data_O4U # _chem_comp.id O4U _chem_comp.name "~{N}-methyl-1-[4-[[[1-methyl-5-(phenylmethyl)pyrazol-3-yl]carbonylamino]methyl]phenyl]benzimidazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H26 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-23 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.545 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O4U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8I2N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O4U C7 C1 C 0 1 Y N N N N N 13.706 16.771 20.055 7.412 1.476 0.022 C7 O4U 1 O4U C6 C2 C 0 1 Y N N N N N 12.988 16.826 21.242 6.051 1.673 0.246 C6 O4U 2 O4U C1 C3 C 0 1 N N N N N N 13.915 16.340 17.599 9.335 -0.032 -0.423 C1 O4U 3 O4U C5 C4 C 0 1 Y N N N N N 11.648 16.478 21.247 5.184 0.564 0.267 C5 O4U 4 O4U C4 C5 C 0 1 Y N N N N N 11.021 16.091 20.067 5.684 -0.717 0.065 C4 O4U 5 O4U C3 C6 C 0 1 Y N N N N N 11.741 16.031 18.879 7.017 -0.906 -0.155 C3 O4U 6 O4U C2 C7 C 0 1 Y N N N N N 13.089 16.370 18.871 7.894 0.186 -0.184 C2 O4U 7 O4U C17 C8 C 0 1 Y N N N N N 12.282 17.079 23.312 4.047 2.425 0.623 C17 O4U 8 O4U C20 C9 C 0 1 N N N N N N 14.156 15.847 15.220 11.234 -1.497 -0.848 C20 O4U 9 O4U C27 C10 C 0 1 Y N N N N N 10.071 16.461 23.045 2.737 0.335 0.612 C27 O4U 10 O4U C28 C11 C 0 1 Y N N N N N 9.937 15.862 24.295 1.890 0.530 1.694 C28 O4U 11 O4U C29 C12 C 0 1 Y N N N N N 8.723 15.638 24.905 0.718 -0.195 1.792 C29 O4U 12 O4U C30 C13 C 0 1 Y N N N N N 7.557 16.020 24.270 0.389 -1.115 0.813 C30 O4U 13 O4U C31 C14 C 0 1 Y N N N N N 7.633 16.626 23.019 1.231 -1.312 -0.266 C31 O4U 14 O4U C32 C15 C 0 1 Y N N N N N 8.881 16.842 22.444 2.404 -0.590 -0.369 C32 O4U 15 O4U C33 C16 C 0 1 N N N N N N 6.216 15.759 24.925 -0.890 -1.904 0.923 C33 O4U 16 O4U C35 C17 C 0 1 N N N N N N 6.529 14.079 26.670 -3.216 -1.693 0.229 C35 O4U 17 O4U C37 C18 C 0 1 Y N N N N N 6.642 13.808 28.132 -4.308 -0.958 -0.442 C37 O4U 18 O4U C40 C19 C 0 1 Y N N N N N 6.780 12.762 30.135 -6.280 -0.387 -1.244 C40 O4U 19 O4U C41 C20 C 0 1 Y N N N N N 6.655 12.549 28.756 -5.656 -1.371 -0.554 C41 O4U 20 O4U C42 C21 C 0 1 N N N N N N 6.802 11.739 31.250 -7.736 -0.351 -1.630 C42 O4U 21 O4U C43 C22 C 0 1 Y N N N N N 6.519 10.349 30.739 -8.545 0.209 -0.489 C43 O4U 22 O4U C44 C23 C 0 1 Y N N N N N 5.262 9.770 30.934 -8.772 1.570 -0.405 C44 O4U 23 O4U C45 C24 C 0 1 Y N N N N N 4.998 8.473 30.467 -9.514 2.084 0.642 C45 O4U 24 O4U C46 C25 C 0 1 Y N N N N N 5.998 7.761 29.811 -10.029 1.236 1.606 C46 O4U 25 O4U C47 C26 C 0 1 Y N N N N N 7.249 8.345 29.610 -9.802 -0.125 1.522 C47 O4U 26 O4U C48 C27 C 0 1 Y N N N N N 7.509 9.639 30.069 -9.065 -0.639 0.471 C48 O4U 27 O4U C49 C28 C 0 1 N N N N N N 7.004 14.941 31.523 -5.615 1.796 -2.256 C49 O4U 28 O4U N14 N1 N 0 1 Y N N N N N 13.349 17.173 22.501 5.290 2.776 0.470 N14 O4U 29 O4U N16 N2 N 0 1 Y N N N N N 11.294 16.667 22.519 3.924 1.072 0.507 N16 O4U 30 O4U N18 N3 N 0 1 N N N N N N 13.359 15.980 16.432 9.805 -1.281 -0.612 N18 O4U 31 O4U N34 N4 N 0 1 N N N N N N 6.392 15.354 26.297 -1.973 -1.175 0.257 N34 O4U 32 O4U N38 N5 N 0 1 Y N N N N N 6.769 14.772 29.081 -4.212 0.210 -1.046 N38 O4U 33 O4U N39 N6 N 0 1 Y N N N N N 6.864 14.086 30.308 -5.354 0.556 -1.520 N39 O4U 34 O4U O19 O1 O 0 1 N N N N N N 15.095 16.697 17.657 10.097 0.915 -0.449 O19 O4U 35 O4U O36 O2 O 0 1 N N N N N N 6.593 13.153 25.864 -3.440 -2.766 0.756 O36 O4U 36 O4U H1 H1 H 0 1 N N N N N N 14.752 17.041 20.049 8.088 2.318 0.004 H1 O4U 37 O4U H2 H2 H 0 1 N N N N N N 9.971 15.836 20.074 5.015 -1.565 0.082 H2 O4U 38 O4U H3 H3 H 0 1 N N N N N N 11.255 15.722 17.966 7.399 -1.904 -0.311 H3 O4U 39 O4U H4 H4 H 0 1 N N N N N N 12.236 17.290 24.370 3.231 3.106 0.813 H4 O4U 40 O4U H5 H5 H 0 1 N N N N N N 13.507 15.545 14.385 11.804 -1.128 0.004 H5 O4U 41 O4U H6 H6 H 0 1 N N N N N N 14.630 16.811 14.986 11.424 -2.563 -0.977 H6 O4U 42 O4U H7 H7 H 0 1 N N N N N N 14.933 15.084 15.374 11.539 -0.963 -1.748 H7 O4U 43 O4U H8 H8 H 0 1 N N N N N N 10.834 15.557 24.814 2.147 1.248 2.459 H8 O4U 44 O4U H9 H9 H 0 1 N N N N N N 8.683 15.166 25.875 0.058 -0.043 2.633 H9 O4U 45 O4U H10 H10 H 0 1 N N N N N N 6.734 16.925 22.501 0.972 -2.032 -1.028 H10 O4U 46 O4U H11 H11 H 0 1 N N N N N N 8.925 17.331 21.482 3.061 -0.744 -1.212 H11 O4U 47 O4U H12 H12 H 0 1 N N N N N N 5.613 16.679 24.894 -0.760 -2.875 0.446 H12 O4U 48 O4U H13 H13 H 0 1 N N N N N N 5.695 14.961 24.376 -1.140 -2.046 1.974 H13 O4U 49 O4U H14 H14 H 0 1 N N N N N N 6.582 11.591 28.262 -6.096 -2.280 -0.171 H14 O4U 50 O4U H15 H15 H 0 1 N N N N N N 7.795 11.749 31.723 -7.863 0.280 -2.510 H15 O4U 51 O4U H16 H16 H 0 1 N N N N N N 6.038 12.007 31.995 -8.077 -1.361 -1.856 H16 O4U 52 O4U H17 H17 H 0 1 N N N N N N 4.489 10.324 31.447 -8.370 2.232 -1.157 H17 O4U 53 O4U H18 H18 H 0 1 N N N N N N 4.024 8.030 30.616 -9.691 3.147 0.708 H18 O4U 54 O4U H19 H19 H 0 1 N N N N N N 5.806 6.758 29.458 -10.608 1.638 2.424 H19 O4U 55 O4U H20 H20 H 0 1 N N N N N N 8.022 7.793 29.096 -10.204 -0.787 2.274 H20 O4U 56 O4U H21 H21 H 0 1 N N N N N N 8.478 10.087 29.904 -8.888 -1.702 0.405 H21 O4U 57 O4U H22 H22 H 0 1 N N N N N N 7.008 16.001 31.228 -5.901 2.580 -1.556 H22 O4U 58 O4U H23 H23 H 0 1 N N N N N N 6.160 14.753 32.203 -4.714 2.097 -2.791 H23 O4U 59 O4U H24 H24 H 0 1 N N N N N N 7.947 14.699 32.034 -6.423 1.632 -2.969 H24 O4U 60 O4U H25 H25 H 0 1 N N N N N N 12.376 15.799 16.394 9.197 -2.036 -0.591 H25 O4U 61 O4U H26 H26 H 0 1 N N N N N N 6.413 16.062 27.003 -1.794 -0.319 -0.163 H26 O4U 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O4U C20 N18 SING N N 1 O4U N18 C1 SING N N 2 O4U C1 O19 DOUB N N 3 O4U C1 C2 SING N N 4 O4U C2 C3 DOUB Y N 5 O4U C2 C7 SING Y N 6 O4U C3 C4 SING Y N 7 O4U C7 C6 DOUB Y N 8 O4U C4 C5 DOUB Y N 9 O4U C6 C5 SING Y N 10 O4U C6 N14 SING Y N 11 O4U C5 N16 SING Y N 12 O4U C32 C31 DOUB Y N 13 O4U C32 C27 SING Y N 14 O4U N14 C17 DOUB Y N 15 O4U N16 C27 SING N N 16 O4U N16 C17 SING Y N 17 O4U C31 C30 SING Y N 18 O4U C27 C28 DOUB Y N 19 O4U C30 C29 DOUB Y N 20 O4U C30 C33 SING N N 21 O4U C28 C29 SING Y N 22 O4U C33 N34 SING N N 23 O4U O36 C35 DOUB N N 24 O4U N34 C35 SING N N 25 O4U C35 C37 SING N N 26 O4U C37 C41 SING Y N 27 O4U C37 N38 DOUB Y N 28 O4U C41 C40 DOUB Y N 29 O4U N38 N39 SING Y N 30 O4U C47 C46 DOUB Y N 31 O4U C47 C48 SING Y N 32 O4U C46 C45 SING Y N 33 O4U C48 C43 DOUB Y N 34 O4U C40 N39 SING Y N 35 O4U C40 C42 SING N N 36 O4U N39 C49 SING N N 37 O4U C45 C44 DOUB Y N 38 O4U C43 C44 SING Y N 39 O4U C43 C42 SING N N 40 O4U C7 H1 SING N N 41 O4U C4 H2 SING N N 42 O4U C3 H3 SING N N 43 O4U C17 H4 SING N N 44 O4U C20 H5 SING N N 45 O4U C20 H6 SING N N 46 O4U C20 H7 SING N N 47 O4U C28 H8 SING N N 48 O4U C29 H9 SING N N 49 O4U C31 H10 SING N N 50 O4U C32 H11 SING N N 51 O4U C33 H12 SING N N 52 O4U C33 H13 SING N N 53 O4U C41 H14 SING N N 54 O4U C42 H15 SING N N 55 O4U C42 H16 SING N N 56 O4U C44 H17 SING N N 57 O4U C45 H18 SING N N 58 O4U C46 H19 SING N N 59 O4U C47 H20 SING N N 60 O4U C48 H21 SING N N 61 O4U C49 H22 SING N N 62 O4U C49 H23 SING N N 63 O4U C49 H24 SING N N 64 O4U N18 H25 SING N N 65 O4U N34 H26 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O4U InChI InChI 1.06 "InChI=1S/C28H26N6O2/c1-29-27(35)21-10-13-26-24(15-21)31-18-34(26)22-11-8-20(9-12-22)17-30-28(36)25-16-23(33(2)32-25)14-19-6-4-3-5-7-19/h3-13,15-16,18H,14,17H2,1-2H3,(H,29,35)(H,30,36)" O4U InChIKey InChI 1.06 OVVBAKUOCIBISQ-UHFFFAOYSA-N O4U SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1ccc2n(cnc2c1)c3ccc(CNC(=O)c4cc(Cc5ccccc5)n(C)n4)cc3" O4U SMILES CACTVS 3.385 "CNC(=O)c1ccc2n(cnc2c1)c3ccc(CNC(=O)c4cc(Cc5ccccc5)n(C)n4)cc3" O4U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccc2c(c1)ncn2c3ccc(cc3)CNC(=O)c4cc(n(n4)C)Cc5ccccc5" O4U SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccc2c(c1)ncn2c3ccc(cc3)CNC(=O)c4cc(n(n4)C)Cc5ccccc5" # _pdbx_chem_comp_identifier.comp_id O4U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-methyl-1-[4-[[[1-methyl-5-(phenylmethyl)pyrazol-3-yl]carbonylamino]methyl]phenyl]benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O4U "Create component" 2023-01-23 PDBJ O4U "Initial release" 2024-01-31 RCSB #