data_ODU # _chem_comp.id ODU _chem_comp.name "tetranitro-nitroso-oxidanyl-ruthenium(2-)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAI _chem_comp.formula "H N5 O10 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms hydroxy-tetranitro-nitrosyl-ruthenate _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2022-09-05 _chem_comp.pdbx_modified_date 2023-02-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.105 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ODU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AX1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ODU N12 N1 N 0 1 N N N -25.191 -18.879 31.155 0.268 0.220 -1.889 N12 ODU 1 ODU N03 N2 N 1 1 N N N -26.590 -18.031 32.977 -0.923 1.856 0.162 N03 ODU 2 ODU N06 N3 N 1 1 N N N -23.936 -19.773 33.543 1.750 0.835 0.505 N06 ODU 3 ODU N09 N4 N 1 1 N N N -27.494 -20.507 31.681 -1.889 -0.822 -0.286 N09 ODU 4 ODU N14 N5 N 1 1 N N N -24.904 -21.463 31.483 0.785 -1.843 0.056 N14 ODU 5 ODU O01 O1 O 0 1 N N N -26.332 -20.629 34.122 -0.374 -0.186 1.914 O01 ODU 6 ODU O04 O2 O 0 1 N N N -26.927 -17.145 32.328 -0.389 2.790 -0.408 O04 ODU 7 ODU O05 O3 O -1 1 N N N -26.668 -17.908 34.141 -1.968 2.028 0.765 O05 ODU 8 ODU O07 O4 O -1 1 N N N -22.940 -19.651 32.931 2.105 1.838 -0.089 O07 ODU 9 ODU O08 O5 O 0 1 N N N -24.035 -19.717 34.727 2.483 0.328 1.335 O08 ODU 10 ODU O10 O6 O 0 1 N N N -28.067 -21.384 32.137 -2.621 -0.315 -1.116 O10 ODU 11 ODU O11 O7 O -1 1 N N N -27.936 -19.830 30.813 -2.243 -1.825 0.308 O11 ODU 12 ODU O13 O8 O 0 1 N N N -25.075 -18.361 30.243 1.347 -0.090 -2.361 O13 ODU 13 ODU O15 O9 O 0 1 N N N -24.361 -21.582 30.497 0.251 -2.777 0.627 O15 ODU 14 ODU O16 O10 O -1 1 N N N -24.960 -22.433 32.127 1.829 -2.014 -0.546 O16 ODU 15 ODU RU1 RU1 RU -2 0 N N N -25.705 -19.822 32.448 -0.069 0.007 0.109 RU1 ODU 16 ODU H1 H1 H 0 1 N N N -25.671 -20.518 34.795 0.380 -0.540 2.405 H1 ODU 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ODU O13 N12 DOUB N N 1 ODU O15 N14 DOUB N N 2 ODU O11 N09 SING N N 3 ODU N12 RU1 SING N N 4 ODU N14 O16 SING N N 5 ODU N14 RU1 SING N N 6 ODU N09 O10 DOUB N N 7 ODU N09 RU1 SING N N 8 ODU O04 N03 DOUB N N 9 ODU RU1 N03 SING N N 10 ODU RU1 N06 SING N N 11 ODU RU1 O01 SING N N 12 ODU O07 N06 SING N N 13 ODU N03 O05 SING N N 14 ODU N06 O08 DOUB N N 15 ODU O01 H1 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ODU InChI InChI 1.06 InChI=1S/4NO2.NO.H2O.Ru/c4*2-1-3;1-2;;/h;;;;;1H2;/q;;;;-1;;/p-1 ODU InChIKey InChI 1.06 YJGPUQROXYARAA-UHFFFAOYSA-M ODU SMILES_CANONICAL CACTVS 3.385 "O[Ru--](N=O)([N+]([O-])=O)([N+]([O-])=O)([N+]([O-])=O)[N+]([O-])=O" ODU SMILES CACTVS 3.385 "O[Ru--](N=O)([N+]([O-])=O)([N+]([O-])=O)([N+]([O-])=O)[N+]([O-])=O" ODU SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "N(=O)[Ru-2]([N+](=O)[O-])([N+](=O)[O-])([N+](=O)[O-])([N+](=O)[O-])O" ODU SMILES "OpenEye OEToolkits" 3.1.0.0 "N(=O)[Ru-2]([N+](=O)[O-])([N+](=O)[O-])([N+](=O)[O-])([N+](=O)[O-])O" # _pdbx_chem_comp_identifier.comp_id ODU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "tetranitro-nitroso-oxidanyl-ruthenium(2-)" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ODU _pdbx_chem_comp_synonyms.name hydroxy-tetranitro-nitrosyl-ruthenate _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ODU "Create component" 2022-09-05 PDBE ODU "Initial release" 2023-03-01 RCSB #