data_OD4
#
_chem_comp.id OD4
_chem_comp.name "4-{5-[(3-aminopropyl)carbamoyl]thiophen-2-yl}-1-benzothiophene-2-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H16 N2 O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-06-20
_chem_comp.pdbx_modified_date 2019-12-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 360.451
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OD4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6PDN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OD4 C1 C1 C 0 1 N N N 85.544 87.059 -4.314 3.317 -1.342 0.693 C1 OD4 1
OD4 C2 C2 C 0 1 Y N N 86.982 86.817 -4.075 1.890 -1.659 0.592 C2 OD4 2
OD4 C3 C3 C 0 1 Y N N 89.415 86.658 -4.390 -0.575 -1.840 0.143 C3 OD4 3
OD4 C4 C4 C 0 1 Y N N 89.027 86.741 -3.083 -0.075 -2.796 0.983 C4 OD4 4
OD4 C5 C5 C 0 1 Y N N 87.659 86.539 -2.927 1.267 -2.697 1.228 C5 OD4 5
OD4 C6 C6 C 0 1 Y N N 90.764 86.422 -4.910 -1.984 -1.731 -0.275 C6 OD4 6
OD4 C10 C7 C 0 1 Y N N 93.123 85.940 -4.581 -4.002 -0.410 -0.577 C10 OD4 7
OD4 C11 C8 C 0 1 Y N N 91.839 86.156 -4.037 -2.664 -0.479 -0.172 C11 OD4 8
OD4 C12 C9 C 0 1 Y N N 93.132 85.969 -2.097 -3.051 1.763 0.275 C12 OD4 9
OD4 C13 C10 C 0 1 Y N N 91.865 86.049 -2.589 -2.176 0.748 0.294 C13 OD4 10
OD4 C14 C11 C 0 1 N N N 93.561 86.093 -0.692 -2.753 3.131 0.716 C14 OD4 11
OD4 C15 C12 C 0 1 N N N 83.249 86.759 -3.459 5.250 0.026 0.120 C15 OD4 12
OD4 C16 C13 C 0 1 N N N 82.512 85.553 -2.915 5.561 1.256 -0.735 C16 OD4 13
OD4 C17 C14 C 0 1 N N N 81.141 85.367 -3.504 7.051 1.587 -0.630 C17 OD4 14
OD4 N1 N1 N 0 1 N N N 84.697 86.600 -3.377 3.823 -0.291 0.019 N1 OD4 15
OD4 O1 O1 O 0 1 N N N 85.202 87.666 -5.329 4.044 -2.025 1.391 O1 OD4 16
OD4 S1 S1 S 0 1 Y N N 88.057 86.920 -5.425 0.718 -0.759 -0.360 S1 OD4 17
OD4 C7 C15 C 0 1 Y N N 91.013 86.477 -6.266 -2.647 -2.841 -0.772 C7 OD4 18
OD4 C8 C16 C 0 1 Y N N 92.277 86.266 -6.785 -3.971 -2.748 -1.167 C8 OD4 19
OD4 C9 C17 C 0 1 Y N N 93.345 86.000 -5.961 -4.643 -1.551 -1.070 C9 OD4 20
OD4 S2 S2 S 0 1 Y N N 94.305 85.639 -3.349 -4.601 1.230 -0.350 S2 OD4 21
OD4 O2 O2 O 0 1 N N N 94.718 85.799 -0.417 -1.645 3.407 1.135 O2 OD4 22
OD4 O3 O3 O 0 1 N N N 92.730 86.473 0.109 -3.707 4.081 0.656 O3 OD4 23
OD4 N2 N2 N 0 1 N N N 81.150 84.427 -4.629 7.350 2.767 -1.451 N2 OD4 24
OD4 H3 H3 H 0 1 N N N 89.704 86.940 -2.265 -0.691 -3.568 1.418 H3 OD4 25
OD4 H5 H5 H 0 1 N N N 87.194 86.204 -2.012 1.793 -3.385 1.873 H5 OD4 26
OD4 H8 H8 H 0 1 N N N 90.979 86.035 -1.972 -1.162 0.868 0.645 H8 OD4 27
OD4 H10 H10 H 0 1 N N N 82.956 87.646 -2.878 5.836 -0.821 -0.234 H10 OD4 28
OD4 H11 H11 H 0 1 N N N 82.967 86.902 -4.513 5.503 0.234 1.160 H11 OD4 29
OD4 H12 H12 H 0 1 N N N 82.409 85.671 -1.826 5.308 1.048 -1.775 H12 OD4 30
OD4 H13 H13 H 0 1 N N N 83.108 84.654 -3.132 4.974 2.103 -0.381 H13 OD4 31
OD4 H14 H14 H 0 1 N N N 80.771 86.341 -3.858 7.304 1.794 0.410 H14 OD4 32
OD4 H15 H15 H 0 1 N N N 80.469 84.981 -2.724 7.637 0.739 -0.984 H15 OD4 33
OD4 H16 H16 H 0 1 N N N 85.078 86.126 -2.584 3.243 0.256 -0.533 H16 OD4 34
OD4 H17 H17 H 0 1 N N N 90.198 86.691 -6.941 -2.128 -3.785 -0.852 H17 OD4 35
OD4 H18 H18 H 0 1 N N N 92.428 86.311 -7.854 -4.479 -3.619 -1.553 H18 OD4 36
OD4 H19 H19 H 0 1 N N N 94.332 85.841 -6.369 -5.676 -1.491 -1.382 H19 OD4 37
OD4 H20 H20 H 0 1 N N N 93.117 86.506 0.976 -3.464 4.967 0.957 H20 OD4 38
OD4 H21 H21 H 0 1 N N N 80.223 84.331 -4.991 6.771 3.550 -1.184 H21 OD4 39
OD4 H22 H22 H 0 1 N N N 81.754 84.772 -5.347 8.328 3.007 -1.398 H22 OD4 40
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OD4 C8 C7 DOUB Y N 1
OD4 C8 C9 SING Y N 2
OD4 C7 C6 SING Y N 3
OD4 C9 C10 DOUB Y N 4
OD4 S1 C3 SING Y N 5
OD4 S1 C2 SING Y N 6
OD4 O1 C1 DOUB N N 7
OD4 C6 C3 SING N N 8
OD4 C6 C11 DOUB Y N 9
OD4 N2 C17 SING N N 10
OD4 C10 C11 SING Y N 11
OD4 C10 S2 SING Y N 12
OD4 C3 C4 DOUB Y N 13
OD4 C1 C2 SING N N 14
OD4 C1 N1 SING N N 15
OD4 C2 C5 DOUB Y N 16
OD4 C11 C13 SING Y N 17
OD4 C17 C16 SING N N 18
OD4 C15 N1 SING N N 19
OD4 C15 C16 SING N N 20
OD4 S2 C12 SING Y N 21
OD4 C4 C5 SING Y N 22
OD4 C13 C12 DOUB Y N 23
OD4 C12 C14 SING N N 24
OD4 C14 O2 DOUB N N 25
OD4 C14 O3 SING N N 26
OD4 C4 H3 SING N N 27
OD4 C5 H5 SING N N 28
OD4 C13 H8 SING N N 29
OD4 C15 H10 SING N N 30
OD4 C15 H11 SING N N 31
OD4 C16 H12 SING N N 32
OD4 C16 H13 SING N N 33
OD4 C17 H14 SING N N 34
OD4 C17 H15 SING N N 35
OD4 N1 H16 SING N N 36
OD4 C7 H17 SING N N 37
OD4 C8 H18 SING N N 38
OD4 C9 H19 SING N N 39
OD4 O3 H20 SING N N 40
OD4 N2 H21 SING N N 41
OD4 N2 H22 SING N N 42
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OD4 SMILES ACDLabs 12.01 "C(c3ccc(c2c1c(sc(C(=O)O)c1)ccc2)s3)(NCCCN)=O"
OD4 InChI InChI 1.03 "InChI=1S/C17H16N2O3S2/c18-7-2-8-19-16(20)14-6-5-13(23-14)10-3-1-4-12-11(10)9-15(24-12)17(21)22/h1,3-6,9H,2,7-8,18H2,(H,19,20)(H,21,22)"
OD4 InChIKey InChI 1.03 PPVOHCUEWCXUEU-UHFFFAOYSA-N
OD4 SMILES_CANONICAL CACTVS 3.385 "NCCCNC(=O)c1sc(cc1)c2cccc3sc(cc23)C(O)=O"
OD4 SMILES CACTVS 3.385 "NCCCNC(=O)c1sc(cc1)c2cccc3sc(cc23)C(O)=O"
OD4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2cc(sc2c1)C(=O)O)c3ccc(s3)C(=O)NCCCN"
OD4 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2cc(sc2c1)C(=O)O)c3ccc(s3)C(=O)NCCCN"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OD4 "SYSTEMATIC NAME" ACDLabs 12.01 "4-{5-[(3-aminopropyl)carbamoyl]thiophen-2-yl}-1-benzothiophene-2-carboxylic acid"
OD4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[5-(3-azanylpropylcarbamoyl)thiophen-2-yl]-1-benzothiophene-2-carboxylic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OD4 "Create component" 2019-06-20 RCSB
OD4 "Modify formula" 2019-06-20 RCSB
OD4 "Initial release" 2019-07-24 RCSB
OD4 "Other modification" 2019-12-11 RCSB
##