data_O4O # _chem_comp.id O4O _chem_comp.name "1,4-dimethyl-3-(oxan-4-ylmethyl)-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-benzimidazol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H26 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-20 _chem_comp.pdbx_modified_date 2023-12-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.452 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O4O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8HZA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O4O C10 C1 C 0 1 Y N N N N N 2.158 -2.519 83.523 1.355 0.195 0.324 C10 O4O 1 O4O C13 C2 C 0 1 Y N N N N N 1.474 -0.909 85.487 0.729 2.408 -0.382 C13 O4O 2 O4O C15 C3 C 0 1 Y N N N N N -0.266 -2.669 84.586 -0.935 0.900 0.512 C15 O4O 3 O4O C17 C4 C 0 1 N N N N N N 0.495 -4.305 82.572 -0.338 -1.414 1.261 C17 O4O 4 O4O C22 C5 C 0 1 N N N N N N -1.120 -0.278 87.409 -1.864 4.273 -0.569 C22 O4O 5 O4O C24 C6 C 0 1 N N N N N N -3.628 -3.701 83.353 -3.545 -1.093 0.213 C24 O4O 6 O4O C26 C7 C 0 1 N N N N N N -4.590 -2.015 81.880 -4.769 -3.203 -0.315 C26 O4O 7 O4O C28 C8 C 0 1 N N N N N N -4.764 -4.358 81.238 -5.003 -1.332 -1.799 C28 O4O 8 O4O C1 C9 C 0 1 N N N N N N 6.471 -5.404 82.597 6.213 -0.247 0.437 C1 O4O 9 O4O C2 C10 C 0 1 N N N N N N 6.007 -6.311 83.722 6.413 -0.671 -1.016 C2 O4O 10 O4O C3 C11 C 0 1 N N N N N N 5.410 -5.491 84.855 5.352 0.009 -1.893 C3 O4O 11 O4O C4 C12 C 0 1 N N N N N N 4.238 -4.634 84.420 3.997 -0.498 -1.443 C4 O4O 12 O4O C5 C13 C 0 1 N N N N N N 4.250 -4.027 83.008 3.756 -0.609 -0.001 C5 O4O 13 O4O C6 C14 C 0 1 N N N N N N 5.331 -4.542 82.056 4.802 -0.496 0.884 C6 O4O 14 O4O C9 C15 C 0 1 N N N N N N 3.212 -2.994 82.541 2.392 -0.841 0.500 C9 O4O 15 O4O C12 C16 C 0 1 Y N N N N N 2.510 -1.394 84.489 1.695 1.442 -0.211 C12 O4O 16 O4O C14 C17 C 0 1 Y N N N N N 0.085 -1.568 85.520 -0.588 2.145 -0.023 C14 O4O 17 O4O C16 C18 C 0 1 Y N N N N N 0.780 -3.169 83.558 0.033 -0.072 0.685 C16 O4O 18 O4O C19 C19 C 0 1 N N N N N N -2.143 -2.215 85.983 -2.766 2.152 0.404 C19 O4O 19 O4O C23 C20 C 0 1 N N N N N N -2.379 -4.142 84.225 -3.104 -0.149 1.333 C23 O4O 20 O4O C25 C21 C 0 1 N N N N N N -3.427 -2.360 82.807 -4.263 -2.304 0.816 C25 O4O 21 O4O C29 C22 C 0 1 N N N N N N -3.763 -4.758 82.309 -4.506 -0.358 -0.728 C29 O4O 22 O4O N18 N1 N 0 1 N N N N N N -1.062 -1.292 86.372 -1.754 2.898 -0.075 N18 O4O 23 O4O N20 N2 N 0 1 N N N N N N -1.649 -3.061 84.873 -2.304 0.940 0.767 N20 O4O 24 O4O O7 O1 O 0 1 N N N N N N 5.507 -3.957 80.807 4.552 -0.614 2.196 O7 O4O 25 O4O O8 O2 O 0 1 N N N N N N 3.352 -4.473 85.196 3.142 -0.800 -2.249 O8 O4O 26 O4O O11 O3 O 0 1 N N N N N N 3.223 -2.533 81.444 2.119 -1.887 1.059 O11 O4O 27 O4O O21 O4 O 0 1 N N N N N N -3.219 -2.261 86.474 -3.923 2.517 0.496 O21 O4O 28 O4O O27 O5 O 0 1 N N N N N N -5.501 -3.170 81.666 -5.634 -2.451 -1.169 O27 O4O 29 O4O H1 H1 H 0 1 N N N N N N 1.711 -0.106 86.169 0.994 3.369 -0.795 H1 O4O 30 O4O H2 H2 H 0 1 N N N N N N 0.773 -5.266 83.029 -0.130 -1.421 2.331 H2 O4O 31 O4O H3 H3 H 0 1 N N N N N N -0.576 -4.314 82.323 -1.400 -1.600 1.096 H3 O4O 32 O4O H4 H4 H 0 1 N N N N N N 1.083 -4.151 81.655 0.247 -2.193 0.772 H4 O4O 33 O4O H5 H5 H 0 1 N N N N N N -2.110 -0.298 87.888 -2.077 4.260 -1.638 H5 O4O 34 O4O H6 H6 H 0 1 N N N N N N -0.345 -0.480 88.163 -2.670 4.784 -0.043 H6 O4O 35 O4O H7 H7 H 0 1 N N N N N N -0.949 0.713 86.963 -0.925 4.798 -0.393 H7 O4O 36 O4O H8 H8 H 0 1 N N N N N N -4.518 -3.710 83.999 -2.672 -1.428 -0.347 H8 O4O 37 O4O H9 H9 H 0 1 N N N N N N -4.185 -1.698 80.907 -3.922 -3.574 -0.892 H9 O4O 38 O4O H10 H10 H 0 1 N N N N N N -5.164 -1.189 82.325 -5.318 -4.045 0.107 H10 O4O 39 O4O H11 H11 H 0 1 N N N N N N -5.470 -5.185 81.071 -5.720 -0.826 -2.445 H11 O4O 40 O4O H12 H12 H 0 1 N N N N N N -4.229 -4.138 80.302 -4.159 -1.679 -2.395 H12 O4O 41 O4O H13 H13 H 0 1 N N N N N N 6.867 -6.025 81.780 6.894 -0.813 1.072 H13 O4O 42 O4O H14 H14 H 0 1 N N N N N N 7.267 -4.745 82.976 6.435 0.816 0.533 H14 O4O 43 O4O H15 H15 H 0 1 N N N N N N 5.245 -7.005 83.337 7.407 -0.372 -1.350 H15 O4O 44 O4O H16 H16 H 0 1 N N N N N N 6.866 -6.884 84.103 6.312 -1.754 -1.097 H16 O4O 45 O4O H17 H17 H 0 1 N N N N N N 5.067 -6.179 85.641 5.404 1.090 -1.764 H17 O4O 46 O4O H18 H18 H 0 1 N N N N N N 6.193 -4.833 85.260 5.516 -0.248 -2.939 H18 O4O 47 O4O H19 H19 H 0 1 N N N N N N 3.492 -0.944 84.464 2.718 1.648 -0.490 H19 O4O 48 O4O H20 H20 H 0 1 N N N N N N -2.738 -4.825 85.009 -3.983 0.264 1.827 H20 O4O 49 O4O H21 H21 H 0 1 N N N N N N -1.678 -4.676 83.566 -2.506 -0.701 2.058 H21 O4O 50 O4O H22 H22 H 0 1 N N N N N N -2.484 -2.331 82.241 -3.568 -2.864 1.443 H22 O4O 51 O4O H23 H23 H 0 1 N N N N N N -3.383 -1.631 83.629 -5.106 -1.966 1.418 H23 O4O 52 O4O H24 H24 H 0 1 N N N N N N -4.102 -5.690 82.785 -5.354 0.021 -0.158 H24 O4O 53 O4O H25 H25 H 0 1 N N N N N N -2.783 -4.923 81.838 -3.985 0.472 -1.204 H25 O4O 54 O4O H26 H26 H 0 1 N N N N N N 4.815 -3.325 80.653 3.649 -0.847 2.452 H26 O4O 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O4O O7 C6 SING N N 1 O4O C28 O27 SING N N 2 O4O C28 C29 SING N N 3 O4O O11 C9 DOUB N N 4 O4O O27 C26 SING N N 5 O4O C26 C25 SING N N 6 O4O C6 C1 SING N N 7 O4O C6 C5 DOUB N N 8 O4O C29 C24 SING N N 9 O4O C9 C5 SING N N 10 O4O C9 C10 SING N N 11 O4O C17 C16 SING N N 12 O4O C1 C2 SING N N 13 O4O C25 C24 SING N N 14 O4O C5 C4 SING N N 15 O4O C24 C23 SING N N 16 O4O C10 C16 DOUB Y N 17 O4O C10 C12 SING Y N 18 O4O C16 C15 SING Y N 19 O4O C2 C3 SING N N 20 O4O C23 N20 SING N N 21 O4O C4 C3 SING N N 22 O4O C4 O8 DOUB N N 23 O4O C12 C13 DOUB Y N 24 O4O C15 N20 SING N N 25 O4O C15 C14 DOUB Y N 26 O4O N20 C19 SING N N 27 O4O C13 C14 SING Y N 28 O4O C14 N18 SING N N 29 O4O C19 N18 SING N N 30 O4O C19 O21 DOUB N N 31 O4O N18 C22 SING N N 32 O4O C13 H1 SING N N 33 O4O C17 H2 SING N N 34 O4O C17 H3 SING N N 35 O4O C17 H4 SING N N 36 O4O C22 H5 SING N N 37 O4O C22 H6 SING N N 38 O4O C22 H7 SING N N 39 O4O C24 H8 SING N N 40 O4O C26 H9 SING N N 41 O4O C26 H10 SING N N 42 O4O C28 H11 SING N N 43 O4O C28 H12 SING N N 44 O4O C1 H13 SING N N 45 O4O C1 H14 SING N N 46 O4O C2 H15 SING N N 47 O4O C2 H16 SING N N 48 O4O C3 H17 SING N N 49 O4O C3 H18 SING N N 50 O4O C12 H19 SING N N 51 O4O C23 H20 SING N N 52 O4O C23 H21 SING N N 53 O4O C25 H22 SING N N 54 O4O C25 H23 SING N N 55 O4O C29 H24 SING N N 56 O4O C29 H25 SING N N 57 O4O O7 H26 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O4O InChI InChI 1.06 "InChI=1S/C22H26N2O5/c1-13-15(21(27)19-17(25)4-3-5-18(19)26)6-7-16-20(13)24(22(28)23(16)2)12-14-8-10-29-11-9-14/h6-7,14,25H,3-5,8-12H2,1-2H3" O4O InChIKey InChI 1.06 ZOSHTHBGGSWZFP-UHFFFAOYSA-N O4O SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(CC2CCOCC2)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O" O4O SMILES CACTVS 3.385 "CN1C(=O)N(CC2CCOCC2)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O" O4O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1N(C(=O)N2C)CC3CCOCC3)C(=O)C4=C(CCCC4=O)O" O4O SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1N(C(=O)N2C)CC3CCOCC3)C(=O)C4=C(CCCC4=O)O" # _pdbx_chem_comp_identifier.comp_id O4O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1,4-dimethyl-3-(oxan-4-ylmethyl)-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-benzimidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O4O "Create component" 2023-01-20 PDBJ O4O "Initial release" 2023-12-20 RCSB #