data_O5F # _chem_comp.id O5F _chem_comp.name "(2P)-2-(isoquinolin-4-yl)-1-[4-(methylamino)-4-oxobutyl]-N-[(1S)-1-(naphthalen-2-yl)ethyl]-1H-benzimidazole-7-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H31 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-22 _chem_comp.pdbx_modified_date 2023-07-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.642 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O5F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UR9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O5F N1 N1 N 0 1 Y N N 21.440 -4.824 25.376 -1.578 0.857 0.089 N1 O5F 1 O5F C7 C1 C 0 1 Y N N 22.543 -3.126 33.203 8.901 0.196 2.242 C7 O5F 2 O5F C8 C2 C 0 1 Y N N 22.599 -2.093 32.278 8.310 -1.028 2.551 C8 O5F 3 O5F N2 N2 N 0 1 N N N 19.960 -6.828 29.646 -1.542 -5.240 -0.871 N2 O5F 4 O5F C9 C3 C 0 1 Y N N 23.284 -2.244 31.107 7.137 -1.405 1.973 C9 O5F 5 O5F O1 O1 O 0 1 N N N 24.155 -6.128 26.654 0.728 -0.534 -1.254 O1 O5F 6 O5F C1 C4 C 0 1 N N S 26.195 -4.964 28.112 3.419 -0.436 -1.113 C1 O5F 7 O5F C5 C5 C 0 1 Y N N 23.874 -4.527 31.742 7.108 0.697 0.741 C5 O5F 8 O5F C6 C6 C 0 1 Y N N 23.157 -4.322 32.950 8.319 1.052 1.358 C6 O5F 9 O5F N3 N3 N 0 1 Y N N 16.773 -3.842 25.100 -4.371 -0.423 3.247 N3 O5F 10 O5F C4 C7 C 0 1 Y N N 24.513 -5.749 31.418 6.477 1.554 -0.176 C4 O5F 11 O5F C3 C8 C 0 1 Y N N 25.217 -5.884 30.255 5.304 1.177 -0.754 C3 O5F 12 O5F C2 C9 C 0 1 Y N N 25.336 -4.828 29.354 4.719 -0.052 -0.453 C2 O5F 13 O5F N4 N4 N 0 1 Y N N 20.809 -3.976 23.388 -2.853 2.636 -0.056 N4 O5F 14 O5F N N5 N 0 1 N N N 25.535 -4.374 26.942 2.547 0.738 -1.195 N O5F 15 O5F C C10 C 0 1 N N N 27.571 -4.329 28.290 3.698 -0.964 -2.522 C O5F 16 O5F O O2 O 0 1 N N N 18.900 -4.967 28.997 -2.584 -3.580 -1.909 O O5F 17 O5F C10 C11 C 0 1 Y N N 23.954 -3.460 30.812 6.510 -0.551 1.051 C10 O5F 18 O5F C11 C12 C 0 1 Y N N 24.702 -3.646 29.627 5.298 -0.906 0.434 C11 O5F 19 O5F C12 C13 C 0 1 N N N 24.560 -5.024 26.288 1.210 0.582 -1.262 C12 O5F 20 O5F C13 C14 C 0 1 Y N N 23.989 -4.356 25.068 0.332 1.765 -1.344 C13 O5F 21 O5F C14 C15 C 0 1 Y N N 24.875 -3.719 24.196 0.730 2.884 -2.075 C14 O5F 22 O5F C15 C16 C 0 1 Y N N 24.433 -3.175 22.996 -0.093 3.994 -2.153 C15 O5F 23 O5F C16 C17 C 0 1 Y N N 23.096 -3.257 22.633 -1.314 4.012 -1.515 C16 O5F 24 O5F C17 C18 C 0 1 Y N N 22.195 -3.868 23.506 -1.736 2.902 -0.776 C17 O5F 25 O5F C18 C19 C 0 1 Y N N 22.628 -4.403 24.722 -0.907 1.770 -0.690 C18 O5F 26 O5F C19 C20 C 0 1 N N N 21.296 -5.341 26.739 -1.108 -0.480 0.461 C19 O5F 27 O5F C20 C21 C 0 1 N N N 21.527 -4.281 27.803 -1.721 -1.516 -0.483 C20 O5F 28 O5F C21 C22 C 0 1 N N N 21.282 -4.859 29.193 -1.230 -2.913 -0.095 C21 O5F 29 O5F C22 C23 C 0 1 N N N 19.942 -5.552 29.276 -1.834 -3.934 -1.024 C22 O5F 30 O5F C23 C24 C 0 1 N N N 18.760 -7.647 29.668 -2.129 -6.233 -1.775 C23 O5F 31 O5F C24 C25 C 0 1 Y N N 20.409 -4.543 24.510 -2.766 1.433 0.459 C24 O5F 32 O5F C25 C26 C 0 1 Y N N 18.984 -4.792 24.816 -3.793 0.793 1.304 C25 O5F 33 O5F C26 C27 C 0 1 Y N N 18.473 -6.113 25.021 -5.205 0.813 0.924 C26 O5F 34 O5F C27 C28 C 0 1 Y N N 19.269 -7.291 25.036 -5.658 1.429 -0.245 C27 O5F 35 O5F C28 C29 C 0 1 Y N N 18.709 -8.518 25.255 -6.990 1.411 -0.541 C28 O5F 36 O5F C29 C30 C 0 1 Y N N 17.340 -8.646 25.462 -7.903 0.787 0.306 C29 O5F 37 O5F C30 C31 C 0 1 Y N N 16.532 -7.545 25.462 -7.495 0.176 1.454 C30 O5F 38 O5F C31 C32 C 0 1 Y N N 17.073 -6.252 25.247 -6.132 0.176 1.789 C31 O5F 39 O5F C32 C33 C 0 1 Y N N 16.287 -5.070 25.267 -5.650 -0.437 2.957 C32 O5F 40 O5F C33 C34 C 0 1 Y N N 18.090 -3.722 24.882 -3.453 0.152 2.487 C33 O5F 41 O5F H1 H1 H 0 1 N N N 22.010 -2.984 34.131 9.832 0.471 2.715 H1 O5F 42 O5F H2 H2 H 0 1 N N N 22.096 -1.161 32.487 8.790 -1.687 3.259 H2 O5F 43 O5F H3 H3 H 0 1 N N N 20.830 -7.239 29.919 -0.942 -5.524 -0.163 H3 O5F 44 O5F H4 H4 H 0 1 N N N 23.316 -1.430 30.398 6.691 -2.357 2.221 H4 O5F 45 O5F H5 H5 H 0 1 N N N 26.344 -6.037 27.922 2.929 -1.212 -0.525 H5 O5F 46 O5F H6 H6 H 0 1 N N N 23.096 -5.119 33.677 8.786 1.999 1.132 H6 O5F 47 O5F H7 H7 H 0 1 N N N 24.443 -6.584 32.099 6.920 2.508 -0.422 H7 O5F 48 O5F H8 H8 H 0 1 N N N 25.691 -6.828 30.030 4.821 1.837 -1.459 H8 O5F 49 O5F H9 H9 H 0 1 N N N 25.818 -3.469 26.625 2.932 1.629 -1.201 H9 O5F 50 O5F H10 H10 H 0 1 N N N 28.068 -4.770 29.167 4.347 -1.837 -2.461 H10 O5F 51 O5F H11 H11 H 0 1 N N N 28.179 -4.514 27.392 2.759 -1.241 -2.999 H11 O5F 52 O5F H12 H12 H 0 1 N N N 27.458 -3.245 28.439 4.189 -0.188 -3.109 H12 O5F 53 O5F H13 H13 H 0 1 N N N 24.775 -2.834 28.918 4.828 -1.851 0.664 H13 O5F 54 O5F H14 H14 H 0 1 N N N 25.920 -3.648 24.459 1.684 2.885 -2.580 H14 O5F 55 O5F H15 H15 H 0 1 N N N 25.136 -2.684 22.340 0.226 4.855 -2.721 H15 O5F 56 O5F H16 H16 H 0 1 N N N 22.758 -2.854 21.690 -1.945 4.886 -1.585 H16 O5F 57 O5F H17 H17 H 0 1 N N N 20.278 -5.740 26.857 -0.021 -0.517 0.384 H17 O5F 58 O5F H18 H18 H 0 1 N N N 22.026 -6.150 26.886 -1.408 -0.699 1.485 H18 O5F 59 O5F H19 H19 H 0 1 N N N 22.565 -3.922 27.738 -2.808 -1.479 -0.406 H19 O5F 60 O5F H20 H20 H 0 1 N N N 20.837 -3.441 27.633 -1.421 -1.298 -1.508 H20 O5F 61 O5F H21 H21 H 0 1 N N N 22.075 -5.586 29.423 -0.144 -2.950 -0.171 H21 O5F 62 O5F H22 H22 H 0 1 N N N 21.308 -4.042 29.929 -1.530 -3.132 0.930 H22 O5F 63 O5F H23 H23 H 0 1 N N N 19.015 -8.663 30.005 -3.216 -6.196 -1.698 H23 O5F 64 O5F H24 H24 H 0 1 N N N 18.027 -7.205 30.358 -1.829 -6.014 -2.799 H24 O5F 65 O5F H25 H25 H 0 1 N N N 18.330 -7.694 28.657 -1.779 -7.228 -1.498 H25 O5F 66 O5F H26 H26 H 0 1 N N N 20.334 -7.215 24.872 -4.959 1.917 -0.909 H26 O5F 67 O5F H27 H27 H 0 1 N N N 19.336 -9.397 25.267 -7.341 1.887 -1.444 H27 O5F 68 O5F H28 H28 H 0 1 N N N 16.912 -9.624 25.624 -8.952 0.787 0.049 H28 O5F 69 O5F H29 H29 H 0 1 N N N 15.471 -7.660 25.627 -8.214 -0.303 2.101 H29 O5F 70 O5F H30 H30 H 0 1 N N N 15.224 -5.174 25.428 -6.342 -0.926 3.626 H30 O5F 71 O5F H31 H31 H 0 1 N N N 18.488 -2.727 24.748 -2.418 0.121 2.793 H31 O5F 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O5F C16 C15 DOUB Y N 1 O5F C16 C17 SING Y N 2 O5F C15 C14 SING Y N 3 O5F N4 C17 SING Y N 4 O5F N4 C24 DOUB Y N 5 O5F C17 C18 DOUB Y N 6 O5F C14 C13 DOUB Y N 7 O5F C24 C25 SING N N 8 O5F C24 N1 SING Y N 9 O5F C18 C13 SING Y N 10 O5F C18 N1 SING Y N 11 O5F C25 C33 DOUB Y N 12 O5F C25 C26 SING Y N 13 O5F C33 N3 SING Y N 14 O5F C26 C27 DOUB Y N 15 O5F C26 C31 SING Y N 16 O5F C27 C28 SING Y N 17 O5F C13 C12 SING N N 18 O5F N3 C32 DOUB Y N 19 O5F C31 C32 SING Y N 20 O5F C31 C30 DOUB Y N 21 O5F C28 C29 DOUB Y N 22 O5F N1 C19 SING N N 23 O5F C30 C29 SING Y N 24 O5F C12 O1 DOUB N N 25 O5F C12 N SING N N 26 O5F C19 C20 SING N N 27 O5F N C1 SING N N 28 O5F C20 C21 SING N N 29 O5F C1 C SING N N 30 O5F C1 C2 SING N N 31 O5F O C22 DOUB N N 32 O5F C21 C22 SING N N 33 O5F C22 N2 SING N N 34 O5F C2 C11 DOUB Y N 35 O5F C2 C3 SING Y N 36 O5F C11 C10 SING Y N 37 O5F N2 C23 SING N N 38 O5F C3 C4 DOUB Y N 39 O5F C10 C9 DOUB Y N 40 O5F C10 C5 SING Y N 41 O5F C9 C8 SING Y N 42 O5F C4 C5 SING Y N 43 O5F C5 C6 DOUB Y N 44 O5F C8 C7 DOUB Y N 45 O5F C6 C7 SING Y N 46 O5F C7 H1 SING N N 47 O5F C8 H2 SING N N 48 O5F N2 H3 SING N N 49 O5F C9 H4 SING N N 50 O5F C1 H5 SING N N 51 O5F C6 H6 SING N N 52 O5F C4 H7 SING N N 53 O5F C3 H8 SING N N 54 O5F N H9 SING N N 55 O5F C H10 SING N N 56 O5F C H11 SING N N 57 O5F C H12 SING N N 58 O5F C11 H13 SING N N 59 O5F C14 H14 SING N N 60 O5F C15 H15 SING N N 61 O5F C16 H16 SING N N 62 O5F C19 H17 SING N N 63 O5F C19 H18 SING N N 64 O5F C20 H19 SING N N 65 O5F C20 H20 SING N N 66 O5F C21 H21 SING N N 67 O5F C21 H22 SING N N 68 O5F C23 H23 SING N N 69 O5F C23 H24 SING N N 70 O5F C23 H25 SING N N 71 O5F C27 H26 SING N N 72 O5F C28 H27 SING N N 73 O5F C29 H28 SING N N 74 O5F C30 H29 SING N N 75 O5F C32 H30 SING N N 76 O5F C33 H31 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O5F SMILES ACDLabs 12.01 "CC(NC(=O)c1cccc2nc(c3cncc4ccccc43)n(CCCC(=O)NC)c12)c1cc2ccccc2cc1" O5F InChI InChI 1.03 "InChI=1S/C34H31N5O2/c1-22(24-17-16-23-9-3-4-10-25(23)19-24)37-34(41)28-13-7-14-30-32(28)39(18-8-15-31(40)35-2)33(38-30)29-21-36-20-26-11-5-6-12-27(26)29/h3-7,9-14,16-17,19-22H,8,15,18H2,1-2H3,(H,35,40)(H,37,41)/t22-/m0/s1" O5F InChIKey InChI 1.03 CTPLSMAVLSTZPJ-QFIPXVFZSA-N O5F SMILES_CANONICAL CACTVS 3.385 "CNC(=O)CCCn1c(nc2cccc(C(=O)N[C@@H](C)c3ccc4ccccc4c3)c12)c5cncc6ccccc56" O5F SMILES CACTVS 3.385 "CNC(=O)CCCn1c(nc2cccc(C(=O)N[CH](C)c3ccc4ccccc4c3)c12)c5cncc6ccccc56" O5F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccc2ccccc2c1)NC(=O)c3cccc4c3n(c(n4)c5cncc6c5cccc6)CCCC(=O)NC" O5F SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccc2ccccc2c1)NC(=O)c3cccc4c3n(c(n4)c5cncc6c5cccc6)CCCC(=O)NC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier O5F "SYSTEMATIC NAME" ACDLabs 12.01 "(2P)-2-(isoquinolin-4-yl)-1-[4-(methylamino)-4-oxobutyl]-N-[(1S)-1-(naphthalen-2-yl)ethyl]-1H-benzimidazole-7-carboxamide" O5F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-isoquinolin-4-yl-3-[4-(methylamino)-4-oxidanylidene-butyl]-~{N}-[(1~{S})-1-naphthalen-2-ylethyl]benzimidazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O5F "Create component" 2022-04-22 RCSB O5F "Initial release" 2023-07-26 RCSB #