data_O7T # _chem_comp.id O7T _chem_comp.name deltarasin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H37 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-phenyl-1-[(1~{S})-2-[4-[1-(phenylmethyl)benzimidazol-2-yl]phenoxy]-1-piperidin-4-yl-ethyl]benzimidazole" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-18 _chem_comp.pdbx_modified_date 2022-06-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 603.755 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O7T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Y3F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O7T C45 C1 C 0 1 Y N N -19.747 -1.390 -18.368 -3.016 3.894 3.622 C45 O7T 1 O7T C22 C2 C 0 1 Y N N -22.832 10.158 -16.559 5.302 -4.304 0.628 C22 O7T 2 O7T C44 C3 C 0 1 Y N N -19.568 -1.078 -17.015 -3.225 2.528 3.689 C44 O7T 3 O7T C46 C4 C 0 1 Y N N -19.911 -0.358 -19.297 -3.234 4.576 2.438 C46 O7T 4 O7T C21 C5 C 0 1 Y N N -24.118 10.531 -16.165 6.347 -3.553 1.132 C21 O7T 5 O7T C23 C6 C 0 1 Y N N -22.377 8.856 -16.286 4.080 -3.707 0.377 C23 O7T 6 O7T C13 C7 C 0 1 Y N N -28.024 9.581 -10.588 8.272 2.276 -1.684 C13 O7T 7 O7T C37 C8 C 0 1 Y N N -19.352 7.257 -17.071 -5.978 0.226 -3.730 C37 O7T 8 O7T C14 C9 C 0 1 Y N N -28.414 9.519 -11.936 8.529 1.613 -0.493 C14 O7T 9 O7T C38 C10 C 0 1 Y N N -18.807 7.037 -15.802 -5.471 -0.970 -3.241 C38 O7T 10 O7T C43 C11 C 0 1 Y N N -19.521 0.261 -16.601 -3.647 1.836 2.573 C43 O7T 11 O7T C47 C12 C 0 1 Y N N -19.871 0.974 -18.870 -3.663 3.896 1.316 C47 O7T 12 O7T C5 C13 C 0 1 Y N N -22.116 6.936 -12.578 1.855 0.428 -1.781 C5 O7T 13 O7T C7 C14 C 0 1 Y N N -23.479 4.930 -12.517 1.969 0.673 0.621 C7 O7T 14 O7T C20 C15 C 0 1 Y N N -24.944 9.602 -15.504 6.170 -2.206 1.388 C20 O7T 15 O7T C24 C16 C 0 1 Y N N -23.213 7.934 -15.636 3.903 -2.361 0.633 C24 O7T 16 O7T C12 C17 C 0 1 Y N N -26.830 8.958 -10.169 6.990 2.356 -2.177 C12 O7T 17 O7T C36 C18 C 0 1 Y N N -19.730 6.177 -17.890 -5.860 1.380 -3.009 C36 O7T 18 O7T C15 C19 C 0 1 Y N N -27.632 8.857 -12.905 7.502 1.024 0.215 C15 O7T 19 O7T C39 C20 C 0 1 Y N N -18.653 5.724 -15.331 -4.842 -1.013 -2.015 C39 O7T 20 O7T C4 C21 C 0 1 Y N N -20.979 6.159 -12.825 0.511 0.142 -1.683 C4 O7T 21 O7T C8 C22 C 0 1 Y N N -22.336 4.153 -12.786 0.626 0.381 0.710 C8 O7T 22 O7T C42 C23 C 0 1 Y N N -19.669 1.304 -17.522 -3.864 2.516 1.374 C42 O7T 23 O7T C6 C24 C 0 1 Y N N -23.366 6.324 -12.436 2.596 0.693 -0.627 C6 O7T 24 O7T C19 C25 C 0 1 Y N N -24.507 8.304 -15.229 4.948 -1.610 1.138 C19 O7T 25 O7T C11 C26 C 0 1 Y N N -26.023 8.314 -11.136 5.937 1.761 -1.475 C11 O7T 26 O7T C35 C27 C 0 1 Y N N -19.600 4.858 -17.412 -5.221 1.361 -1.765 C35 O7T 27 O7T C16 C28 C 0 1 Y N N -26.434 8.276 -12.474 6.203 1.095 -0.266 C16 O7T 28 O7T C34 C29 C 0 1 Y N N -19.070 4.654 -16.143 -4.716 0.147 -1.265 C34 O7T 29 O7T C3 C30 C 0 1 Y N N -21.083 4.767 -12.948 -0.108 0.117 -0.440 C3 O7T 30 O7T C9 C31 C 0 1 Y N N -24.532 7.153 -12.180 4.039 0.995 -0.726 C9 O7T 31 O7T C41 C32 C 0 1 Y N N -19.582 2.718 -17.161 -4.323 1.781 0.175 C41 O7T 32 O7T C28 C33 C 0 1 N N N -17.182 1.976 -12.893 -2.862 -2.905 1.188 C28 O7T 33 O7T C32 C34 C 0 1 N N N -16.390 2.475 -15.282 -5.144 -2.320 0.367 C32 O7T 34 O7T C29 C35 C 0 1 N N N -15.727 2.143 -12.426 -3.084 -4.331 0.680 C29 O7T 35 O7T C31 C36 C 0 1 N N N -14.974 2.625 -14.726 -5.300 -3.763 -0.118 C31 O7T 36 O7T C27 C37 C 0 1 N N N -17.451 2.780 -14.191 -3.665 -1.929 0.324 C27 O7T 37 O7T C18 C38 C 0 1 N N N -25.407 7.312 -14.549 4.755 -0.141 1.418 C18 O7T 38 O7T C1 C39 C 0 1 N N N -20.025 2.810 -13.819 -2.006 -0.173 0.962 C1 O7T 39 O7T C25 C40 C 0 1 N N S -18.836 2.543 -14.760 -3.495 -0.508 0.865 C25 O7T 40 O7T N10 N1 N 0 1 Y N N -24.841 7.620 -10.985 4.603 1.670 -1.698 N10 O7T 41 O7T N40 N2 N 0 1 Y N N -19.901 3.657 -18.021 -4.956 2.316 -0.840 N40 O7T 42 O7T N17 N3 N 0 1 Y N N -25.454 7.548 -13.118 4.986 0.624 0.190 N17 O7T 43 O7T N33 N4 N 0 1 Y N N -19.091 3.275 -16.001 -4.151 0.440 -0.039 N33 O7T 44 O7T N30 N5 N 0 1 N N N -14.789 1.791 -13.523 -4.514 -4.657 0.741 N30 O7T 45 O7T O2 O1 O 0 1 N N N -19.872 4.081 -13.170 -1.433 -0.164 -0.348 O2 O7T 46 O7T H1 H1 H 0 1 N N N -19.758 -2.420 -18.692 -2.685 4.431 4.498 H1 O7T 47 O7T H2 H2 H 0 1 N N N -22.192 10.863 -17.069 5.442 -5.355 0.424 H2 O7T 48 O7T H3 H3 H 0 1 N N N -19.466 -1.870 -16.288 -3.056 2.003 4.617 H3 O7T 49 O7T H4 H4 H 0 1 N N N -20.068 -0.588 -20.340 -3.070 5.642 2.391 H4 O7T 50 O7T H5 H5 H 0 1 N N N -24.478 11.529 -16.367 7.301 -4.018 1.329 H5 O7T 51 O7T H6 H6 H 0 1 N N N -21.379 8.563 -16.578 3.264 -4.294 -0.018 H6 O7T 52 O7T H7 H7 H 0 1 N N N -28.639 10.106 -9.872 9.085 2.737 -2.227 H7 O7T 53 O7T H8 H8 H 0 1 N N N -19.484 8.268 -17.427 -6.469 0.245 -4.692 H8 O7T 54 O7T H9 H9 H 0 1 N N N -29.337 9.991 -12.238 9.540 1.557 -0.117 H9 O7T 55 O7T H10 H10 H 0 1 N N N -18.506 7.873 -15.188 -5.570 -1.873 -3.826 H10 O7T 56 O7T H11 H11 H 0 1 N N N -19.368 0.490 -15.557 -3.810 0.770 2.627 H11 O7T 57 O7T H12 H12 H 0 1 N N N -19.998 1.765 -19.594 -3.833 4.429 0.392 H12 O7T 58 O7T H13 H13 H 0 1 N N N -22.029 8.009 -12.497 2.336 0.443 -2.747 H13 O7T 59 O7T H14 H14 H 0 1 N N N -24.438 4.454 -12.374 2.539 0.878 1.515 H14 O7T 60 O7T H15 H15 H 0 1 N N N -25.938 9.900 -15.203 6.986 -1.619 1.783 H15 O7T 61 O7T H16 H16 H 0 1 N N N -22.859 6.931 -15.447 2.948 -1.895 0.438 H16 O7T 62 O7T H17 H17 H 0 1 N N N -26.537 8.972 -9.129 6.797 2.878 -3.103 H17 O7T 63 O7T H18 H18 H 0 1 N N N -20.118 6.358 -18.881 -6.258 2.305 -3.398 H18 O7T 64 O7T H19 H19 H 0 1 N N N -27.945 8.801 -13.937 7.709 0.513 1.144 H19 O7T 65 O7T H20 H20 H 0 1 N N N -18.221 5.538 -14.359 -4.450 -1.947 -1.639 H20 O7T 66 O7T H21 H21 H 0 1 N N N -20.015 6.635 -12.922 -0.063 -0.063 -2.575 H21 O7T 67 O7T H22 H22 H 0 1 N N N -22.423 3.080 -12.868 0.140 0.365 1.675 H22 O7T 68 O7T H23 H23 H 0 1 N N N -17.856 2.336 -12.102 -3.194 -2.832 2.224 H23 O7T 69 O7T H24 H24 H 0 1 N N N -17.377 0.910 -13.084 -1.802 -2.658 1.128 H24 O7T 70 O7T H25 H25 H 0 1 N N N -16.524 3.175 -16.120 -5.716 -1.655 -0.281 H25 O7T 71 O7T H26 H26 H 0 1 N N N -16.528 1.444 -15.640 -5.513 -2.238 1.389 H26 O7T 72 O7T H27 H27 H 0 1 N N N -15.544 1.482 -11.566 -2.738 -4.407 -0.351 H27 O7T 73 O7T H28 H28 H 0 1 N N N -15.560 3.188 -12.127 -2.525 -5.030 1.302 H28 O7T 74 O7T H29 H29 H 0 1 N N N -14.251 2.314 -15.494 -6.351 -4.049 -0.075 H29 O7T 75 O7T H30 H30 H 0 1 N N N -14.800 3.679 -14.464 -4.944 -3.841 -1.146 H30 O7T 76 O7T H31 H31 H 0 1 N N N -17.368 3.848 -13.940 -3.306 -1.973 -0.705 H31 O7T 77 O7T H32 H32 H 0 1 N N N -26.422 7.405 -14.962 3.737 0.031 1.767 H32 O7T 78 O7T H33 H33 H 0 1 N N N -25.027 6.296 -14.734 5.461 0.179 2.184 H33 O7T 79 O7T H34 H34 H 0 1 N N N -20.957 2.811 -14.403 -1.883 0.809 1.418 H34 O7T 80 O7T H35 H35 H 0 1 N N N -20.070 2.017 -13.058 -1.503 -0.923 1.572 H35 O7T 81 O7T H36 H36 H 0 1 N N N -18.884 1.473 -15.009 -3.948 -0.439 1.854 H36 O7T 82 O7T H37 H37 H 0 1 N N N -14.935 0.834 -13.773 -4.850 -4.632 1.692 H37 O7T 83 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O7T C46 C47 DOUB Y N 1 O7T C46 C45 SING Y N 2 O7T C47 C42 SING Y N 3 O7T C45 C44 DOUB Y N 4 O7T N40 C35 SING Y N 5 O7T N40 C41 DOUB Y N 6 O7T C36 C35 DOUB Y N 7 O7T C36 C37 SING Y N 8 O7T C42 C41 SING N N 9 O7T C42 C43 DOUB Y N 10 O7T C35 C34 SING Y N 11 O7T C41 N33 SING Y N 12 O7T C37 C38 DOUB Y N 13 O7T C44 C43 SING Y N 14 O7T C22 C23 DOUB Y N 15 O7T C22 C21 SING Y N 16 O7T C23 C24 SING Y N 17 O7T C21 C20 DOUB Y N 18 O7T C34 N33 SING Y N 19 O7T C34 C39 DOUB Y N 20 O7T N33 C25 SING N N 21 O7T C38 C39 SING Y N 22 O7T C24 C19 DOUB Y N 23 O7T C20 C19 SING Y N 24 O7T C32 C31 SING N N 25 O7T C32 C27 SING N N 26 O7T C19 C18 SING N N 27 O7T C25 C27 SING N N 28 O7T C25 C1 SING N N 29 O7T C31 N30 SING N N 30 O7T C18 N17 SING N N 31 O7T C27 C28 SING N N 32 O7T C1 O2 SING N N 33 O7T N30 C29 SING N N 34 O7T O2 C3 SING N N 35 O7T N17 C16 SING Y N 36 O7T N17 C9 SING Y N 37 O7T C3 C4 DOUB Y N 38 O7T C3 C8 SING Y N 39 O7T C15 C16 DOUB Y N 40 O7T C15 C14 SING Y N 41 O7T C28 C29 SING N N 42 O7T C4 C5 SING Y N 43 O7T C8 C7 DOUB Y N 44 O7T C5 C6 DOUB Y N 45 O7T C7 C6 SING Y N 46 O7T C16 C11 SING Y N 47 O7T C6 C9 SING N N 48 O7T C9 N10 DOUB Y N 49 O7T C14 C13 DOUB Y N 50 O7T C11 N10 SING Y N 51 O7T C11 C12 DOUB Y N 52 O7T C13 C12 SING Y N 53 O7T C45 H1 SING N N 54 O7T C22 H2 SING N N 55 O7T C44 H3 SING N N 56 O7T C46 H4 SING N N 57 O7T C21 H5 SING N N 58 O7T C23 H6 SING N N 59 O7T C13 H7 SING N N 60 O7T C37 H8 SING N N 61 O7T C14 H9 SING N N 62 O7T C38 H10 SING N N 63 O7T C43 H11 SING N N 64 O7T C47 H12 SING N N 65 O7T C5 H13 SING N N 66 O7T C7 H14 SING N N 67 O7T C20 H15 SING N N 68 O7T C24 H16 SING N N 69 O7T C12 H17 SING N N 70 O7T C36 H18 SING N N 71 O7T C15 H19 SING N N 72 O7T C39 H20 SING N N 73 O7T C4 H21 SING N N 74 O7T C8 H22 SING N N 75 O7T C28 H23 SING N N 76 O7T C28 H24 SING N N 77 O7T C32 H25 SING N N 78 O7T C32 H26 SING N N 79 O7T C29 H27 SING N N 80 O7T C29 H28 SING N N 81 O7T C31 H29 SING N N 82 O7T C31 H30 SING N N 83 O7T C27 H31 SING N N 84 O7T C18 H32 SING N N 85 O7T C18 H33 SING N N 86 O7T C1 H34 SING N N 87 O7T C1 H35 SING N N 88 O7T C25 H36 SING N N 89 O7T N30 H37 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O7T InChI InChI 1.03 "InChI=1S/C40H37N5O/c1-3-11-29(12-4-1)27-44-36-17-9-7-15-34(36)42-39(44)32-19-21-33(22-20-32)46-28-38(30-23-25-41-26-24-30)45-37-18-10-8-16-35(37)43-40(45)31-13-5-2-6-14-31/h1-22,30,38,41H,23-28H2/t38-/m1/s1" O7T InChIKey InChI 1.03 LTZKEDSUXKTTTC-KXQOOQHDSA-N O7T SMILES_CANONICAL CACTVS 3.385 "C1CC(CCN1)[C@@H](COc2ccc(cc2)c3nc4ccccc4n3Cc5ccccc5)n6c7ccccc7nc6c8ccccc8" O7T SMILES CACTVS 3.385 "C1CC(CCN1)[CH](COc2ccc(cc2)c3nc4ccccc4n3Cc5ccccc5)n6c7ccccc7nc6c8ccccc8" O7T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cn2c3ccccc3nc2c4ccc(cc4)OC[C@H](C5CCNCC5)n6c7ccccc7nc6c8ccccc8" O7T SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cn2c3ccccc3nc2c4ccc(cc4)OCC(C5CCNCC5)n6c7ccccc7nc6c8ccccc8" # _pdbx_chem_comp_identifier.comp_id O7T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-phenyl-1-[(1~{S})-2-[4-[1-(phenylmethyl)benzimidazol-2-yl]phenoxy]-1-piperidin-4-yl-ethyl]benzimidazole" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id O7T _pdbx_chem_comp_synonyms.name "2-phenyl-1-[(1~{S})-2-[4-[1-(phenylmethyl)benzimidazol-2-yl]phenoxy]-1-piperidin-4-yl-ethyl]benzimidazole" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O7T "Create component" 2020-02-18 PDBE O7T "Modify synonyms" 2020-06-05 PDBE O7T "Initial release" 2022-06-08 RCSB ##