data_OCF # _chem_comp.id OCF _chem_comp.name "3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]oxypropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id PMP _chem_comp.pdbx_synonyms ;PYRIDOXAMINE-5'-PHOSPHATE linked to 3-aminooxypropionic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-04 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.219 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OCF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AYJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OCF N1 N1 N 0 1 Y N N 13.314 -1.619 15.109 1.945 -3.221 -0.001 N1 OCF 1 OCF C2 C2A C 0 1 Y N N 12.199 -1.928 15.754 0.649 -3.459 0.003 C2 OCF 2 OCF C2A C2 C 0 1 N N N 12.307 -2.729 17.006 0.154 -4.883 0.013 C2A OCF 3 OCF C3 C3 C 0 1 Y N N 10.944 -1.566 15.230 -0.265 -2.416 -0.001 C3 OCF 4 OCF O3 O2P O 0 1 N N N 9.812 -1.901 15.915 -1.599 -2.667 0.004 O3 OCF 5 OCF C4 C4 C 0 1 Y N N 10.892 -0.825 14.045 0.214 -1.096 -0.009 C4 OCF 6 OCF C4A C5 C 0 1 N N N 9.640 -0.408 13.451 -0.717 0.049 -0.013 C4A OCF 7 OCF N N2 N 0 1 N N N 8.663 -0.028 14.154 -1.994 -0.156 -0.008 N OCF 8 OCF C5 C6 C 0 1 Y N N 12.078 -0.471 13.410 1.600 -0.897 -0.013 C5 OCF 9 OCF C6 C7 C 0 1 Y N N 13.249 -0.920 13.948 2.434 -1.995 -0.009 C6 OCF 10 OCF C5A C8 C 0 1 N N N 12.046 0.326 12.138 2.172 0.497 -0.022 C5A OCF 11 OCF O4P O2 O 0 1 N N N 11.435 -0.535 11.141 3.599 0.426 -0.025 O4P OCF 12 OCF P P1 P 0 1 N N N 10.562 0.059 9.918 4.542 1.731 -0.034 P OCF 13 OCF O2P O3 O 0 1 N N N 9.340 0.613 10.605 4.339 2.549 1.338 O2P OCF 14 OCF O3P O4 O 0 1 N N N 11.434 1.128 9.219 6.082 1.280 -0.167 O3P OCF 15 OCF O1P O5 O 0 1 N N N 10.291 -1.138 9.015 4.179 2.594 -1.181 O1P OCF 16 OCF OG OG O 0 1 N N N 7.605 0.383 13.318 -2.888 0.942 -0.012 OG OCF 17 OCF CB CB C 0 1 N N N 7.070 1.622 13.792 -4.267 0.570 -0.006 CB OCF 18 OCF CA CA C 0 1 N N N 7.012 1.594 15.321 -5.136 1.829 -0.011 CA OCF 19 OCF C C C 0 1 N N N 6.157 0.530 16.008 -6.591 1.436 -0.005 C OCF 20 OCF OXT OXT O 0 1 N N N 6.737 -0.244 16.828 -7.542 2.383 -0.007 OXT OCF 21 OCF O O O 0 1 N N N 4.912 0.472 15.764 -6.901 0.268 0.002 O OCF 22 OCF H2A1 H1 H 0 0 N N N 13.365 -2.951 17.210 0.037 -5.220 1.043 H2A1 OCF 23 OCF H2A2 H2 H 0 0 N N N 11.885 -2.156 17.845 -0.807 -4.936 -0.499 H2A2 OCF 24 OCF H2A3 H3 H 0 0 N N N 11.751 -3.671 16.888 0.874 -5.521 -0.499 H2A3 OCF 25 OCF HO3 H4 H 0 1 N N N 10.046 -2.401 16.688 -1.983 -2.735 0.889 HO3 OCF 26 OCF H6 H8 H 0 1 N N N 14.169 -0.709 13.424 3.504 -1.850 -0.012 H6 OCF 27 OCF H5A1 H9 H 0 0 N N N 13.067 0.600 11.833 1.832 1.023 -0.914 H5A1 OCF 28 OCF H5A2 H10 H 0 0 N N N 11.447 1.238 12.274 1.836 1.033 0.866 H5A2 OCF 29 OCF HOP2 H11 H 0 0 N N N 8.577 0.106 10.352 4.558 2.045 2.133 HOP2 OCF 30 OCF HOP3 H12 H 0 0 N N N 11.645 0.839 8.339 6.707 2.017 -0.179 HOP3 OCF 31 OCF HB1 HB1 H 0 1 N N N 7.715 2.451 13.464 -4.486 -0.026 -0.892 HB1 OCF 32 OCF HB2 HB2 H 0 1 N N N 6.057 1.764 13.388 -4.482 -0.016 0.888 HB2 OCF 33 OCF HA1 HA1 H 0 1 N N N 8.043 1.462 15.681 -4.917 2.425 0.876 HA1 OCF 34 OCF HA2 HA2 H 0 1 N N N 6.633 2.573 15.648 -4.922 2.415 -0.904 HA2 OCF 35 OCF HOXT HOXT H 0 1 N N N 6.101 -0.841 17.204 -8.461 2.082 -0.003 HOXT OCF 36 OCF H4A H5 H 0 0 N N N 9.539 -0.422 12.376 -0.332 1.058 -0.019 H4A OCF 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OCF O1P P DOUB N N 1 OCF O3P P SING N N 2 OCF P O2P SING N N 3 OCF P O4P SING N N 4 OCF O4P C5A SING N N 5 OCF C5A C5 SING N N 6 OCF OG CB SING N N 7 OCF OG N SING N N 8 OCF C5 C6 DOUB Y N 9 OCF C5 C4 SING Y N 10 OCF C4A C4 SING N N 11 OCF C4A N DOUB N E 12 OCF CB CA SING N N 13 OCF C6 N1 SING Y N 14 OCF C4 C3 DOUB Y N 15 OCF N1 C2 DOUB Y N 16 OCF C3 C2 SING Y N 17 OCF C3 O3 SING N N 18 OCF CA C SING N N 19 OCF C2 C2A SING N N 20 OCF O C DOUB N N 21 OCF C OXT SING N N 22 OCF C2A H2A1 SING N N 23 OCF C2A H2A2 SING N N 24 OCF C2A H2A3 SING N N 25 OCF O3 HO3 SING N N 26 OCF C6 H6 SING N N 27 OCF C5A H5A1 SING N N 28 OCF C5A H5A2 SING N N 29 OCF O2P HOP2 SING N N 30 OCF O3P HOP3 SING N N 31 OCF CB HB1 SING N N 32 OCF CB HB2 SING N N 33 OCF CA HA1 SING N N 34 OCF CA HA2 SING N N 35 OCF OXT HOXT SING N N 36 OCF C4A H4A SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OCF InChI InChI 1.06 "InChI=1S/C11H15N2O8P/c1-7-11(16)9(5-13-20-3-2-10(14)15)8(4-12-7)6-21-22(17,18)19/h4-5,16H,2-3,6H2,1H3,(H,14,15)(H2,17,18,19)/b13-5+" OCF InChIKey InChI 1.06 WFKOVQOIGDESOJ-WLRTZDKTSA-N OCF SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(\C=N\OCCC(O)=O)c1O" OCF SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NOCCC(O)=O)c1O" OCF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/OCCC(=O)O)O" OCF SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NOCCC(=O)O)O" # _pdbx_chem_comp_identifier.comp_id OCF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]oxypropanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id OCF _pdbx_chem_comp_synonyms.name ;PYRIDOXAMINE-5'-PHOSPHATE linked to 3-aminooxypropionic acid ; _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OCF "Create component" 2022-09-04 PDBE OCF "Other modification" 2022-10-20 PDBE OCF "Initial release" 2022-11-16 RCSB #