data_O9N
#
_chem_comp.id O9N
_chem_comp.name "methyl (2~{S},4~{S})-2,4-bis(azanyl)-5-phenyl-pentanoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H18 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-02-24
_chem_comp.pdbx_modified_date 2021-03-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 222.284
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code O9N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Y4N
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O9N C26 C1 C 0 1 N N S -4.408 22.086 13.216 0.264 0.091 0.005 C26 O9N 1
O9N C28 C2 C 0 1 Y N N -6.884 22.565 13.595 2.650 -0.381 0.487 C28 O9N 2
O9N N5 N1 N 0 1 N N N -4.295 23.534 13.213 0.517 1.526 -0.181 N5 O9N 3
O9N C27 C3 C 0 1 N N N -5.858 21.707 12.887 1.248 -0.471 1.033 C27 O9N 4
O9N C29 C4 C 0 1 Y N N -7.492 23.628 12.940 3.173 -1.427 -0.252 C29 O9N 5
O9N C30 C5 C 0 1 Y N N -8.387 24.454 13.606 4.456 -1.342 -0.757 C30 O9N 6
O9N C31 C6 C 0 1 Y N N -8.653 24.245 14.942 5.217 -0.211 -0.525 C31 O9N 7
O9N C32 C7 C 0 1 Y N N -8.046 23.204 15.606 4.694 0.834 0.213 C32 O9N 8
O9N C33 C8 C 0 1 Y N N -7.147 22.382 14.944 3.411 0.749 0.719 C33 O9N 9
O9N C34 C9 C 0 1 N N N -3.420 21.484 12.205 -1.168 -0.113 0.506 C34 O9N 10
O9N C35 C10 C 0 1 N N S -1.946 21.352 12.611 -2.154 0.335 -0.574 C35 O9N 11
O9N N6 N2 N 0 1 N N N -1.250 22.618 12.813 -2.021 1.782 -0.789 N6 O9N 12
O9N C44 C11 C 0 1 N N N -1.160 20.454 11.664 -3.560 0.021 -0.132 C44 O9N 13
O9N O8 O1 O 0 1 N N N -0.733 19.363 11.961 -4.255 0.891 0.336 O8 O9N 14
O9N O9 O2 O 0 1 N N N -0.974 21.036 10.479 -4.040 -1.226 -0.259 O9 O9N 15
O9N C45 C12 C 0 1 N N N -0.340 20.246 9.442 -5.403 -1.457 0.188 C45 O9N 16
O9N H1 H1 H 0 1 N N N -4.164 21.699 14.216 0.394 -0.427 -0.945 H1 O9N 17
O9N H2 H2 H 0 1 N N N -4.940 23.921 13.872 0.402 2.029 0.687 H2 O9N 18
O9N H3 H3 H 0 1 N N N -3.363 23.796 13.465 1.434 1.684 -0.572 H3 O9N 19
O9N H5 H5 H 0 1 N N N -6.007 21.811 11.802 1.180 0.105 1.955 H5 O9N 20
O9N H6 H6 H 0 1 N N N -6.019 20.659 13.181 1.004 -1.514 1.237 H6 O9N 21
O9N H7 H7 H 0 1 N N N -7.266 23.814 11.900 2.578 -2.310 -0.433 H7 O9N 22
O9N H8 H8 H 0 1 N N N -8.875 25.260 13.078 4.865 -2.159 -1.334 H8 O9N 23
O9N H9 H9 H 0 1 N N N -9.336 24.897 15.466 6.221 -0.145 -0.919 H9 O9N 24
O9N H10 H10 H 0 1 N N N -8.271 23.026 16.647 5.289 1.717 0.394 H10 O9N 25
O9N H11 H11 H 0 1 N N N -6.647 21.592 15.484 3.001 1.567 1.292 H11 O9N 26
O9N H12 H12 H 0 1 N N N -3.453 22.114 11.304 -1.327 -1.168 0.728 H12 O9N 27
O9N H13 H13 H 0 1 N N N -3.781 20.474 11.960 -1.325 0.477 1.409 H13 O9N 28
O9N H14 H14 H 0 1 N N N -1.949 20.836 13.582 -1.939 -0.191 -1.504 H14 O9N 29
O9N H15 H15 H 0 1 N N N -1.779 23.194 13.436 -2.616 2.092 -1.542 H15 O9N 30
O9N H16 H16 H 0 1 N N N -0.347 22.443 13.206 -2.215 2.293 0.059 H16 O9N 31
O9N H18 H18 H 0 1 N N N -0.251 20.847 8.525 -5.483 -1.219 1.248 H18 O9N 32
O9N H19 H19 H 0 1 N N N 0.661 19.938 9.777 -6.083 -0.822 -0.380 H19 O9N 33
O9N H20 H20 H 0 1 N N N -0.949 19.353 9.237 -5.665 -2.503 0.030 H20 O9N 34
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O9N C45 O9 SING N N 1
O9N O9 C44 SING N N 2
O9N C44 O8 DOUB N N 3
O9N C44 C35 SING N N 4
O9N C34 C35 SING N N 5
O9N C34 C26 SING N N 6
O9N C35 N6 SING N N 7
O9N C27 C26 SING N N 8
O9N C27 C28 SING N N 9
O9N C29 C28 DOUB Y N 10
O9N C29 C30 SING Y N 11
O9N N5 C26 SING N N 12
O9N C28 C33 SING Y N 13
O9N C30 C31 DOUB Y N 14
O9N C31 C32 SING Y N 15
O9N C33 C32 DOUB Y N 16
O9N C26 H1 SING N N 17
O9N N5 H2 SING N N 18
O9N N5 H3 SING N N 19
O9N C27 H5 SING N N 20
O9N C27 H6 SING N N 21
O9N C29 H7 SING N N 22
O9N C30 H8 SING N N 23
O9N C31 H9 SING N N 24
O9N C32 H10 SING N N 25
O9N C33 H11 SING N N 26
O9N C34 H12 SING N N 27
O9N C34 H13 SING N N 28
O9N C35 H14 SING N N 29
O9N N6 H15 SING N N 30
O9N N6 H16 SING N N 31
O9N C45 H18 SING N N 32
O9N C45 H19 SING N N 33
O9N C45 H20 SING N N 34
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O9N InChI InChI 1.03 "InChI=1S/C12H18N2O2/c1-16-12(15)11(14)8-10(13)7-9-5-3-2-4-6-9/h2-6,10-11H,7-8,13-14H2,1H3/t10-,11-/m0/s1"
O9N InChIKey InChI 1.03 GXDWYXRQHBMHOS-QWRGUYRKSA-N
O9N SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@H](N)C[C@@H](N)Cc1ccccc1"
O9N SMILES CACTVS 3.385 "COC(=O)[CH](N)C[CH](N)Cc1ccccc1"
O9N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)[C@H](C[C@H](Cc1ccccc1)N)N"
O9N SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)C(CC(Cc1ccccc1)N)N"
#
_pdbx_chem_comp_identifier.comp_id O9N
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "methyl (2~{S},4~{S})-2,4-bis(azanyl)-5-phenyl-pentanoate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O9N "Create component" 2020-02-24 PDBE
O9N "Initial release" 2021-03-31 RCSB
##