 -1.239 H13 O2E 52 O2E H14 H14 H 0 1 N N N 15.214 -30.214 47.704 -5.391 -3.650 -2.590 H14 O2E 53 O2E H15 H15 H 0 1 N N N 15.011 -28.861 46.540 -4.008 -3.949 -1.511 H15 O2E 54 O2E H16 H16 H 0 1 N N N 15.135 -30.581 49.815 -3.000 -2.374 -1.387 H16 O2E 55 O2E H17 H17 H 0 1 N N N 20.992 -33.275 52.901 1.108 1.632 -0.506 H17 O2E 56 O2E H18 H18 H 0 1 N N N 19.671 -33.456 54.104 0.738 1.602 1.241 H18 O2E 57 O2E H19 H19 H 0 1 N N N 19.743 -36.860 51.912 3.440 -0.270 1.939 H19 O2E 58 O2E H20 H20 H 0 1 N N N 14.598 -26.997 53.554 -7.768 2.608 -1.656 H20 O2E 59 O2E H21 H21 H 0 1 N N N 13.114 -25.683 55.144 -7.829 4.257 0.357 H21 O2E 60 O2E H22 H22 H 0 1 N N N 14.453 -24.691 53.102 -9.009 0.587 -1.434 H22 O2E 61 O2E H23 H23 H 0 1 N N N 14.857 -25.597 51.806 -9.590 1.045 0.055 H23 O2E 62 O2E H25 H25 H 0 1 N N N 19.650 -35.682 53.814 2.898 1.906 1.595 H25 O2E 63 O2E H27 H27 H 0 1 N N N 22.648 -36.939 52.126 5.409 -1.655 1.197 H27 O2E 64 O2E H28 H28 H 0 1 N N N 23.165 -29.892 52.149 11.240 2.823 -0.987 H28 O2E 65 O2E H29 H29 H 0 1 N N N 19.266 -34.720 50.175 2.602 -1.949 0.433 H29 O2E 66 O2E H30 H30 H 0 1 N N N 18.050 -35.418 51.298 2.742 -0.863 -0.990 H30 O2E 67 O2E H31 H31 H 0 1 N N N 16.949 -31.716 49.164 -2.308 -0.391 -2.452 H31 O2E 68 O2E H32 H32 H 0 1 N N N 19.091 -30.703 48.566 -4.012 1.197 -0.461 H32 O2E 69 O2E H33 H33 H 0 1 N N N 17.742 -29.692 47.946 -3.203 1.840 -1.910 H33 O2E 70 O2E H34 H34 H 0 1 N N N 18.641 -29.187 49.417 -4.570 0.713 -2.081 H34 O2E 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O2E C7 C6 SING N N 1 O2E C6 O4 SING N N 2 O2E C6 C5 SING N N 3 O2E C25 C24 SING N N 4 O2E C24 C8 SING N N 5 O2E C24 C11 SING N N 6 O2E O9 C15 DOUB N N 7 O2E C5 C8 SING N N 8 O2E C5 C1 SING N N 9 O2E C8 N2 SING N N 10 O2E S1 C11 SING N N 11 O2E S1 C12 SING N N 12 O2E C11 C9 SING N N 13 O2E C15 N4 SING N N 14 O2E C15 C14 SING N N 15 O2E C1 O1 DOUB N N 16 O2E C1 O2 SING N N 17 O2E C23 C14 SING N N 18 O2E C23 C12 SING N N 19 O2E O2 C2 SING N N 20 O2E N2 C9 DOUB N N 21 O2E O7 C19 DOUB N N 22 O2E N4 C16 SING N N 23 O2E C14 N3 SING N N 24 O2E C17 C16 DOUB Y N 25 O2E C17 C18 SING Y N 26 O2E C12 C13 SING N N 27 O2E C9 C10 SING N N 28 O2E C16 C22 SING Y N 29 O2E C19 C18 SING N N 30 O2E C19 O8 SING N N 31 O2E C2 CA SING N N 32 O2E C18 C20 DOUB Y N 33 O2E N CA SING N N 34 O2E C22 C21 DOUB Y N 35 O2E C20 C21 SING Y N 36 O2E CA C SING N N 37 O2E C13 N3 SING N N 38 O2E C10 O5 DOUB N N 39 O2E C10 O6 SING N N 40 O2E C O DOUB N N 41 O2E C11 H1 SING N N 42 O2E C17 H2 SING N N 43 O2E C6 H3 SING N N 44 O2E O6 H4 SING N N 45 O2E C5 H5 SING N N 46 O2E O4 H6 SING N N 47 O2E C2 H7 SING N N 48 O2E C2 H8 SING N N 49 O2E C12 H9 SING N N 50 O2E C21 H10 SING N N 51 O2E C22 H11 SING N N 52 O2E C20 H12 SING N N 53 O2E C7 H13 SING N N 54 O2E C7 H14 SING N N 55 O2E C7 H15 SING N N 56 O2E C8 H16 SING N N 57 O2E C13 H17 SING N N 58 O2E C13 H18 SING N N 59 O2E C14 H19 SING N N 60 O2E CA H20 SING N N 61 O2E C H21 SING N N 62 O2E N H22 SING N N 63 O2E N H23 SING N N 64 O2E N3 H25 SING N N 65 O2E N4 H27 SING N N 66 O2E O8 H28 SING N N 67 O2E C23 H29 SING N N 68 O2E C23 H30 SING N N 69 O2E C24 H31 SING N N 70 O2E C25 H32 SING N N 71 O2E C25 H33 SING N N 72 O2E C25 H34 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O2E InChI InChI 1.03 "InChI=1S/C25H32N4O9S/c1-11-19(18(12(2)31)25(37)38-10-14(26)9-30)29-20(24(35)36)21(11)39-16-7-17(27-8-16)22(32)28-15-5-3-4-13(6-15)23(33)34/h3-6,9,11-12,14,16-19,21,27,31H,7-8,10,26H2,1-2H3,(H,28,32)(H,33,34)(H,35,36)/t11-,12-,14+,16+,17+,18-,19-,21+/m1/s1" O2E InChIKey InChI 1.03 PARUKYQAUVQKHU-OKSCULGPSA-N O2E SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H]([C@@H]1N=C([C@@H](S[C@@H]2CN[C@@H](C2)C(=O)Nc3cccc(c3)C(O)=O)[C@@H]1C)C(O)=O)C(=O)OC[C@@H](N)C=O" O2E SMILES CACTVS 3.385 "C[CH](O)[CH]([CH]1N=C([CH](S[CH]2CN[CH](C2)C(=O)Nc3cccc(c3)C(O)=O)[CH]1C)C(O)=O)C(=O)OC[CH](N)C=O" O2E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H](N=C(C1S[C@H]2C[C@H](NC2)C(=O)Nc3cccc(c3)C(=O)O)C(=O)O)[C@@H]([C@@H](C)O)C(=O)OC[C@H](C=O)N" O2E SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(=NC1C(C(C)O)C(=O)OCC(C=O)N)C(=O)O)SC2CC(NC2)C(=O)Nc3cccc(c3)C(=O)O" # _pdbx_chem_comp_identifier.comp_id O2E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R})-2-[(2~{S},3~{R})-1-[(2~{R})-2-azanyl-3-oxidanylidene-propoxy]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O2E "Create component" 2020-01-21 PDBE O2E "Modify component comp_id" 2020-01-22 PDBE O2E "Initial release" 2021-02-03 RCSB ##