data_OD2 # _chem_comp.id OD2 _chem_comp.name "2-[6-(4-methylsulfanylphenyl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H12 N2 O2 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-27 _chem_comp.pdbx_modified_date 2020-03-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.463 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OD2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Y6F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OD2 C C1 C 0 1 N N N 58.968 3.834 -0.888 6.211 -1.542 0.001 C OD2 1 OD2 O O1 O 0 1 N N N 57.889 4.358 -0.698 5.740 -2.655 -0.000 O OD2 2 OD2 O1 O2 O 0 1 N N N 59.987 3.984 -0.113 7.543 -1.378 -0.004 O1 OD2 3 OD2 C1 C2 C 0 1 N N N 59.283 2.950 -2.063 5.303 -0.340 0.002 C1 OD2 4 OD2 S S1 S 0 1 N N N 61.029 2.502 -2.140 3.578 -0.886 0.000 S OD2 5 OD2 C2 C3 C 0 1 Y N N 61.122 1.569 -3.617 2.762 0.675 0.001 C2 OD2 6 OD2 N1 N1 N 0 1 Y N N 60.035 1.404 -4.383 3.463 1.804 0.002 N1 OD2 7 OD2 C14 C4 C 0 1 Y N N 60.246 0.762 -5.534 2.857 2.977 0.003 C14 OD2 8 OD2 N N2 N 0 1 Y N N 61.383 0.235 -5.998 1.553 3.097 0.003 N OD2 9 OD2 C4 C5 C 0 1 Y N N 62.454 0.398 -5.178 0.750 2.006 0.002 C4 OD2 10 OD2 C5 C6 C 0 1 Y N N 63.804 -0.026 -5.430 -0.648 1.928 0.001 C5 OD2 11 OD2 C6 C7 C 0 1 Y N N 64.687 0.350 -4.492 -1.157 0.691 0.000 C6 OD2 12 OD2 S1 S2 S 0 1 Y N N 63.915 1.223 -3.209 0.128 -0.506 -0.001 S1 OD2 13 OD2 C3 C8 C 0 1 Y N N 62.365 1.084 -3.967 1.359 0.748 -0.005 C3 OD2 14 OD2 C7 C9 C 0 1 Y N N 66.142 0.163 -4.471 -2.601 0.375 -0.000 C7 OD2 15 OD2 C12 C10 C 0 1 Y N N 66.793 -0.506 -5.506 -3.543 1.406 -0.005 C12 OD2 16 OD2 C11 C11 C 0 1 Y N N 68.153 -0.757 -5.439 -4.888 1.109 -0.005 C11 OD2 17 OD2 C10 C12 C 0 1 Y N N 68.886 -0.350 -4.335 -5.309 -0.217 -0.001 C10 OD2 18 OD2 S2 S3 S 0 1 N N N 70.590 -0.793 -4.342 -7.030 -0.594 -0.001 S2 OD2 19 OD2 C13 C13 C 0 1 N N N 71.127 -0.491 -2.655 -7.051 -2.408 0.006 C13 OD2 20 OD2 C9 C14 C 0 1 Y N N 68.253 0.339 -3.311 -4.373 -1.247 0.004 C9 OD2 21 OD2 C8 C15 C 0 1 Y N N 66.898 0.597 -3.381 -3.026 -0.955 -0.002 C8 OD2 22 OD2 H1 H1 H 0 1 N N N 59.755 4.557 0.609 8.085 -2.179 -0.008 H1 OD2 23 OD2 H2 H2 H 0 1 N N N 59.014 3.482 -2.987 5.494 0.259 0.892 H2 OD2 24 OD2 H3 H3 H 0 1 N N N 58.686 2.030 -1.983 5.495 0.261 -0.888 H3 OD2 25 OD2 H4 H4 H 0 1 N N N 59.384 0.654 -6.175 3.460 3.873 0.005 H4 OD2 26 OD2 H5 H5 H 0 1 N N N 64.084 -0.599 -6.301 -1.274 2.809 0.002 H5 OD2 27 OD2 H6 H6 H 0 1 N N N 66.231 -0.832 -6.369 -3.217 2.436 -0.008 H6 OD2 28 OD2 H7 H7 H 0 1 N N N 68.645 -1.272 -6.251 -5.616 1.906 -0.009 H7 OD2 29 OD2 H8 H8 H 0 1 N N N 72.194 -0.742 -2.559 -6.540 -2.780 -0.882 H8 OD2 30 OD2 H9 H9 H 0 1 N N N 70.976 0.570 -2.407 -6.542 -2.773 0.898 H9 OD2 31 OD2 H10 H10 H 0 1 N N N 70.540 -1.116 -1.966 -8.083 -2.759 0.006 H10 OD2 32 OD2 H11 H11 H 0 1 N N N 68.821 0.675 -2.456 -4.702 -2.275 0.007 H11 OD2 33 OD2 H12 H12 H 0 1 N N N 66.417 1.142 -2.582 -2.300 -1.755 -0.002 H12 OD2 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OD2 N C14 DOUB Y N 1 OD2 N C4 SING Y N 2 OD2 C14 N1 SING Y N 3 OD2 C12 C11 DOUB Y N 4 OD2 C12 C7 SING Y N 5 OD2 C11 C10 SING Y N 6 OD2 C5 C4 SING Y N 7 OD2 C5 C6 DOUB Y N 8 OD2 C4 C3 DOUB Y N 9 OD2 C6 C7 SING N N 10 OD2 C6 S1 SING Y N 11 OD2 C7 C8 DOUB Y N 12 OD2 N1 C2 DOUB Y N 13 OD2 S2 C10 SING N N 14 OD2 S2 C13 SING N N 15 OD2 C10 C9 DOUB Y N 16 OD2 C3 C2 SING Y N 17 OD2 C3 S1 SING Y N 18 OD2 C2 S SING N N 19 OD2 C8 C9 SING Y N 20 OD2 S C1 SING N N 21 OD2 C1 C SING N N 22 OD2 C O DOUB N N 23 OD2 C O1 SING N N 24 OD2 O1 H1 SING N N 25 OD2 C1 H2 SING N N 26 OD2 C1 H3 SING N N 27 OD2 C14 H4 SING N N 28 OD2 C5 H5 SING N N 29 OD2 C12 H6 SING N N 30 OD2 C11 H7 SING N N 31 OD2 C13 H8 SING N N 32 OD2 C13 H9 SING N N 33 OD2 C13 H10 SING N N 34 OD2 C9 H11 SING N N 35 OD2 C8 H12 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OD2 InChI InChI 1.03 "InChI=1S/C15H12N2O2S3/c1-20-10-4-2-9(3-5-10)12-6-11-14(22-12)15(17-8-16-11)21-7-13(18)19/h2-6,8H,7H2,1H3,(H,18,19)" OD2 InChIKey InChI 1.03 KJCQGDBVLKOAHP-UHFFFAOYSA-N OD2 SMILES_CANONICAL CACTVS 3.385 "CSc1ccc(cc1)c2sc3c(SCC(O)=O)ncnc3c2" OD2 SMILES CACTVS 3.385 "CSc1ccc(cc1)c2sc3c(SCC(O)=O)ncnc3c2" OD2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSc1ccc(cc1)c2cc3c(s2)c(ncn3)SCC(=O)O" OD2 SMILES "OpenEye OEToolkits" 2.0.7 "CSc1ccc(cc1)c2cc3c(s2)c(ncn3)SCC(=O)O" # _pdbx_chem_comp_identifier.comp_id OD2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[6-(4-methylsulfanylphenyl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OD2 "Create component" 2020-02-27 PDBE OD2 "Initial release" 2020-03-11 RCSB ##