data_O56 # _chem_comp.id O56 _chem_comp.name "1-[4-[4-chloranyl-3-(trifluoromethyl)phenyl]-4-oxidanyl-piperidin-1-yl]-3-[2-(dimethylamino)ethyldisulfanyl]propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 Cl F3 N2 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.000 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O56 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A6F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O56 O2 O1 O 0 1 N N N N N N 19.850 23.273 2.308 2.286 1.263 1.829 O2 O56 1 O56 C3 C1 C 0 1 N N N N N N 20.468 23.821 1.418 1.977 0.691 0.805 C3 O56 2 O56 C2 C2 C 0 1 N N N N N N 20.182 25.262 1.061 2.932 -0.286 0.170 C2 O56 3 O56 C1 C3 C 0 1 N N N N N N 19.018 25.829 1.962 4.207 -0.373 1.011 C1 O56 4 O56 S S1 S 0 1 N N N N N N 19.604 25.740 3.694 5.357 -1.550 0.247 S O56 5 O56 N N1 N 0 1 N N N N N N 21.511 23.177 0.643 0.777 0.927 0.238 N O56 6 O56 C6 C4 C 0 1 N N N N N N 22.314 23.857 -0.470 0.387 0.238 -1.000 C6 O56 7 O56 C7 C5 C 0 1 N N N N N N 23.586 23.161 -0.968 -0.963 -0.450 -0.776 C7 O56 8 O56 C8 C6 C 0 1 N N N N N N 24.173 22.228 0.016 -1.981 0.580 -0.282 C8 O56 9 O56 O1 O2 O 0 1 N N N N N N 23.932 21.305 -1.052 -2.103 1.628 -1.245 O1 O56 10 O56 C5 C7 C 0 1 N N N N N N 23.331 21.414 0.940 -1.510 1.166 1.052 C5 O56 11 O56 C4 C8 C 0 1 N N N N N N 21.864 21.745 0.873 -0.167 1.873 0.848 C4 O56 12 O56 C9 C9 C 0 1 Y N N N N N 25.690 21.758 0.113 -3.319 -0.086 -0.092 C9 O56 13 O56 C15 C10 C 0 1 Y N N N N N 26.405 22.391 1.110 -3.382 -1.424 0.252 C15 O56 14 O56 C14 C11 C 0 1 Y N N N N N 27.718 22.062 1.341 -4.610 -2.036 0.425 C14 O56 15 O56 C13 C12 C 0 1 Y N N N N N 28.325 21.080 0.579 -5.775 -1.310 0.255 C13 O56 16 O56 CL CL1 CL 0 0 N N N N N N 30.023 20.688 0.914 -7.316 -2.078 0.473 CL O56 17 O56 C11 C13 C 0 1 Y N N N N N 27.622 20.413 -0.421 -5.711 0.029 -0.090 C11 O56 18 O56 C10 C14 C 0 1 Y N N N N N 26.289 20.748 -0.645 -4.483 0.641 -0.257 C10 O56 19 O56 C12 C15 C 0 1 N N N N N N 28.297 19.323 -1.248 -6.980 0.820 -0.276 C12 O56 20 O56 F1 F1 F 0 1 N N N N N N 29.542 19.730 -1.617 -7.742 0.245 -1.298 F1 O56 21 O56 F2 F2 F 0 1 N N N N N N 27.562 19.069 -2.379 -7.714 0.813 0.915 F2 O56 22 O56 F3 F3 F 0 1 N N N N N N 28.429 18.189 -0.490 -6.661 2.139 -0.619 F3 O56 23 O56 H1 H1 H 0 1 N N N N N N 21.090 25.862 1.221 2.464 -1.269 0.118 H1 O56 24 O56 H2 H2 H 0 1 N N N N N N 19.884 25.322 0.004 3.182 0.051 -0.835 H2 O56 25 O56 H3 H3 H 0 1 N N N N N N 18.800 26.872 1.688 4.675 0.610 1.064 H3 O56 26 O56 H4 H4 H 0 1 N N N N N N 18.111 25.220 1.837 3.957 -0.711 2.017 H4 O56 27 O56 H7 H6 H 0 1 N N N N N N 22.608 24.851 -0.101 0.297 0.963 -1.809 H7 O56 28 O56 H6 H7 H 0 1 N N N N N N 21.643 23.971 -1.335 1.140 -0.506 -1.258 H6 O56 29 O56 H9 H8 H 0 1 N N N N N N 23.339 22.596 -1.879 -1.311 -0.884 -1.713 H9 O56 30 O56 H8 H9 H 0 1 N N N N N N 24.334 23.932 -1.206 -0.851 -1.237 -0.030 H8 O56 31 O56 H10 H10 H 0 1 N N N N N N 24.215 20.437 -0.791 -2.734 2.319 -0.997 H10 O56 32 O56 H11 H11 H 0 1 N N N N N N 23.459 20.352 0.682 -2.247 1.883 1.414 H11 O56 33 O56 H12 H12 H 0 1 N N N N N N 23.679 21.586 1.969 -1.393 0.364 1.780 H12 O56 34 O56 H13 H13 H 0 1 N N N N N N 21.409 21.438 1.826 0.219 2.202 1.813 H13 O56 35 O56 H14 H14 H 0 1 N N N N N N 21.427 21.158 0.052 -0.297 2.733 0.192 H14 O56 36 O56 H15 H15 H 0 1 N N N N N N 25.928 23.150 1.712 -2.473 -1.990 0.385 H15 O56 37 O56 H16 H16 H 0 1 N N N N N N 28.275 22.568 2.115 -4.659 -3.081 0.694 H16 O56 38 O56 H17 H17 H 0 1 N N N N N N 25.720 20.229 -1.402 -4.433 1.686 -0.526 H17 O56 39 O56 S1 S2 S 0 1 N Y N N N N ? ? ? 5.956 -0.572 -1.452 S1 O56 40 O56 C17 C17 C 0 1 N Y N N N N ? ? ? 7.320 0.469 -0.865 C17 O56 41 O56 C18 C18 C 0 1 N Y N N N N ? ? ? 8.518 -0.414 -0.509 C18 O56 42 O56 N1 N2 N 0 1 N Y N N N N ? ? ? 9.623 0.429 -0.033 N1 O56 43 O56 C19 C19 C 0 1 N Y N N N N ? ? ? 9.279 1.080 1.238 C19 O56 44 O56 C20 C20 C 0 1 N Y N N N N ? ? ? 10.863 -0.349 0.093 C20 O56 45 O56 H5 H5 H 0 1 N Y N N N N ? ? ? 7.606 1.170 -1.649 H5 O56 46 O56 H18 H18 H 0 1 N Y N N N N ? ? ? 7.001 1.021 0.019 H18 O56 47 O56 H19 H19 H 0 1 N Y N N N N ? ? ? 8.233 -1.115 0.275 H19 O56 48 O56 H20 H20 H 0 1 N Y N N N N ? ? ? 8.837 -0.967 -1.392 H20 O56 49 O56 H21 H21 H 0 1 N Y N N N N ? ? ? 9.070 0.320 1.991 H21 O56 50 O56 H22 H22 H 0 1 N Y N N N N ? ? ? 10.114 1.698 1.568 H22 O56 51 O56 H23 H23 H 0 1 N Y N N N N ? ? ? 8.397 1.706 1.099 H23 O56 52 O56 H24 H24 H 0 1 N Y N N N N ? ? ? 11.132 -0.763 -0.878 H24 O56 53 O56 H25 H25 H 0 1 N Y N N N N ? ? ? 11.664 0.299 0.447 H25 O56 54 O56 H26 H26 H 0 1 N Y N N N N ? ? ? 10.711 -1.161 0.804 H26 O56 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O56 F2 C12 SING N N 1 O56 F1 C12 SING N N 2 O56 C12 F3 SING N N 3 O56 C12 C11 SING N N 4 O56 O1 C8 SING N N 5 O56 C7 C6 SING N N 6 O56 C7 C8 SING N N 7 O56 C10 C11 DOUB Y N 8 O56 C10 C9 SING Y N 9 O56 C6 N SING N N 10 O56 C11 C13 SING Y N 11 O56 C8 C9 SING N N 12 O56 C8 C5 SING N N 13 O56 C9 C15 DOUB Y N 14 O56 C13 CL SING N N 15 O56 C13 C14 DOUB Y N 16 O56 N C4 SING N N 17 O56 N C3 SING N N 18 O56 C4 C5 SING N N 19 O56 C2 C3 SING N N 20 O56 C2 C1 SING N N 21 O56 C15 C14 SING Y N 22 O56 C3 O2 DOUB N N 23 O56 C1 S SING N N 24 O56 C2 H1 SING N N 25 O56 C2 H2 SING N N 26 O56 C1 H3 SING N N 27 O56 C1 H4 SING N N 28 O56 C6 H7 SING N N 29 O56 C6 H6 SING N N 30 O56 C7 H9 SING N N 31 O56 C7 H8 SING N N 32 O56 O1 H10 SING N N 33 O56 C5 H11 SING N N 34 O56 C5 H12 SING N N 35 O56 C4 H13 SING N N 36 O56 C4 H14 SING N N 37 O56 C15 H15 SING N N 38 O56 C14 H16 SING N N 39 O56 C10 H17 SING N N 40 O56 S S1 SING N N 41 O56 S1 C17 SING N N 42 O56 C17 C18 SING N N 43 O56 C18 N1 SING N N 44 O56 N1 C19 SING N N 45 O56 N1 C20 SING N N 46 O56 C17 H5 SING N N 47 O56 C17 H18 SING N N 48 O56 C18 H19 SING N N 49 O56 C18 H20 SING N N 50 O56 C19 H21 SING N N 51 O56 C19 H22 SING N N 52 O56 C19 H23 SING N N 53 O56 C20 H24 SING N N 54 O56 C20 H25 SING N N 55 O56 C20 H26 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O56 InChI InChI 1.06 "InChI=1S/C19H26ClF3N2O2S2/c1-24(2)10-12-29-28-11-5-17(26)25-8-6-18(27,7-9-25)14-3-4-16(20)15(13-14)19(21,22)23/h3-4,13,27H,5-12H2,1-2H3" O56 InChIKey InChI 1.06 SSTMQKOHFHMVOP-UHFFFAOYSA-N O56 SMILES_CANONICAL CACTVS 3.385 "CN(C)CCSSCCC(=O)N1CCC(O)(CC1)c2ccc(Cl)c(c2)C(F)(F)F" O56 SMILES CACTVS 3.385 "CN(C)CCSSCCC(=O)N1CCC(O)(CC1)c2ccc(Cl)c(c2)C(F)(F)F" O56 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN(C)CCSSCCC(=O)N1CCC(CC1)(c2ccc(c(c2)C(F)(F)F)Cl)O" O56 SMILES "OpenEye OEToolkits" 3.1.0.0 "CN(C)CCSSCCC(=O)N1CCC(CC1)(c2ccc(c(c2)C(F)(F)F)Cl)O" # _pdbx_chem_comp_identifier.comp_id O56 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "1-[4-[4-chloranyl-3-(trifluoromethyl)phenyl]-4-oxidanyl-piperidin-1-yl]-3-[2-(dimethylamino)ethyldisulfanyl]propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O56 "Create component" 2022-08-30 PDBE O56 "Initial release" 2023-04-26 RCSB O56 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id O56 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom S _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #