data_ODF # _chem_comp.id ODF _chem_comp.name "5-oxidanyl-1~{H}-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C4 H4 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-Hydroxy-2,4(1H,3H)-pyrimidinedion" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-31 _chem_comp.pdbx_modified_date 2023-07-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 128.086 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ODF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8I6B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ODF O3 O1 O 0 1 N N N 28.181 -11.485 43.286 -2.739 0.240 -0.002 O3 ODF 1 ODF C4 C1 C 0 1 N N N 27.386 -10.856 42.681 -1.542 0.025 -0.002 C4 ODF 2 ODF N1 N1 N 0 1 N N N 27.723 -9.706 41.998 -0.683 1.061 0.000 N1 ODF 3 ODF C2 C2 C 0 1 N N N 26.852 -8.887 41.332 0.647 0.842 0.000 C2 ODF 4 ODF O2 O2 O 0 1 N N N 27.193 -7.847 40.813 1.424 1.780 0.002 O2 ODF 5 ODF N2 N2 N 0 1 N N N 26.105 -11.317 42.526 -1.097 -1.245 0.002 N2 ODF 6 ODF C3 C3 C 0 1 N N N 25.084 -10.535 41.816 0.249 -1.513 0.002 C3 ODF 7 ODF C1 C4 C 0 1 N N N 25.501 -9.409 41.192 1.134 -0.492 -0.002 C1 ODF 8 ODF O1 O3 O 0 1 N N N 24.592 -8.626 40.550 2.474 -0.738 -0.002 O1 ODF 9 ODF H1 H1 H 0 1 N N N 28.689 -9.448 41.989 -1.023 1.969 0.002 H1 ODF 10 ODF H2 H2 H 0 1 N N N 24.049 -10.844 41.793 0.599 -2.535 0.006 H2 ODF 11 ODF H4 H4 H 0 1 N N N 25.016 -7.832 40.245 2.701 -1.678 -0.003 H4 ODF 12 ODF H5 H5 H 0 1 N N N 25.859 -12.209 42.906 -1.734 -1.977 0.004 H5 ODF 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ODF O1 C1 SING N N 1 ODF O2 C2 DOUB N N 2 ODF C1 C2 SING N N 3 ODF C1 C3 DOUB N N 4 ODF C2 N1 SING N N 5 ODF C3 N2 SING N N 6 ODF N1 C4 SING N N 7 ODF N2 C4 SING N N 8 ODF C4 O3 DOUB N N 9 ODF N1 H1 SING N N 10 ODF C3 H2 SING N N 11 ODF O1 H4 SING N N 12 ODF N2 H5 SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ODF InChI InChI 1.06 "InChI=1S/C4H4N2O3/c7-2-1-5-4(9)6-3(2)8/h1,7H,(H2,5,6,8,9)" ODF InChIKey InChI 1.06 OFJNVANOCZHTMW-UHFFFAOYSA-N ODF SMILES_CANONICAL CACTVS 3.385 "OC1=CNC(=O)NC1=O" ODF SMILES CACTVS 3.385 "OC1=CNC(=O)NC1=O" ODF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1)O" ODF SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1)O" # _pdbx_chem_comp_identifier.comp_id ODF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-oxidanyl-1~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ODF "Create component" 2023-01-31 PDBJ ODF "Modify descriptor" 2023-03-07 PDBJ ODF "Initial release" 2023-07-12 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ODF _pdbx_chem_comp_synonyms.name "5-Hydroxy-2,4(1H,3H)-pyrimidinedion" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #