data_O9B
#
_chem_comp.id O9B
_chem_comp.name "(2~{R})-1-methylpiperidine-2-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H13 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-02-24
_chem_comp.pdbx_modified_date 2021-03-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 143.184
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code O9B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Y4M
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O9B N5 N1 N 0 1 N N N -3.613 36.587 17.935 -0.446 0.963 0.129 N5 O9B 1
O9B C31 C1 C 0 1 N N N -3.131 34.841 16.209 1.666 -0.235 0.051 C31 O9B 2
O9B O6 O1 O 0 1 N N N -4.325 34.522 16.198 2.033 0.483 0.950 O6 O9B 3
O9B C32 C2 C 0 1 N N R -2.633 36.075 16.970 0.213 -0.259 -0.349 C32 O9B 4
O9B C33 C3 C 0 1 N N N -2.219 37.183 15.992 -0.466 -1.483 0.270 C33 O9B 5
O9B C34 C4 C 0 1 N N N -1.762 38.442 16.715 -1.946 -1.492 -0.122 C34 O9B 6
O9B C35 C5 C 0 1 N N N -2.834 38.905 17.682 -2.598 -0.187 0.344 C35 O9B 7
O9B C36 C6 C 0 1 N N N -3.196 37.800 18.647 -1.857 0.999 -0.277 C36 O9B 8
O9B C37 C7 C 0 1 N N N -4.048 35.566 18.889 0.266 2.161 -0.335 C37 O9B 9
O9B O1 O2 O 0 1 N Y N -2.200 34.127 15.554 2.552 -1.013 -0.591 O1 O9B 10
O9B H2 H2 H 0 1 N N N -1.732 35.775 17.525 0.137 -0.312 -1.435 H2 O9B 11
O9B H3 H3 H 0 1 N N N -3.079 37.433 15.354 0.013 -2.390 -0.097 H3 O9B 12
O9B H4 H4 H 0 1 N N N -1.393 36.814 15.366 -0.378 -1.437 1.356 H4 O9B 13
O9B H5 H5 H 0 1 N N N -0.838 38.227 17.272 -2.035 -1.576 -1.205 H5 O9B 14
O9B H6 H6 H 0 1 N N N -1.570 39.235 15.978 -2.444 -2.338 0.352 H6 O9B 15
O9B H7 H7 H 0 1 N N N -2.460 39.771 18.248 -3.642 -0.169 0.030 H7 O9B 16
O9B H8 H8 H 0 1 N N N -3.730 39.197 17.115 -2.543 -0.121 1.431 H8 O9B 17
O9B H9 H9 H 0 1 N N N -2.320 37.567 19.270 -2.309 1.929 0.064 H9 O9B 18
O9B H10 H10 H 0 1 N N N -4.022 38.141 19.289 -1.924 0.940 -1.363 H10 O9B 19
O9B H11 H11 H 0 1 N N N -4.779 36.002 19.586 -0.241 3.052 0.037 H11 O9B 20
O9B H12 H12 H 0 1 N N N -4.513 34.731 18.345 1.290 2.143 0.038 H12 O9B 21
O9B H13 H13 H 0 1 N N N -3.179 35.197 19.453 0.277 2.178 -1.425 H13 O9B 22
O9B H14 H14 H 0 1 N N N -2.613 33.391 15.119 3.473 -0.963 -0.299 H14 O9B 23
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O9B C33 C34 SING N N 1
O9B C33 C32 SING N N 2
O9B O6 C31 DOUB N N 3
O9B C31 C32 SING N N 4
O9B C34 C35 SING N N 5
O9B C32 N5 SING N N 6
O9B C35 C36 SING N N 7
O9B N5 C36 SING N N 8
O9B N5 C37 SING N N 9
O9B C31 O1 SING N N 10
O9B C32 H2 SING N N 11
O9B C33 H3 SING N N 12
O9B C33 H4 SING N N 13
O9B C34 H5 SING N N 14
O9B C34 H6 SING N N 15
O9B C35 H7 SING N N 16
O9B C35 H8 SING N N 17
O9B C36 H9 SING N N 18
O9B C36 H10 SING N N 19
O9B C37 H11 SING N N 20
O9B C37 H12 SING N N 21
O9B C37 H13 SING N N 22
O9B O1 H14 SING N N 23
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O9B InChI InChI 1.03 "InChI=1S/C7H13NO2/c1-8-5-3-2-4-6(8)7(9)10/h6H,2-5H2,1H3,(H,9,10)/t6-/m1/s1"
O9B InChIKey InChI 1.03 BPSLZWSRHTULGU-ZCFIWIBFSA-N
O9B SMILES_CANONICAL CACTVS 3.385 "CN1CCCC[C@@H]1C(O)=O"
O9B SMILES CACTVS 3.385 "CN1CCCC[CH]1C(O)=O"
O9B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCCC[C@@H]1C(=O)O"
O9B SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCCCC1C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id O9B
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{R})-1-methylpiperidine-2-carboxylic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O9B "Create component" 2020-02-24 PDBE
O9B "Initial release" 2021-03-31 RCSB
##