data_O5R # _chem_comp.id O5R _chem_comp.name "(2~{R},3~{S},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-methyl-6-octoxy-3-oxidanyl-oxan-4-yl]oxy-6-methyl-oxane-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H48 O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-21 _chem_comp.pdbx_modified_date 2024-08-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 584.651 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O5R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q8I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O5R CAY C1 C 0 1 N N R N N N 8.312 -11.112 5.559 4.492 -2.563 0.069 CAY O5R 1 O5R OAX O1 O 0 1 N N N N N N 7.198 -10.887 4.674 3.470 -2.393 1.053 OAX O5R 2 O5R CAW C2 C 0 1 N N R N N N 7.253 -11.646 3.482 3.202 -1.030 1.386 CAW O5R 3 O5R CAU C3 C 0 1 N N R N N N 6.087 -13.666 4.147 1.517 -0.691 -0.285 CAU O5R 4 O5R CAS C4 C 0 1 N N R N N N 6.399 -14.649 5.263 1.664 -1.844 -1.283 CAS O5R 5 O5R CAR C5 C 0 1 N N N N N N 5.442 -16.583 6.588 0.436 -3.294 -2.907 CAR O5R 6 O5R CAN C6 C 0 1 N N R N N N 4.356 -15.257 3.340 -0.468 0.075 -1.589 CAN O5R 7 O5R C1 C7 C 0 1 N N R N N N 5.867 -13.629 0.691 0.725 2.869 -0.631 C1 O5R 8 O5R C2 C8 C 0 1 N N R N N N 5.500 -12.455 -0.209 0.739 3.917 0.486 C2 O5R 9 O5R C3 C9 C 0 1 N N S N N N 4.039 -12.534 -0.629 -0.563 3.817 1.286 C3 O5R 10 O5R C4 C10 C 0 1 N N R N N N 3.727 -13.901 -1.217 -1.750 3.998 0.333 C4 O5R 11 O5R C5 C11 C 0 1 N N R N N N 4.121 -14.983 -0.217 -1.668 2.947 -0.777 C5 O5R 12 O5R C6 C12 C 0 1 N N N N N N 3.902 -16.384 -0.738 -2.816 3.159 -1.766 C6 O5R 13 O5R CAM C13 C 0 1 N N S N N N 5.565 -14.424 2.940 0.876 0.505 -0.995 CAM O5R 14 O5R CAQ C14 C 0 1 N N S N N N 5.171 -15.493 5.580 0.289 -2.183 -1.865 CAQ O5R 15 O5R CAZ C15 C 0 1 N N N N N N 8.035 -10.307 6.804 4.672 -4.054 -0.227 CAZ O5R 16 O5R CBA C16 C 0 1 N N S N N N 9.609 -10.720 4.863 5.808 -1.985 0.596 CBA O5R 17 O5R CBC C17 C 0 1 N N S N N N 9.738 -11.475 3.548 5.603 -0.508 0.947 CBC O5R 18 O5R CBE C18 C 0 1 N N S N N N 8.498 -11.280 2.686 4.465 -0.390 1.966 CBE O5R 19 O5R CBG C19 C 0 1 N N N N N N 2.044 -14.812 3.488 -2.671 -0.642 -0.973 CBG O5R 20 O5R CBH C20 C 0 1 N N N N N N 1.184 -14.701 4.729 -3.520 -1.057 0.231 CBH O5R 21 O5R CBI C21 C 0 1 N N N N N N 0.917 -13.264 5.162 -4.937 -1.395 -0.237 CBI O5R 22 O5R CBJ C22 C 0 1 N N N N N N 0.912 -13.063 6.672 -5.786 -1.809 0.967 CBJ O5R 23 O5R CBK C23 C 0 1 N N N N N N 2.299 -12.911 7.275 -7.203 -2.147 0.499 CBK O5R 24 O5R CBL C24 C 0 1 N N N N N N 2.335 -12.951 8.794 -8.052 -2.562 1.703 CBL O5R 25 O5R CBM C25 C 0 1 N N N N N N 1.741 -11.728 9.467 -9.469 -2.900 1.235 CBM O5R 26 O5R CBN C26 C 0 1 N N N N N N 1.675 -11.858 10.972 -10.318 -3.315 2.439 CBN O5R 27 O5R O2 O2 O 0 1 N N N N N N 5.736 -11.232 0.479 1.850 3.678 1.351 O2 O5R 28 O5R O3 O3 O 0 1 N N N N N N 3.755 -11.519 -1.584 -0.590 4.838 2.285 O3 O5R 29 O5R O4 O4 O 0 1 N N N N N N 4.449 -14.088 -2.429 -1.705 5.305 -0.242 O4 O5R 30 O5R O5 O5 O 0 1 N N N N N N 5.520 -14.863 0.085 -0.420 3.075 -1.461 O5 O5R 31 O5R O6 O6 O 0 1 N N N N N N 3.861 -17.335 0.320 -2.809 2.110 -2.736 O6 O5R 32 O5R OAL O7 O 0 1 N N N N N N 5.190 -13.493 1.916 0.668 1.562 -0.056 OAL O5R 33 O5R OAO O8 O 0 1 N N N N N N 3.366 -14.388 3.796 -1.347 -0.326 -0.536 OAO O5R 34 O5R OAP O9 O 0 1 N N N N N N 4.712 -16.149 4.380 -0.264 -1.020 -2.484 OAP O5R 35 O5R OAT O10 O 0 1 N N N N N N 7.478 -15.494 4.879 2.546 -1.454 -2.337 OAT O5R 36 O5R OAV O11 O 0 1 N N N N N N 7.313 -13.018 3.780 2.805 -0.321 0.210 OAV O5R 37 O5R OBB O12 O 0 1 N N N N N N 10.720 -11.024 5.700 6.817 -2.102 -0.409 OBB O5R 38 O5R OBD O13 O 0 1 N N N N N N 10.886 -11.019 2.843 6.806 0.022 1.506 OBD O5R 39 O5R OBF O14 O 0 1 N N N N N N 8.414 -9.928 2.252 4.832 -1.064 3.171 OBF O5R 40 O5R HAY H1 H 0 1 N N N N N N 8.365 -12.177 5.828 4.206 -2.043 -0.845 HAY O5R 41 O5R HAW H2 H 0 1 N N N N N N 6.369 -11.434 2.862 2.401 -0.987 2.124 HAW O5R 42 O5R HAU H3 H 0 1 N N N N N N 5.337 -12.937 4.487 0.884 -1.005 0.544 HAU O5R 43 O5R HAS H4 H 0 1 N N N N N N 6.673 -14.080 6.164 2.069 -2.718 -0.773 HAS O5R 44 O5R H63 H5 H 0 1 N N N N N N 5.797 -16.134 7.528 0.859 -4.181 -2.436 H63 O5R 45 O5R H64 H6 H 0 1 N N N N N N 4.516 -17.146 6.777 -0.543 -3.535 -3.322 H64 O5R 46 O5R HAR H7 H 0 1 N N N N N N 6.211 -17.264 6.194 1.096 -2.957 -3.707 HAR O5R 47 O5R HAN H8 H 0 1 N N N N N N 4.005 -15.817 2.461 -0.910 0.911 -2.132 HAN O5R 48 O5R H1 H9 H 0 1 N N N N N N 6.953 -13.599 0.864 1.630 2.964 -1.230 H1 O5R 49 O5R H21 H10 H 0 1 N N N N N N 6.125 -12.501 -1.113 0.825 4.912 0.050 H21 O5R 50 O5R H31 H11 H 0 1 N N N N N N 3.413 -12.389 0.264 -0.625 2.839 1.762 H31 O5R 51 O5R H41 H12 H 0 1 N N N N N N 2.645 -13.969 -1.405 -2.682 3.874 0.885 H41 O5R 52 O5R H5 H13 H 0 1 N N N N N N 3.528 -14.848 0.700 -1.743 1.951 -0.341 H5 O5R 53 O5R H61 H14 H 0 1 N N N N N N 2.948 -16.417 -1.285 -3.764 3.151 -1.229 H61 O5R 54 O5R H62 H15 H 0 1 N N N N N N 4.725 -16.644 -1.420 -2.691 4.119 -2.267 H62 O5R 55 O5R HAM H16 H 0 1 N N N N N N 6.354 -15.095 2.571 1.533 0.850 -1.793 HAM O5R 56 O5R HAQ H17 H 0 1 N N N N N N 4.381 -14.835 5.971 -0.371 -2.520 -1.066 HAQ O5R 57 O5R HAZ H18 H 0 1 N N N N N N 8.859 -10.442 7.520 3.735 -4.466 -0.602 HAZ O5R 58 O5R H65 H19 H 0 1 N N N N N N 7.949 -9.242 6.541 5.452 -4.183 -0.978 H65 O5R 59 O5R H66 H20 H 0 1 N N N N N N 7.094 -10.649 7.260 4.958 -4.574 0.687 H66 O5R 60 O5R HBA H21 H 0 1 N N N N N N 9.582 -9.641 4.649 6.115 -2.533 1.487 HBA O5R 61 O5R HBC H22 H 0 1 N N N N N N 9.840 -12.547 3.771 5.344 0.048 0.046 HBC O5R 62 O5R HBE H23 H 0 1 N N N N N N 8.567 -11.950 1.816 4.276 0.662 2.180 HBE O5R 63 O5R H67 H24 H 0 1 N N N N N N 1.629 -14.174 2.694 -2.631 -1.462 -1.689 H67 O5R 64 O5R HBG H25 H 0 1 N N N N N N 2.063 -15.857 3.146 -3.116 0.233 -1.446 HBG O5R 65 O5R H68 H26 H 0 1 N N N N N N 0.219 -15.188 4.527 -3.075 -1.932 0.704 H68 O5R 66 O5R HBH H27 H 0 1 N N N N N N 1.693 -15.223 5.552 -3.559 -0.237 0.947 HBH O5R 67 O5R H69 H28 H 0 1 N N N N N N 1.699 -12.622 4.730 -5.381 -0.519 -0.710 H69 O5R 68 O5R HBI H29 H 0 1 N N N N N N -0.065 -12.961 4.769 -4.897 -2.215 -0.953 HBI O5R 69 O5R HBJ H30 H 0 1 N N N N N N 0.334 -12.155 6.899 -5.341 -2.685 1.440 HBJ O5R 70 O5R H7A H31 H 0 1 N N N N N N 0.425 -13.934 7.136 -5.825 -0.989 1.684 H7A O5R 71 O5R H7B H32 H 0 1 N N N N N N 2.930 -13.728 6.895 -7.647 -1.272 0.025 H7B O5R 72 O5R HBK H33 H 0 1 N N N N N N 2.712 -11.946 6.947 -7.163 -2.967 -0.218 HBK O5R 73 O5R H7C H34 H 0 1 N N N N N N 1.772 -13.835 9.128 -7.607 -3.437 2.176 H7C O5R 74 O5R HBL H35 H 0 1 N N N N N N 3.384 -13.043 9.111 -8.091 -1.742 2.419 HBL O5R 75 O5R H7D H36 H 0 1 N N N N N N 2.361 -10.854 9.217 -9.913 -2.025 0.761 H7D O5R 76 O5R HBM H37 H 0 1 N N N N N N 0.721 -11.576 9.083 -9.429 -3.720 0.518 HBM O5R 77 O5R H7E H38 H 0 1 N N N N N N 1.237 -10.944 11.401 -9.873 -4.190 2.912 H7E O5R 78 O5R H7F H39 H 0 1 N N N N N N 1.050 -12.723 11.238 -10.357 -2.495 3.155 H7F O5R 79 O5R HBN H40 H 0 1 N N N N N N 2.689 -12.001 11.372 -11.327 -3.555 2.105 HBN O5R 80 O5R H22 H41 H 0 1 N N N N N N 6.648 -11.186 0.740 2.710 3.720 0.909 H22 O5R 81 O5R H32 H42 H 0 1 N N N N N N 3.952 -10.668 -1.210 0.138 4.787 2.919 H32 O5R 82 O5R H42 H43 H 0 1 N N N N N N 4.248 -14.944 -2.789 -1.748 6.022 0.406 H42 O5R 83 O5R H7G H44 H 0 1 N N N N N N 3.722 -18.203 -0.039 -3.511 2.180 -3.397 H7G O5R 84 O5R HAT H45 H 0 1 N N N N N N 7.667 -16.105 5.581 2.685 -2.138 -3.007 HAT O5R 85 O5R HBB H46 H 0 1 N N N N N N 10.638 -10.552 6.520 6.996 -3.012 -0.683 HBB O5R 86 O5R HBD H47 H 0 1 N N N N N N 11.659 -11.141 3.382 6.748 0.955 1.752 HBD O5R 87 O5R HBF H48 H 0 1 N N N N N N 9.193 -9.705 1.756 4.155 -1.034 3.861 HBF O5R 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O5R O4 C4 SING N N 1 O5R O3 C3 SING N N 2 O5R C4 C3 SING N N 3 O5R C4 C5 SING N N 4 O5R C6 C5 SING N N 5 O5R C6 O6 SING N N 6 O5R C3 C2 SING N N 7 O5R C5 O5 SING N N 8 O5R C2 O2 SING N N 9 O5R C2 C1 SING N N 10 O5R O5 C1 SING N N 11 O5R C1 OAL SING N N 12 O5R OAL CAM SING N N 13 O5R OBF CBE SING N N 14 O5R CBE CAW SING N N 15 O5R CBE CBC SING N N 16 O5R OBD CBC SING N N 17 O5R CAM CAN SING N N 18 O5R CAM CAU SING N N 19 O5R CAN OAO SING N N 20 O5R CAN OAP SING N N 21 O5R CAW OAV SING N N 22 O5R CAW OAX SING N N 23 O5R CBG OAO SING N N 24 O5R CBG CBH SING N N 25 O5R CBC CBA SING N N 26 O5R OAV CAU SING N N 27 O5R CAU CAS SING N N 28 O5R OAP CAQ SING N N 29 O5R OAX CAY SING N N 30 O5R CBH CBI SING N N 31 O5R CBA CAY SING N N 32 O5R CBA OBB SING N N 33 O5R OAT CAS SING N N 34 O5R CBI CBJ SING N N 35 O5R CAS CAQ SING N N 36 O5R CAY CAZ SING N N 37 O5R CAQ CAR SING N N 38 O5R CBJ CBK SING N N 39 O5R CBK CBL SING N N 40 O5R CBL CBM SING N N 41 O5R CBM CBN SING N N 42 O5R CAY HAY SING N N 43 O5R CAW HAW SING N N 44 O5R CAU HAU SING N N 45 O5R CAS HAS SING N N 46 O5R CAR H63 SING N N 47 O5R CAR H64 SING N N 48 O5R CAR HAR SING N N 49 O5R CAN HAN SING N N 50 O5R C1 H1 SING N N 51 O5R C2 H21 SING N N 52 O5R C3 H31 SING N N 53 O5R C4 H41 SING N N 54 O5R C5 H5 SING N N 55 O5R C6 H61 SING N N 56 O5R C6 H62 SING N N 57 O5R CAM HAM SING N N 58 O5R CAQ HAQ SING N N 59 O5R CAZ HAZ SING N N 60 O5R CAZ H65 SING N N 61 O5R CAZ H66 SING N N 62 O5R CBA HBA SING N N 63 O5R CBC HBC SING N N 64 O5R CBE HBE SING N N 65 O5R CBG H67 SING N N 66 O5R CBG HBG SING N N 67 O5R CBH H68 SING N N 68 O5R CBH HBH SING N N 69 O5R CBI H69 SING N N 70 O5R CBI HBI SING N N 71 O5R CBJ HBJ SING N N 72 O5R CBJ H7A SING N N 73 O5R CBK H7B SING N N 74 O5R CBK HBK SING N N 75 O5R CBL H7C SING N N 76 O5R CBL HBL SING N N 77 O5R CBM H7D SING N N 78 O5R CBM HBM SING N N 79 O5R CBN H7E SING N N 80 O5R CBN H7F SING N N 81 O5R CBN HBN SING N N 82 O5R O2 H22 SING N N 83 O5R O3 H32 SING N N 84 O5R O4 H42 SING N N 85 O5R O6 H7G SING N N 86 O5R OAT HAT SING N N 87 O5R OBB HBB SING N N 88 O5R OBD HBD SING N N 89 O5R OBF HBF SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O5R InChI InChI 1.06 "InChI=1S/C26H48O14/c1-4-5-6-7-8-9-10-35-26-23(40-25-21(34)19(32)17(30)14(11-27)38-25)22(16(29)13(3)37-26)39-24-20(33)18(31)15(28)12(2)36-24/h12-34H,4-11H2,1-3H3/t12-,13+,14-,15-,16-,17+,18+,19+,20+,21-,22-,23+,24-,25-,26-/m1/s1" O5R InChIKey InChI 1.06 OIDIMGBVRRENOK-VJYSWUEHSA-N O5R SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCO[C@@H]1O[C@@H](C)[C@@H](O)[C@@H](O[C@H]2O[C@H](C)[C@@H](O)[C@H](O)[C@@H]2O)[C@@H]1O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O" O5R SMILES CACTVS 3.385 "CCCCCCCCO[CH]1O[CH](C)[CH](O)[CH](O[CH]2O[CH](C)[CH](O)[CH](O)[CH]2O)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O" O5R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCO[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)C)O)O)O)O[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O" O5R SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCOC1C(C(C(C(O1)C)O)OC2C(C(C(C(O2)C)O)O)O)OC3C(C(C(C(O3)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id O5R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-methyl-6-octoxy-3-oxidanyl-oxan-4-yl]oxy-6-methyl-oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O5R "Create component" 2023-08-21 PDBE O5R "Initial release" 2024-08-21 RCSB #