data_O7M # _chem_comp.id O7M _chem_comp.name ;6-(methoxycarbonyl)uridine 5'-(dihydrogen phosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N2 O11 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-10-30 _chem_comp.pdbx_modified_date 2013-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 382.217 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O7M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O7M O3P O3P O 0 1 N N N 18.995 33.505 37.445 4.729 -1.923 0.020 O3P O7M 1 O7M P P P 0 1 N N N 19.096 34.653 38.402 4.725 -0.629 -0.698 P O7M 2 O7M O1P O1P O 0 1 N N N 17.805 34.860 39.136 5.868 0.327 -0.087 O1P O7M 3 O7M O2P O2P O 0 1 N N N 20.293 34.544 39.340 5.015 -0.882 -2.261 O2P O7M 4 O7M "O5'" "O5'" O 0 1 N N N 19.444 35.994 37.568 3.288 0.076 -0.526 "O5'" O7M 5 O7M "C5'" "C5'" C 0 1 N N N 18.397 36.761 36.924 2.696 0.337 0.748 "C5'" O7M 6 O7M "C4'" "C4'" C 0 1 N N R 19.143 37.890 36.280 1.338 1.012 0.551 "C4'" O7M 7 O7M "O4'" "O4'" O 0 1 N N N 18.230 38.629 35.435 0.389 0.078 -0.009 "O4'" O7M 8 O7M "C3'" "C3'" C 0 1 N N S 19.658 38.944 37.226 0.735 1.417 1.915 "C3'" O7M 9 O7M "O3'" "O3'" O 0 1 N N N 20.794 39.623 36.668 0.978 2.800 2.179 "O3'" O7M 10 O7M "C2'" "C2'" C 0 1 N N R 18.494 39.918 37.402 -0.778 1.155 1.750 "C2'" O7M 11 O7M "O2'" "O2'" O 0 1 N N N 18.994 41.204 37.744 -1.516 2.368 1.907 "O2'" O7M 12 O7M "C1'" "C1'" C 0 1 N N R 17.951 39.931 35.969 -0.912 0.623 0.306 "C1'" O7M 13 O7M N1 N1 N 0 1 N N N 16.499 40.186 35.874 -1.933 -0.425 0.240 N1 O7M 14 O7M C2 C2 C 0 1 N N N 15.588 39.511 36.520 -1.746 -1.571 0.916 C2 O7M 15 O7M O2 O2 O 0 1 N N N 15.917 38.554 37.252 -0.730 -1.714 1.569 O2 O7M 16 O7M N3 N3 N 0 1 N N N 14.268 39.827 36.455 -2.652 -2.564 0.890 N3 O7M 17 O7M C4 C4 C 0 1 N N N 13.840 40.825 35.677 -3.788 -2.434 0.174 C4 O7M 18 O7M O4 O4 O 0 1 N N N 12.581 41.033 35.632 -4.610 -3.330 0.148 O4 O7M 19 O7M C5 C5 C 0 1 N N N 14.744 41.589 34.924 -4.015 -1.191 -0.574 C5 O7M 20 O7M C6 C6 C 0 1 N N N 16.073 41.192 35.029 -3.071 -0.216 -0.508 C6 O7M 21 O7M C7 C7 C 0 1 N N N 16.951 41.548 33.905 -3.257 1.056 -1.246 C7 O7M 22 O7M O71 O71 O 0 1 N N N 17.754 40.749 33.458 -3.742 2.018 -0.686 O71 O7M 23 O7M O72 O72 O 0 1 N N N 16.828 42.872 33.327 -2.889 1.145 -2.539 O72 O7M 24 O7M C8 C8 C 0 1 N N N 16.392 43.051 31.988 -3.100 2.422 -3.198 C8 O7M 25 O7M H1 H1 H 0 1 N N N 17.169 34.216 38.847 5.923 1.194 -0.511 H1 O7M 26 O7M H2 H2 H 0 1 N N N 20.775 33.748 39.148 5.866 -1.305 -2.440 H2 O7M 27 O7M H3 H3 H 0 1 N N N 17.673 37.137 37.662 2.561 -0.602 1.285 H3 O7M 28 O7M H4 H4 H 0 1 N N N 17.871 36.156 36.171 3.349 0.994 1.324 H4 O7M 29 O7M H5 H5 H 0 1 N N N 19.977 37.490 35.685 1.439 1.885 -0.093 H5 O7M 30 O7M H6 H6 H 0 1 N N N 19.909 38.488 38.195 1.145 0.797 2.713 H6 O7M 31 O7M H7 H7 H 0 1 N N N 21.102 40.282 37.280 0.621 3.108 3.023 H7 O7M 32 O7M H8 H8 H 0 1 N N N 17.748 39.536 38.114 -1.117 0.407 2.467 H8 O7M 33 O7M H9 H9 H 0 1 N N N 19.329 41.188 38.633 -1.419 2.778 2.777 H9 O7M 34 O7M H10 H10 H 0 1 N N N 18.494 40.696 35.395 -1.157 1.436 -0.377 H10 O7M 35 O7M H11 H11 H 0 1 N N N 13.608 39.306 36.997 -2.488 -3.380 1.388 H11 O7M 36 O7M H12 H12 H 0 1 N N N 14.432 42.421 34.310 -4.915 -1.051 -1.154 H12 O7M 37 O7M H15 H15 H 0 1 N N N 16.369 44.125 31.750 -2.537 3.197 -2.679 H15 O7M 38 O7M H16 H16 H 0 1 N N N 17.086 42.539 31.305 -2.762 2.357 -4.232 H16 O7M 39 O7M H17 H17 H 0 1 N N N 15.383 42.628 31.871 -4.162 2.669 -3.178 H17 O7M 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O7M C8 O72 SING N N 1 O7M O72 C7 SING N N 2 O7M O71 C7 DOUB N N 3 O7M C7 C6 SING N N 4 O7M C5 C6 DOUB N N 5 O7M C5 C4 SING N N 6 O7M C6 N1 SING N N 7 O7M "O4'" "C1'" SING N N 8 O7M "O4'" "C4'" SING N N 9 O7M O4 C4 DOUB N N 10 O7M C4 N3 SING N N 11 O7M N1 "C1'" SING N N 12 O7M N1 C2 SING N N 13 O7M "C1'" "C2'" SING N N 14 O7M "C4'" "C5'" SING N N 15 O7M "C4'" "C3'" SING N N 16 O7M N3 C2 SING N N 17 O7M C2 O2 DOUB N N 18 O7M "O3'" "C3'" SING N N 19 O7M "C5'" "O5'" SING N N 20 O7M "C3'" "C2'" SING N N 21 O7M "C2'" "O2'" SING N N 22 O7M O3P P DOUB N N 23 O7M "O5'" P SING N N 24 O7M P O1P SING N N 25 O7M P O2P SING N N 26 O7M O1P H1 SING N N 27 O7M O2P H2 SING N N 28 O7M "C5'" H3 SING N N 29 O7M "C5'" H4 SING N N 30 O7M "C4'" H5 SING N N 31 O7M "C3'" H6 SING N N 32 O7M "O3'" H7 SING N N 33 O7M "C2'" H8 SING N N 34 O7M "O2'" H9 SING N N 35 O7M "C1'" H10 SING N N 36 O7M N3 H11 SING N N 37 O7M C5 H12 SING N N 38 O7M C8 H15 SING N N 39 O7M C8 H16 SING N N 40 O7M C8 H17 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O7M SMILES ACDLabs 12.01 "O=C(OC)C=1N(C(=O)NC(=O)C=1)C2OC(C(O)C2O)COP(=O)(O)O" O7M InChI InChI 1.03 "InChI=1S/C11H15N2O11P/c1-22-10(17)4-2-6(14)12-11(18)13(4)9-8(16)7(15)5(24-9)3-23-25(19,20)21/h2,5,7-9,15-16H,3H2,1H3,(H,12,14,18)(H2,19,20,21)/t5-,7-,8-,9-/m1/s1" O7M InChIKey InChI 1.03 VOHILSGGFMXAFJ-ZOQUXTDFSA-N O7M SMILES_CANONICAL CACTVS 3.385 "COC(=O)C1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" O7M SMILES CACTVS 3.385 "COC(=O)C1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" O7M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COC(=O)C1=CC(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" O7M SMILES "OpenEye OEToolkits" 1.7.6 "COC(=O)C1=CC(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier O7M "SYSTEMATIC NAME" ACDLabs 12.01 ;6-(methoxycarbonyl)uridine 5'-(dihydrogen phosphate) ; O7M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "methyl 3-[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-2,6-bis(oxidanylidene)pyrimidine-4-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O7M "Create component" 2013-10-30 PDBJ O7M "Initial release" 2013-12-04 RCSB #