data_O6D # _chem_comp.id O6D _chem_comp.name "(2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H27 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-06-12 _chem_comp.pdbx_modified_date 2019-06-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.532 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O6D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6P9E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O6D C4 C1 C 0 1 Y N N -29.717 4.758 -22.832 5.837 -1.113 0.761 C4 O6D 1 O6D C5 C2 C 0 1 Y N N -30.322 4.514 -24.065 4.536 -0.659 0.598 C5 O6D 2 O6D C6 C3 C 0 1 Y N N -31.609 4.974 -24.353 4.290 0.475 -0.173 C6 O6D 3 O6D C7 C4 C 0 1 Y N N -32.238 4.601 -25.643 2.902 0.966 -0.351 C7 O6D 4 O6D C8 C5 C 0 1 Y N N -33.267 5.326 -26.231 2.645 2.102 -1.122 C8 O6D 5 O6D C9 C6 C 0 1 Y N N -33.656 4.971 -27.514 1.334 2.522 -1.259 C9 O6D 6 O6D C11 C7 C 0 1 Y N N -32.102 3.311 -27.503 0.643 0.763 0.060 C11 O6D 7 O6D C14 C8 C 0 1 N N S -30.530 1.504 -27.555 -1.692 0.602 0.451 C14 O6D 8 O6D C15 C9 C 0 1 N N N -30.362 0.115 -28.412 -2.697 -0.551 0.493 C15 O6D 9 O6D C24 C10 C 0 1 Y N N -33.926 -2.300 -28.986 -6.585 0.913 -0.499 C24 O6D 10 O6D C29 C11 C 0 1 Y N N -28.490 1.091 -32.202 -1.544 -3.550 -2.322 C29 O6D 11 O6D C23 C12 C 0 1 Y N N -32.700 -2.746 -29.439 -6.450 -0.165 0.354 C23 O6D 12 O6D C25 C13 C 0 1 Y N N -34.016 -1.083 -28.338 -5.462 1.517 -1.033 C25 O6D 13 O6D C28 C14 C 0 1 Y N N -29.867 1.076 -32.093 -2.224 -3.906 -1.172 C28 O6D 14 O6D C30 C15 C 0 1 Y N N -27.714 0.787 -31.101 -1.236 -2.223 -2.560 C30 O6D 15 O6D C1 C16 C 0 1 Y N N -32.288 5.694 -23.371 5.353 1.147 -0.776 C1 O6D 16 O6D C22 C17 C 0 1 Y N N -31.561 -1.979 -29.245 -5.192 -0.639 0.676 C22 O6D 17 O6D C26 C18 C 0 1 Y N N -32.880 -0.309 -28.145 -4.204 1.047 -0.707 C26 O6D 18 O6D C27 C19 C 0 1 Y N N -30.469 0.778 -30.880 -2.597 -2.936 -0.261 C27 O6D 19 O6D C31 C20 C 0 1 Y N N -28.313 0.456 -29.894 -1.610 -1.253 -1.649 C31 O6D 20 O6D C2 C21 C 0 1 Y N N -31.703 5.936 -22.139 6.644 0.688 -0.609 C2 O6D 21 O6D C21 C22 C 0 1 Y N N -31.633 -0.743 -28.601 -4.069 -0.035 0.143 C21 O6D 22 O6D C20 C23 C 0 1 Y N N -29.702 0.453 -29.764 -2.290 -1.609 -0.500 C20 O6D 23 O6D C3 C24 C 0 1 Y N N -30.420 5.478 -21.843 6.890 -0.433 0.161 C3 O6D 24 O6D C16 C25 C 0 1 N N N -29.215 2.260 -27.424 -2.018 1.592 1.540 C16 O6D 25 O6D C34 C26 C 0 1 N N N -29.768 5.807 -20.528 8.303 -0.924 0.344 C34 O6D 26 O6D C33 C27 C 0 1 N N N -34.708 5.726 -28.262 1.007 3.741 -2.082 C33 O6D 27 O6D C32 C28 C 0 1 N N N -29.817 -1.227 -26.398 -1.464 -1.640 2.237 C32 O6D 28 O6D N12 N1 N 0 1 Y N N -31.664 3.568 -26.272 1.881 0.328 0.217 N12 O6D 29 O6D N10 N2 N 0 1 Y N N -33.063 3.951 -28.167 0.370 1.840 -0.661 N10 O6D 30 O6D N35 N3 N 0 1 N N N -28.422 4.319 -22.608 6.089 -2.249 1.533 N35 O6D 31 O6D O17 O1 O 0 1 N N N -28.898 3.137 -28.210 -1.261 1.738 2.470 O17 O6D 32 O6D O18 O2 O 0 1 N N N -28.482 1.893 -26.386 -3.150 2.311 1.476 O18 O6D 33 O6D O13 O3 O 0 1 N N N -31.538 2.299 -28.179 -0.373 0.091 0.651 O13 O6D 34 O6D O19 O4 O 0 1 N N N -29.401 -0.666 -27.657 -2.722 -1.114 1.806 O19 O6D 35 O6D H1 H1 H 0 1 N N N -29.782 3.956 -24.815 3.717 -1.183 1.067 H1 O6D 36 O6D H2 H2 H 0 1 N N N -33.748 6.139 -25.707 3.451 2.640 -1.600 H2 O6D 37 O6D H3 H3 H 0 1 N N N -30.863 1.217 -26.546 -1.747 1.097 -0.518 H3 O6D 38 O6D H4 H4 H 0 1 N N N -34.811 -2.900 -29.138 -7.569 1.281 -0.754 H4 O6D 39 O6D H5 H5 H 0 1 N N N -28.023 1.339 -33.144 -1.249 -4.308 -3.032 H5 O6D 40 O6D H6 H6 H 0 1 N N N -32.628 -3.697 -29.947 -7.328 -0.638 0.771 H6 O6D 41 O6D H7 H7 H 0 1 N N N -34.973 -0.733 -27.981 -5.568 2.357 -1.704 H7 O6D 42 O6D H8 H8 H 0 1 N N N -30.477 1.297 -32.956 -2.466 -4.942 -0.987 H8 O6D 43 O6D H9 H9 H 0 1 N N N -26.637 0.807 -31.180 -0.705 -1.945 -3.458 H9 O6D 44 O6D H10 H10 H 0 1 N N N -33.281 6.067 -23.573 5.165 2.026 -1.375 H10 O6D 45 O6D H11 H11 H 0 1 N N N -30.607 -2.343 -29.597 -5.087 -1.482 1.343 H11 O6D 46 O6D H12 H12 H 0 1 N N N -32.961 0.640 -27.636 -3.326 1.519 -1.124 H12 O6D 47 O6D H13 H13 H 0 1 N N N -31.546 0.798 -30.800 -3.129 -3.214 0.637 H13 O6D 48 O6D H14 H14 H 0 1 N N N -27.697 0.198 -29.045 -1.369 -0.217 -1.835 H14 O6D 49 O6D H15 H15 H 0 1 N N N -32.252 6.491 -21.393 7.465 1.210 -1.078 H15 O6D 50 O6D H16 H16 H 0 1 N N N -29.231 6.763 -20.613 8.547 -1.631 -0.448 H16 O6D 51 O6D H17 H17 H 0 1 N N N -30.538 5.888 -19.747 8.990 -0.078 0.300 H17 O6D 52 O6D H18 H18 H 0 1 N N N -29.058 5.010 -20.262 8.394 -1.416 1.312 H18 O6D 53 O6D H19 H19 H 0 1 N N N -34.823 5.297 -29.268 0.826 3.445 -3.115 H19 O6D 54 O6D H20 H20 H 0 1 N N N -35.664 5.655 -27.722 0.114 4.221 -1.680 H20 O6D 55 O6D H21 H21 H 0 1 N N N -34.412 6.782 -28.346 1.843 4.439 -2.045 H21 O6D 56 O6D H22 H22 H 0 1 N N N -28.982 -1.787 -25.952 -0.758 -0.822 2.377 H22 O6D 57 O6D H23 H23 H 0 1 N N N -30.120 -0.417 -25.718 -1.596 -2.171 3.179 H23 O6D 58 O6D H24 H24 H 0 1 N N N -30.667 -1.906 -26.562 -1.080 -2.326 1.483 H24 O6D 59 O6D H25 H25 H 0 1 N N N -28.139 4.572 -21.683 6.999 -2.564 1.651 H25 O6D 60 O6D H26 H26 H 0 1 N N N -28.385 3.325 -22.708 5.354 -2.723 1.952 H26 O6D 61 O6D H27 H27 H 0 1 N N N -27.688 2.415 -26.358 -3.316 2.934 2.197 H27 O6D 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O6D C29 C28 DOUB Y N 1 O6D C29 C30 SING Y N 2 O6D C28 C27 SING Y N 3 O6D C30 C31 DOUB Y N 4 O6D C27 C20 DOUB Y N 5 O6D C31 C20 SING Y N 6 O6D C20 C15 SING N N 7 O6D C23 C22 DOUB Y N 8 O6D C23 C24 SING Y N 9 O6D C22 C21 SING Y N 10 O6D C24 C25 DOUB Y N 11 O6D C21 C15 SING N N 12 O6D C21 C26 DOUB Y N 13 O6D C15 O19 SING N N 14 O6D C15 C14 SING N N 15 O6D C25 C26 SING Y N 16 O6D C33 C9 SING N N 17 O6D O17 C16 DOUB N N 18 O6D O13 C14 SING N N 19 O6D O13 C11 SING N N 20 O6D N10 C9 DOUB Y N 21 O6D N10 C11 SING Y N 22 O6D O19 C32 SING N N 23 O6D C14 C16 SING N N 24 O6D C9 C8 SING Y N 25 O6D C11 N12 DOUB Y N 26 O6D C16 O18 SING N N 27 O6D N12 C7 SING Y N 28 O6D C8 C7 DOUB Y N 29 O6D C7 C6 SING N N 30 O6D C6 C5 DOUB Y N 31 O6D C6 C1 SING Y N 32 O6D C5 C4 SING Y N 33 O6D C1 C2 DOUB Y N 34 O6D C4 N35 SING N N 35 O6D C4 C3 DOUB Y N 36 O6D C2 C3 SING Y N 37 O6D C3 C34 SING N N 38 O6D C5 H1 SING N N 39 O6D C8 H2 SING N N 40 O6D C14 H3 SING N N 41 O6D C24 H4 SING N N 42 O6D C29 H5 SING N N 43 O6D C23 H6 SING N N 44 O6D C25 H7 SING N N 45 O6D C28 H8 SING N N 46 O6D C30 H9 SING N N 47 O6D C1 H10 SING N N 48 O6D C22 H11 SING N N 49 O6D C26 H12 SING N N 50 O6D C27 H13 SING N N 51 O6D C31 H14 SING N N 52 O6D C2 H15 SING N N 53 O6D C34 H16 SING N N 54 O6D C34 H17 SING N N 55 O6D C34 H18 SING N N 56 O6D C33 H19 SING N N 57 O6D C33 H20 SING N N 58 O6D C33 H21 SING N N 59 O6D C32 H22 SING N N 60 O6D C32 H23 SING N N 61 O6D C32 H24 SING N N 62 O6D N35 H25 SING N N 63 O6D N35 H26 SING N N 64 O6D O18 H27 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O6D SMILES ACDLabs 12.01 "c1(N)c(ccc(c1)c2cc(C)nc(n2)OC(C(O)=O)C(OC)(c3ccccc3)c4ccccc4)C" O6D InChI InChI 1.03 "InChI=1S/C28H27N3O4/c1-18-14-15-20(17-23(18)29)24-16-19(2)30-27(31-24)35-25(26(32)33)28(34-3,21-10-6-4-7-11-21)22-12-8-5-9-13-22/h4-17,25H,29H2,1-3H3,(H,32,33)/t25-/m1/s1" O6D InChIKey InChI 1.03 GDPBXJYDHBGQBK-RUZDIDTESA-N O6D SMILES_CANONICAL CACTVS 3.385 "COC([C@H](Oc1nc(C)cc(n1)c2ccc(C)c(N)c2)C(O)=O)(c3ccccc3)c4ccccc4" O6D SMILES CACTVS 3.385 "COC([CH](Oc1nc(C)cc(n1)c2ccc(C)c(N)c2)C(O)=O)(c3ccccc3)c4ccccc4" O6D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1N)c2cc(nc(n2)O[C@H](C(=O)O)C(c3ccccc3)(c4ccccc4)OC)C" O6D SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1N)c2cc(nc(n2)OC(C(=O)O)C(c3ccccc3)(c4ccccc4)OC)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier O6D "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic acid" O6D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[4-(3-azanyl-4-methyl-phenyl)-6-methyl-pyrimidin-2-yl]oxy-3-methoxy-3,3-diphenyl-propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O6D "Create component" 2019-06-12 RCSB O6D "Initial release" 2019-06-26 RCSB ##