data_O39 # _chem_comp.id O39 _chem_comp.name "(N-[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methyl]-3-{[(pyridin-3-yl)methyl]sulfanyl}propanamide)bis[2-(quinolin-2-yl-kappaN)phenyl-kappaC~1~]iridium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C50 H40 Ir N6 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-20 _chem_comp.pdbx_modified_date 2022-08-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 965.174 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O39 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7UAY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O39 C13 C1 C 0 1 Y N N -25.568 -13.166 -12.223 ? ? ? C13 O39 1 O39 C15 C2 C 0 1 Y N N -28.594 -13.977 -9.948 ? ? ? C15 O39 2 O39 C16 C3 C 0 1 Y N N -29.557 -12.416 -7.708 ? ? ? C16 O39 3 O39 C17 C4 C 0 1 Y N N -28.092 -14.072 -8.634 ? ? ? C17 O39 4 O39 C18 C5 C 0 1 Y N N -29.548 -13.059 -10.061 ? ? ? C18 O39 5 O39 C01 C6 C 0 1 Y N N -29.064 -17.001 -12.950 ? ? ? C01 O39 6 O39 C02 C7 C 0 1 Y N N -27.505 -16.366 -15.210 ? ? ? C02 O39 7 O39 C03 C8 C 0 1 Y N N -28.154 -15.957 -12.955 ? ? ? C03 O39 8 O39 C04 C9 C 0 1 Y N N -29.270 -17.683 -14.133 ? ? ? C04 O39 9 O39 C05 C10 C 0 1 Y N N -28.498 -17.362 -15.262 ? ? ? C05 O39 10 O39 C06 C11 C 0 1 Y N N -27.303 -15.693 -13.998 ? ? ? C06 O39 11 O39 C09 C12 C 0 1 Y N N -24.703 -12.723 -13.257 ? ? ? C09 O39 12 O39 C11 C13 C 0 1 Y N N -25.622 -14.253 -14.761 ? ? ? C11 O39 13 O39 C19 C14 C 0 1 Y N N -30.051 -12.267 -9.004 ? ? ? C19 O39 14 O39 C20 C15 C 0 1 Y N N -28.566 -13.358 -7.526 ? ? ? C20 O39 15 O39 C21 C16 C 0 1 Y N N -29.896 -13.067 -11.408 ? ? ? C21 O39 16 O39 C22 C17 C 0 1 Y N N -30.857 -12.737 -13.766 ? ? ? C22 O39 17 O39 C24 C18 C 0 1 Y N N -30.877 -12.116 -11.597 ? ? ? C24 O39 18 O39 C26 C19 C 0 1 Y N N -29.828 -13.693 -13.501 ? ? ? C26 O39 19 O39 C27 C20 C 0 1 Y N N -28.538 -18.338 -7.952 ? ? ? C27 O39 20 O39 C28 C21 C 0 1 Y N N -29.341 -16.486 -9.239 ? ? ? C28 O39 21 O39 C29 C22 C 0 1 Y N N -27.260 -17.247 -9.702 ? ? ? C29 O39 22 O39 C30 C23 C 0 1 Y N N -27.375 -18.243 -8.722 ? ? ? C30 O39 23 O39 C32 C24 C 0 1 Y N N -26.075 -17.115 -10.518 ? ? ? C32 O39 24 O39 C33 C25 C 0 1 Y N N -23.844 -16.964 -11.984 ? ? ? C33 O39 25 O39 C36 C26 C 0 1 Y N N -23.856 -17.971 -11.034 ? ? ? C36 O39 26 O39 C37 C27 C 0 1 Y N N -24.924 -16.101 -12.097 ? ? ? C37 O39 27 O39 C38 C28 C 0 1 N N N -22.756 -16.755 -12.821 ? ? ? C38 O39 28 O39 C40 C29 C 0 1 Y N N -24.460 -11.505 -10.840 ? ? ? C40 O39 29 O39 C41 C30 C 0 1 Y N N -23.627 -11.082 -11.873 ? ? ? C41 O39 30 O39 C42 C31 C 0 1 Y N N -23.758 -11.708 -13.103 ? ? ? C42 O39 31 O39 C44 C32 C 0 1 Y N N -30.130 -14.067 -16.027 ? ? ? C44 O39 32 O39 C45 C33 C 0 1 Y N N -31.113 -13.111 -16.171 ? ? ? C45 O39 33 O39 C48 C34 C 0 1 N N N -20.527 -16.903 -11.254 ? ? ? C48 O39 34 O39 C49 C35 C 0 1 N N N -20.369 -18.331 -10.673 ? ? ? C49 O39 35 O39 C50 C36 C 0 1 N N N -19.087 -18.774 -9.924 ? ? ? C50 O39 36 O39 C52 C37 C 0 1 N N N -19.748 -21.535 -9.181 ? ? ? C52 O39 37 O39 C54 C38 C 0 1 Y N N -19.348 -22.107 -10.560 ? ? ? C54 O39 38 O39 C55 C39 C 0 1 Y N N -20.120 -22.303 -11.711 ? ? ? C55 O39 39 O39 C56 C40 C 0 1 Y N N -17.996 -22.471 -10.586 ? ? ? C56 O39 40 O39 C58 C41 C 0 1 Y N N -18.158 -23.194 -12.809 ? ? ? C58 O39 41 O39 C59 C42 C 0 1 Y N N -19.515 -22.852 -12.849 ? ? ? C59 O39 42 O39 C08 C43 C 0 1 Y N N -26.473 -14.637 -13.722 ? ? ? C08 O39 43 O39 C12 C44 C 0 1 Y N N -24.711 -13.247 -14.540 ? ? ? C12 O39 44 O39 C25 C45 C 0 1 Y N N -31.427 -11.917 -12.818 ? ? ? C25 O39 45 O39 C31 C46 C 0 1 Y N N -29.550 -17.408 -8.209 ? ? ? C31 O39 46 O39 C35 C47 C 0 1 Y N N -25.031 -18.015 -10.307 ? ? ? C35 O39 47 O39 C39 C48 C 0 1 Y N N -25.405 -12.524 -11.002 ? ? ? C39 O39 48 O39 C43 C49 C 0 1 Y N N -29.589 -14.264 -14.755 ? ? ? C43 O39 49 O39 C46 C50 C 0 1 Y N N -31.464 -12.459 -15.004 ? ? ? C46 O39 50 O39 N10 N1 N 0 1 Y N N -26.379 -14.229 -12.405 ? ? ? N10 O39 51 O39 N14 N2 N 0 1 Y N N -28.174 -16.324 -9.905 ? ? ? N14 O39 52 O39 N23 N3 N 0 1 Y N N -29.306 -13.993 -12.206 ? ? ? N23 O39 53 O39 N34 N4 N 0 1 Y N N -26.120 -16.162 -11.455 ? ? ? N34 O39 54 O39 N47 N5 N 0 1 N N N -21.483 -16.222 -12.149 ? ? ? N47 O39 55 O39 N57 N6 N 0 1 Y N N -17.441 -22.997 -11.692 ? ? ? N57 O39 56 O39 O53 O1 O 0 1 N N N -19.688 -16.098 -10.947 ? ? ? O53 O39 57 O39 S51 S1 S 0 1 N N N -19.239 -19.964 -8.692 ? ? ? S51 O39 58 O39 IR07 IR1 IR 0 0 N N N -27.782 -15.073 -11.352 ? ? ? IR07 O39 59 O39 H1 H1 H 0 1 N N N -29.932 -11.823 -6.887 ? ? ? H1 O39 60 O39 H2 H2 H 0 1 N N N -27.271 -14.754 -8.467 ? ? ? H2 O39 61 O39 H3 H3 H 0 1 N N N -29.595 -17.273 -12.050 ? ? ? H3 O39 62 O39 H4 H4 H 0 1 N N N -26.914 -16.127 -16.082 ? ? ? H4 O39 63 O39 H5 H5 H 0 1 N N N -30.020 -18.458 -14.190 ? ? ? H5 O39 64 O39 H6 H6 H 0 1 N N N -28.670 -17.890 -16.188 ? ? ? H6 O39 65 O39 H7 H7 H 0 1 N N N -25.679 -14.739 -15.724 ? ? ? H7 O39 66 O39 H8 H8 H 0 1 N N N -30.825 -11.540 -9.201 ? ? ? H8 O39 67 O39 H9 H9 H 0 1 N N N -28.161 -13.543 -6.542 ? ? ? H9 O39 68 O39 H10 H10 H 0 1 N N N -31.211 -11.522 -10.759 ? ? ? H10 O39 69 O39 H11 H11 H 0 1 N N N -28.650 -19.097 -7.192 ? ? ? H11 O39 70 O39 H12 H12 H 0 1 N N N -30.171 -15.857 -9.524 ? ? ? H12 O39 71 O39 H13 H13 H 0 1 N N N -26.564 -18.938 -8.562 ? ? ? H13 O39 72 O39 H14 H14 H 0 1 N N N -23.032 -18.652 -10.877 ? ? ? H14 O39 73 O39 H15 H15 H 0 1 N N N -24.798 -15.276 -12.782 ? ? ? H15 O39 74 O39 H16 H16 H 0 1 N N N -23.058 -16.031 -13.592 ? ? ? H16 O39 75 O39 H17 H17 H 0 1 N N N -22.508 -17.715 -13.297 ? ? ? H17 O39 76 O39 H18 H18 H 0 1 N N N -24.373 -11.027 -9.875 ? ? ? H18 O39 77 O39 H19 H19 H 0 1 N N N -22.904 -10.294 -11.721 ? ? ? H19 O39 78 O39 H20 H20 H 0 1 N N N -23.135 -11.413 -13.934 ? ? ? H20 O39 79 O39 H21 H21 H 0 1 N N N -29.789 -14.646 -16.872 ? ? ? H21 O39 80 O39 H22 H22 H 0 1 N N N -31.573 -12.889 -17.122 ? ? ? H22 O39 81 O39 H23 H23 H 0 1 N N N -21.202 -18.471 -9.968 ? ? ? H23 O39 82 O39 H24 H24 H 0 1 N N N -20.486 -19.023 -11.520 ? ? ? H24 O39 83 O39 H25 H25 H 0 1 N N N -18.389 -19.170 -10.677 ? ? ? H25 O39 84 O39 H26 H26 H 0 1 N N N -18.654 -17.876 -9.459 ? ? ? H26 O39 85 O39 H27 H27 H 0 1 N N N -20.848 -21.531 -9.151 ? ? ? H27 O39 86 O39 H28 H28 H 0 1 N N N -19.363 -22.237 -8.427 ? ? ? H28 O39 87 O39 H29 H29 H 0 1 N N N -21.166 -22.035 -11.722 ? ? ? H29 O39 88 O39 H30 H30 H 0 1 N N N -17.390 -22.327 -9.704 ? ? ? H30 O39 89 O39 H31 H31 H 0 1 N N N -17.685 -23.619 -13.682 ? ? ? H31 O39 90 O39 H32 H32 H 0 1 N N N -20.090 -23.010 -13.749 ? ? ? H32 O39 91 O39 H33 H33 H 0 1 N N N -24.047 -12.890 -15.313 ? ? ? H33 O39 92 O39 H34 H34 H 0 1 N N N -32.213 -11.205 -13.023 ? ? ? H34 O39 93 O39 H35 H35 H 0 1 N N N -30.462 -17.402 -7.631 ? ? ? H35 O39 94 O39 H36 H36 H 0 1 N N N -25.145 -18.774 -9.548 ? ? ? H36 O39 95 O39 H37 H37 H 0 1 N N N -26.019 -12.817 -10.163 ? ? ? H37 O39 96 O39 H38 H38 H 0 1 N N N -28.819 -15.021 -14.735 ? ? ? H38 O39 97 O39 H39 H39 H 0 1 N N N -32.236 -11.705 -15.044 ? ? ? H39 O39 98 O39 H40 H40 H 0 1 N N N -21.268 -15.266 -12.348 ? ? ? H40 O39 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O39 C45 C44 SING Y N 1 O39 C45 C46 DOUB Y N 2 O39 C44 C43 DOUB Y N 3 O39 C05 C02 DOUB Y N 4 O39 C05 C04 SING Y N 5 O39 C02 C06 SING Y N 6 O39 C46 C22 SING Y N 7 O39 C11 C12 DOUB Y N 8 O39 C11 C08 SING Y N 9 O39 C43 C26 SING Y N 10 O39 C12 C09 SING Y N 11 O39 C04 C01 DOUB Y N 12 O39 C06 C08 SING N N 13 O39 C06 C03 DOUB Y N 14 O39 C22 C26 DOUB Y N 15 O39 C22 C25 SING Y N 16 O39 C08 N10 DOUB Y N 17 O39 C26 N23 SING Y N 18 O39 C09 C42 SING Y N 19 O39 C09 C13 DOUB Y N 20 O39 C42 C41 DOUB Y N 21 O39 C03 C01 SING Y N 22 O39 C03 IR07 SING N N 23 O39 C59 C58 DOUB Y N 24 O39 C59 C55 SING Y N 25 O39 C38 N47 SING N N 26 O39 C38 C33 SING N N 27 O39 C25 C24 DOUB Y N 28 O39 C58 N57 SING Y N 29 O39 N10 C13 SING Y N 30 O39 N10 IR07 SING N N 31 O39 C13 C39 SING Y N 32 O39 N23 C21 DOUB Y N 33 O39 N23 IR07 SING N N 34 O39 N47 C48 SING N N 35 O39 C37 C33 DOUB Y N 36 O39 C37 N34 SING Y N 37 O39 C33 C36 SING Y N 38 O39 C41 C40 SING Y N 39 O39 C55 C54 DOUB Y N 40 O39 N57 C56 DOUB Y N 41 O39 C24 C21 SING Y N 42 O39 N34 IR07 SING N N 43 O39 N34 C32 DOUB Y N 44 O39 C21 C18 SING N N 45 O39 IR07 C15 SING N N 46 O39 IR07 N14 SING N N 47 O39 C48 O53 DOUB N N 48 O39 C48 C49 SING N N 49 O39 C36 C35 DOUB Y N 50 O39 C39 C40 DOUB Y N 51 O39 C49 C50 SING N N 52 O39 C56 C54 SING Y N 53 O39 C54 C52 SING N N 54 O39 C32 C35 SING Y N 55 O39 C32 C29 SING N N 56 O39 C18 C15 DOUB Y N 57 O39 C18 C19 SING Y N 58 O39 C15 C17 SING Y N 59 O39 C50 S51 SING N N 60 O39 N14 C29 DOUB Y N 61 O39 N14 C28 SING Y N 62 O39 C29 C30 SING Y N 63 O39 C28 C31 DOUB Y N 64 O39 C52 S51 SING N N 65 O39 C19 C16 DOUB Y N 66 O39 C30 C27 DOUB Y N 67 O39 C17 C20 DOUB Y N 68 O39 C31 C27 SING Y N 69 O39 C16 C20 SING Y N 70 O39 C16 H1 SING N N 71 O39 C17 H2 SING N N 72 O39 C01 H3 SING N N 73 O39 C02 H4 SING N N 74 O39 C04 H5 SING N N 75 O39 C05 H6 SING N N 76 O39 C11 H7 SING N N 77 O39 C19 H8 SING N N 78 O39 C20 H9 SING N N 79 O39 C24 H10 SING N N 80 O39 C27 H11 SING N N 81 O39 C28 H12 SING N N 82 O39 C30 H13 SING N N 83 O39 C36 H14 SING N N 84 O39 C37 H15 SING N N 85 O39 C38 H16 SING N N 86 O39 C38 H17 SING N N 87 O39 C40 H18 SING N N 88 O39 C41 H19 SING N N 89 O39 C42 H20 SING N N 90 O39 C44 H21 SING N N 91 O39 C45 H22 SING N N 92 O39 C49 H23 SING N N 93 O39 C49 H24 SING N N 94 O39 C50 H25 SING N N 95 O39 C50 H26 SING N N 96 O39 C52 H27 SING N N 97 O39 C52 H28 SING N N 98 O39 C55 H29 SING N N 99 O39 C56 H30 SING N N 100 O39 C58 H31 SING N N 101 O39 C59 H32 SING N N 102 O39 C12 H33 SING N N 103 O39 C25 H34 SING N N 104 O39 C31 H35 SING N N 105 O39 C35 H36 SING N N 106 O39 C39 H37 SING N N 107 O39 C43 H38 SING N N 108 O39 C46 H39 SING N N 109 O39 N47 H40 SING N N 110 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O39 SMILES ACDLabs 12.01 "O=C(NCc1ccc2c3ccccn3[Ir]34(c5ccccc5c5ccc6ccccc6n53)(c3ccccc3c3ccc5ccccc5n34)n2c1)CCSCc1cccnc1" O39 InChI InChI 1.06 "InChI=1S/C20H20N4OS.2C15H10N.Ir/c25-20(8-11-26-15-17-4-3-9-21-12-17)24-14-16-6-7-19(23-13-16)18-5-1-2-10-22-18;2*1-2-6-12(7-3-1)15-11-10-13-8-4-5-9-14(13)16-15;/h1-7,9-10,12-13H,8,11,14-15H2,(H,24,25);2*1-6,8-11H;" O39 InChIKey InChI 1.06 PZEUMNNZEIBAQI-UHFFFAOYSA-N O39 SMILES_CANONICAL CACTVS 3.385 "O=C(CCSCc1cccnc1)NCc2ccc(nc2)c3ccccn3.[Ir](c4ccccc4c5ccc6ccccc6n5)c7ccccc7c8ccc9ccccc9n8" O39 SMILES CACTVS 3.385 "O=C(CCSCc1cccnc1)NCc2ccc(nc2)c3ccccn3.[Ir](c4ccccc4c5ccc6ccccc6n5)c7ccccc7c8ccc9ccccc9n8" O39 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C=CC3=[N]2[Ir]45(c6c3cccc6)(c7ccccc7C8=[N]4c9ccccc9C=C8)[N]1=C(C=CC=C1)C1=[N]5C=C(C=C1)CNC(=O)CCSCc1cccnc1" O39 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C=CC3=[N]2[Ir]45(c6c3cccc6)(c7ccccc7C8=[N]4c9ccccc9C=C8)[N]1=C(C=CC=C1)C1=[N]5C=C(C=C1)CNC(=O)CCSCc1cccnc1" # _pdbx_chem_comp_identifier.comp_id O39 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(N-[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methyl]-3-{[(pyridin-3-yl)methyl]sulfanyl}propanamide)bis[2-(quinolin-2-yl-kappaN)phenyl-kappaC~1~]iridium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O39 "Create component" 2022-04-20 RCSB O39 "Initial release" 2022-08-31 RCSB #