data_O7N # _chem_comp.id O7N _chem_comp.name "1-[(8~{R},15~{S},18~{S})-15,18-bis(4-azanylbutyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H50 N10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-18 _chem_comp.pdbx_modified_date 2020-07-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 630.782 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O7N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Y3B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O7N O3 O1 O 0 1 N N N 10.270 -16.541 2.451 -3.826 4.191 1.019 O3 O7N 1 O7N C4 C1 C 0 1 N N N 4.003 -15.006 7.069 -3.678 -3.530 -1.391 C4 O7N 2 O7N C5 C2 C 0 1 N N N 2.803 -15.679 6.413 -2.492 -3.921 -2.275 C5 O7N 3 O7N O4 O2 O 0 1 N N N 7.405 -14.782 3.880 -4.269 0.872 -2.362 O4 O7N 4 O7N C6 C3 C 0 1 N N N 2.411 -14.917 4.119 -0.150 -3.581 -1.840 C6 O7N 5 O7N N1 N1 N 0 1 N N N 10.010 -11.068 6.853 -7.052 -1.674 1.156 N1 O7N 6 O7N C7 C4 C 0 1 N N S 1.779 -13.840 3.247 1.098 -3.768 -1.016 C7 O7N 7 O7N C8 C5 C 0 1 N N N 1.247 -14.448 1.951 0.735 -3.780 0.470 C8 O7N 8 O7N N2 N2 N 0 1 N N N 8.294 -12.568 6.537 -5.013 -0.537 0.687 N2 O7N 9 O7N C9 C6 C 0 1 N N N 0.659 -13.411 1.006 1.994 -4.034 1.301 C9 O7N 10 O7N C10 C7 C 0 1 N N N -0.627 -12.749 1.489 1.631 -4.045 2.787 C10 O7N 11 O7N C11 C8 C 0 1 N N N -1.085 -11.688 0.504 2.891 -4.299 3.618 C11 O7N 12 O7N C12 C9 C 0 1 N N N 2.676 -11.564 3.414 2.193 -1.739 -0.298 C12 O7N 13 O7N N3 N3 N 0 1 N N N 2.183 -14.803 5.426 -1.314 -4.153 -1.409 N3 O7N 14 O7N C13 C10 C 0 1 N N S 3.721 -10.573 2.911 3.123 -0.575 -0.522 C13 O7N 15 O7N C14 C11 C 0 1 N N N 2.978 -9.385 2.289 4.549 -1.089 -0.733 C14 O7N 16 O7N C15 C12 C 0 1 N N N 3.876 -8.284 1.753 5.467 0.083 -1.082 C15 O7N 17 O7N N4 N4 N 0 1 N N N -2.470 -11.214 0.713 2.542 -4.310 5.045 N4 O7N 18 O7N N N5 N 0 1 N N N 8.965 -11.240 4.671 -5.420 -1.433 2.787 N O7N 19 O7N C C13 C 0 1 N N N 9.101 -11.586 5.945 -5.821 -1.218 1.566 C O7N 20 O7N O O3 O 0 1 N N N 3.111 -15.811 3.616 -0.122 -2.933 -2.865 O O7N 21 O7N C1 C14 C 0 1 N N R 7.307 -13.315 5.777 -5.464 -0.295 -0.686 C1 O7N 22 O7N C16 C15 C 0 1 N N N 3.117 -7.020 1.333 6.893 -0.431 -1.293 C16 O7N 23 O7N C17 C16 C 0 1 N N N 2.199 -7.190 0.140 7.812 0.741 -1.643 C17 O7N 24 O7N C18 C17 C 0 1 N N N 5.936 -11.390 2.231 2.796 1.616 0.421 C18 O7N 25 O7N C19 C18 C 0 1 N N N 6.763 -11.779 1.022 2.735 2.576 1.580 C19 O7N 26 O7N C2 C19 C 0 1 N N N 6.243 -13.855 6.740 -5.159 -1.523 -1.546 C2 O7N 27 O7N C20 C20 C 0 1 Y N N 8.251 -11.645 1.231 2.072 3.856 1.140 C20 O7N 28 O7N C21 C21 C 0 1 Y N N 8.890 -10.428 1.058 2.841 4.913 0.690 C21 O7N 29 O7N C22 C22 C 0 1 Y N N 10.258 -10.323 1.228 2.233 6.086 0.284 C22 O7N 30 O7N C23 C23 C 0 1 Y N N 11.005 -11.443 1.557 0.856 6.203 0.333 C23 O7N 31 O7N C24 C24 C 0 1 Y N N 10.393 -12.679 1.707 0.087 5.146 0.784 C24 O7N 32 O7N C25 C25 C 0 1 Y N N 9.016 -12.764 1.542 0.696 3.972 1.186 C25 O7N 33 O7N C26 C26 C 0 1 N N N 11.185 -13.912 2.068 -1.412 5.274 0.836 C26 O7N 34 O7N C27 C27 C 0 1 N N N 10.226 -15.737 3.384 -3.254 3.972 -0.027 C27 O7N 35 O7N C28 C28 C 0 1 N N N 9.621 -16.131 4.721 -3.917 3.158 -1.107 C28 O7N 36 O7N C29 C29 C 0 1 N N N 7.911 -14.448 4.945 -4.745 0.904 -1.247 C29 O7N 37 O7N C3 C30 C 0 1 N N N 5.084 -14.563 6.055 -3.737 -2.007 -1.258 C3 O7N 38 O7N N5 N6 N 0 1 N N N 2.782 -12.821 2.964 2.024 -2.652 -1.294 N5 O7N 39 O7N N6 N7 N 0 1 N N N 1.781 -5.836 -0.342 9.180 0.247 -1.845 N6 O7N 40 O7N N7 N8 N 0 1 N N N 4.644 -11.177 1.957 3.078 0.302 0.671 N7 O7N 41 O7N N8 N9 N 0 1 N N N 10.710 -14.496 3.316 -2.000 4.459 -0.245 N8 O7N 42 O7N N9 N10 N 0 1 N N N 9.011 -15.027 5.424 -4.638 2.028 -0.477 N9 O7N 43 O7N O1 O4 O 0 1 N N N 1.795 -11.193 4.198 1.603 -1.861 0.754 O1 O7N 44 O7N O2 O5 O 0 1 N N N 6.429 -11.246 3.347 2.599 2.001 -0.712 O2 O7N 45 O7N H1 H1 H 0 1 N N N 4.457 -15.715 7.777 -4.603 -3.891 -1.842 H1 O7N 46 O7N H2 H2 H 0 1 N N N 3.651 -14.118 7.614 -3.558 -3.977 -0.403 H2 O7N 47 O7N H3 H3 H 0 1 N N N 2.063 -15.927 7.188 -2.729 -4.832 -2.823 H3 O7N 48 O7N H4 H4 H 0 1 N N N 3.136 -16.601 5.915 -2.280 -3.115 -2.978 H4 O7N 49 O7N H5 H5 H 0 1 N N N 10.024 -11.406 7.794 -7.622 -2.155 1.776 H5 O7N 50 O7N H6 H6 H 0 1 N N N 10.652 -10.356 6.567 -7.351 -1.514 0.247 H6 O7N 51 O7N H7 H7 H 0 1 N N N 0.939 -13.389 3.796 1.573 -4.712 -1.283 H7 O7N 52 O7N H8 H8 H 0 1 N N N 0.463 -15.178 2.202 0.306 -2.817 0.746 H8 O7N 53 O7N H9 H9 H 0 1 N N N 2.075 -14.960 1.438 0.009 -4.570 0.660 H9 O7N 54 O7N H10 H10 H 0 1 N N N 8.401 -12.760 7.513 -4.145 -0.215 0.975 H10 O7N 55 O7N H11 H11 H 0 1 N N N 0.448 -13.906 0.047 2.424 -4.997 1.024 H11 O7N 56 O7N H12 H12 H 0 1 N N N 1.411 -12.623 0.854 2.721 -3.244 1.110 H12 O7N 57 O7N H13 H13 H 0 1 N N N -0.447 -12.280 2.468 1.202 -3.082 3.063 H13 O7N 58 O7N H14 H14 H 0 1 N N N -1.412 -13.513 1.588 0.905 -4.835 2.977 H14 O7N 59 O7N H15 H15 H 0 1 N N N -1.015 -12.108 -0.510 3.320 -5.262 3.341 H15 O7N 60 O7N H16 H16 H 0 1 N N N -0.409 -10.824 0.591 3.617 -3.509 3.427 H16 O7N 61 O7N H17 H17 H 0 1 N N N 1.561 -14.087 5.744 -1.364 -4.676 -0.594 H17 O7N 62 O7N H18 H18 H 0 1 N N N 4.290 -10.205 3.777 2.803 -0.014 -1.400 H18 O7N 63 O7N H19 H19 H 0 1 N N N 2.324 -8.949 3.059 4.901 -1.567 0.182 H19 O7N 64 O7N H20 H20 H 0 1 N N N 2.365 -9.762 1.457 4.557 -1.813 -1.547 H20 O7N 65 O7N H21 H21 H 0 1 N N N 4.416 -8.672 0.877 5.115 0.561 -1.996 H21 O7N 66 O7N H22 H22 H 0 1 N N N 4.597 -8.011 2.537 5.459 0.807 -0.268 H22 O7N 67 O7N H23 H23 H 0 1 N N N -2.693 -10.521 0.027 1.822 -4.991 5.236 H23 O7N 68 O7N H24 H24 H 0 1 N N N -3.102 -11.984 0.626 3.358 -4.476 5.615 H24 O7N 69 O7N H26 H26 H 0 1 N N N 9.615 -10.529 4.405 -5.990 -1.914 3.407 H26 O7N 70 O7N H27 H27 H 0 1 N N N 6.805 -12.625 5.083 -6.538 -0.108 -0.688 H27 O7N 71 O7N H28 H28 H 0 1 N N N 3.857 -6.244 1.086 7.246 -0.909 -0.379 H28 O7N 72 O7N H29 H29 H 0 1 N N N 2.508 -6.688 2.187 6.901 -1.155 -2.108 H29 O7N 73 O7N H30 H30 H 0 1 N N N 1.311 -7.768 0.436 7.459 1.219 -2.557 H30 O7N 74 O7N H31 H31 H 0 1 N N N 2.731 -7.721 -0.663 7.803 1.465 -0.828 H31 O7N 75 O7N H32 H32 H 0 1 N N N 6.472 -11.133 0.181 2.159 2.129 2.391 H32 O7N 76 O7N H33 H33 H 0 1 N N N 6.541 -12.827 0.773 3.745 2.790 1.928 H33 O7N 77 O7N H34 H34 H 0 1 N N N 6.727 -14.568 7.424 -5.867 -2.317 -1.311 H34 O7N 78 O7N H35 H35 H 0 1 N N N 5.839 -13.010 7.317 -5.246 -1.259 -2.600 H35 O7N 79 O7N H36 H36 H 0 1 N N N 8.315 -9.555 0.788 3.916 4.823 0.655 H36 O7N 80 O7N H37 H37 H 0 1 N N N 10.745 -9.367 1.104 2.833 6.911 -0.071 H37 O7N 81 O7N H38 H38 H 0 1 N N N 12.072 -11.353 1.698 0.381 7.121 0.019 H38 O7N 82 O7N H39 H39 H 0 1 N N N 8.529 -13.721 1.658 0.096 3.145 1.536 H39 O7N 83 O7N H40 H40 H 0 1 N N N 11.081 -14.654 1.262 -1.776 4.918 1.800 H40 O7N 84 O7N H41 H41 H 0 1 N N N 12.244 -13.638 2.180 -1.695 6.318 0.701 H41 O7N 85 O7N H42 H42 H 0 1 N N N 8.853 -16.898 4.543 -4.623 3.782 -1.654 H42 O7N 86 O7N H43 H43 H 0 1 N N N 10.417 -16.550 5.354 -3.161 2.773 -1.791 H43 O7N 87 O7N H44 H44 H 0 1 N N N 4.629 -13.877 5.326 -3.453 -1.720 -0.246 H44 O7N 88 O7N H45 H45 H 0 1 N N N 5.468 -15.452 5.533 -3.047 -1.554 -1.971 H45 O7N 89 O7N H46 H46 H 0 1 N N N 3.579 -13.070 2.413 2.489 -2.574 -2.142 H46 O7N 90 O7N H47 H47 H 0 1 N N N 1.174 -5.935 -1.130 9.807 1.003 -2.078 H47 O7N 91 O7N H48 H48 H 0 1 N N N 1.300 -5.355 0.391 9.506 -0.256 -1.034 H48 O7N 92 O7N H50 H50 H 0 1 N N N 4.296 -11.444 1.058 3.238 -0.033 1.567 H50 O7N 93 O7N H51 H51 H 0 1 N N N 10.748 -13.947 4.151 -1.519 4.280 -1.069 H51 O7N 94 O7N H52 H52 H 0 1 N N N 9.417 -14.695 6.276 -5.008 2.081 0.418 H52 O7N 95 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O7N N6 C17 SING N N 1 O7N C17 C16 SING N N 2 O7N C11 N4 SING N N 3 O7N C11 C10 SING N N 4 O7N C9 C10 SING N N 5 O7N C9 C8 SING N N 6 O7N C19 C20 SING N N 7 O7N C19 C18 SING N N 8 O7N C21 C22 DOUB Y N 9 O7N C21 C20 SING Y N 10 O7N C22 C23 SING Y N 11 O7N C20 C25 DOUB Y N 12 O7N C16 C15 SING N N 13 O7N C25 C24 SING Y N 14 O7N C23 C24 DOUB Y N 15 O7N C24 C26 SING N N 16 O7N C15 C14 SING N N 17 O7N C8 C7 SING N N 18 O7N N7 C18 SING N N 19 O7N N7 C13 SING N N 20 O7N C26 N8 SING N N 21 O7N C18 O2 DOUB N N 22 O7N C14 C13 SING N N 23 O7N O3 C27 DOUB N N 24 O7N C13 C12 SING N N 25 O7N N5 C7 SING N N 26 O7N N5 C12 SING N N 27 O7N C7 C6 SING N N 28 O7N N8 C27 SING N N 29 O7N C27 C28 SING N N 30 O7N C12 O1 DOUB N N 31 O7N O C6 DOUB N N 32 O7N O4 C29 DOUB N N 33 O7N C6 N3 SING N N 34 O7N N C DOUB N N 35 O7N C28 N9 SING N N 36 O7N C29 N9 SING N N 37 O7N C29 C1 SING N N 38 O7N N3 C5 SING N N 39 O7N C1 N2 SING N N 40 O7N C1 C2 SING N N 41 O7N C N2 SING N N 42 O7N C N1 SING N N 43 O7N C3 C2 SING N N 44 O7N C3 C4 SING N N 45 O7N C5 C4 SING N N 46 O7N C4 H1 SING N N 47 O7N C4 H2 SING N N 48 O7N C5 H3 SING N N 49 O7N C5 H4 SING N N 50 O7N N1 H5 SING N N 51 O7N N1 H6 SING N N 52 O7N C7 H7 SING N N 53 O7N C8 H8 SING N N 54 O7N C8 H9 SING N N 55 O7N N2 H10 SING N N 56 O7N C9 H11 SING N N 57 O7N C9 H12 SING N N 58 O7N C10 H13 SING N N 59 O7N C10 H14 SING N N 60 O7N C11 H15 SING N N 61 O7N C11 H16 SING N N 62 O7N N3 H17 SING N N 63 O7N C13 H18 SING N N 64 O7N C14 H19 SING N N 65 O7N C14 H20 SING N N 66 O7N C15 H21 SING N N 67 O7N C15 H22 SING N N 68 O7N N4 H23 SING N N 69 O7N N4 H24 SING N N 70 O7N N H26 SING N N 71 O7N C1 H27 SING N N 72 O7N C16 H28 SING N N 73 O7N C16 H29 SING N N 74 O7N C17 H30 SING N N 75 O7N C17 H31 SING N N 76 O7N C19 H32 SING N N 77 O7N C19 H33 SING N N 78 O7N C2 H34 SING N N 79 O7N C2 H35 SING N N 80 O7N C21 H36 SING N N 81 O7N C22 H37 SING N N 82 O7N C23 H38 SING N N 83 O7N C25 H39 SING N N 84 O7N C26 H40 SING N N 85 O7N C26 H41 SING N N 86 O7N C28 H42 SING N N 87 O7N C28 H43 SING N N 88 O7N C3 H44 SING N N 89 O7N C3 H45 SING N N 90 O7N N5 H46 SING N N 91 O7N N6 H47 SING N N 92 O7N N6 H48 SING N N 93 O7N N7 H50 SING N N 94 O7N N8 H51 SING N N 95 O7N N9 H52 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O7N InChI InChI 1.03 "InChI=1S/C30H50N10O5/c31-13-4-1-10-22-27(43)35-15-6-3-12-23(40-30(33)34)28(44)37-19-26(42)36-18-21-9-7-8-20(16-21)17-25(41)38-24(29(45)39-22)11-2-5-14-32/h7-9,16,22-24H,1-6,10-15,17-19,31-32H2,(H,35,43)(H,36,42)(H,37,44)(H,38,41)(H,39,45)(H4,33,34,40)/t22-,23+,24-/m0/s1" O7N InChIKey InChI 1.03 MJPHQBODCHXACB-VXNXHJTFSA-N O7N SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@@H]1NC(=O)Cc2cccc(CNC(=O)CNC(=O)[C@@H](CCCCNC(=O)[C@H](CCCCN)NC1=O)NC(N)=N)c2" O7N SMILES CACTVS 3.385 "NCCCC[CH]1NC(=O)Cc2cccc(CNC(=O)CNC(=O)[CH](CCCCNC(=O)[CH](CCCCN)NC1=O)NC(N)=N)c2" O7N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)CNC1=O)CCCCN)CCCCN" O7N SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)CNC(=O)CNC(=O)C(CCCCNC(=O)C(NC(=O)C(NC(=O)C2)CCCCN)CCCCN)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id O7N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(8~{R},15~{S},18~{S})-15,18-bis(4-azanylbutyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O7N "Create component" 2020-02-18 PDBE O7N "Initial release" 2020-07-08 RCSB ##