data_ODX # _chem_comp.id ODX _chem_comp.name "2-(3-chloro-5-{[(1S,2S)-2-hydroxycyclopentyl]amino}phenyl)-N-(4-methylpyridin-3-yl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H22 Cl N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-17 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 359.850 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ODX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GFK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ODX N1 N1 N 0 1 N N N N N N 7.246 -0.807 20.618 3.680 0.173 1.057 N1 ODX 1 ODX C4 C1 C 0 1 Y N N N N N 6.982 -0.091 18.293 4.061 -1.499 -0.652 C4 ODX 2 ODX C5 C2 C 0 1 Y N N N N N 6.569 -0.070 19.625 4.553 -0.554 0.239 C5 ODX 3 ODX C6 C3 C 0 1 N N N N N N 8.447 -0.446 21.112 2.399 0.355 0.681 C6 ODX 4 ODX C7 C4 C 0 1 N N N N N N 9.105 -1.496 21.983 1.427 1.026 1.617 C7 ODX 5 ODX C8 C5 C 0 1 Y N N N N N 9.861 -0.840 23.111 0.072 1.106 0.962 C8 ODX 6 ODX C10 C6 C 0 1 Y N N N N N 11.821 0.249 23.938 -1.501 2.283 -0.412 C10 ODX 7 ODX C13 C7 C 0 1 N N S N N N 7.906 -0.010 26.920 -4.324 -0.802 0.058 C13 ODX 8 ODX C15 C8 C 0 1 N N N N N N 6.275 0.221 28.729 -5.222 -2.550 -1.439 C15 ODX 9 ODX C17 C9 C 0 1 N N S N N N 6.858 1.050 26.529 -5.333 -1.687 0.819 C17 ODX 10 ODX CL CL1 CL 0 0 N N N N N N 13.482 0.709 23.710 -1.915 3.669 -1.372 CL ODX 11 ODX C9 C10 C 0 1 Y N N N N N 11.172 -0.423 22.924 -0.258 2.206 0.192 C9 ODX 12 ODX C11 C11 C 0 1 Y N N N N N 11.205 0.530 25.142 -2.416 1.260 -0.246 C11 ODX 13 ODX C12 C12 C 0 1 Y N N N N N 9.896 0.099 25.340 -2.084 0.152 0.522 C12 ODX 14 ODX N2 N2 N 0 1 N N N N N N 9.262 0.372 26.550 -3.005 -0.884 0.692 N2 ODX 15 ODX O1 O1 O 0 1 N N N N N N 6.506 0.981 25.147 -6.111 -0.897 1.720 O1 ODX 16 ODX C16 C13 C 0 1 N N N N N N 5.671 0.690 27.411 -6.230 -2.283 -0.294 C16 ODX 17 ODX C14 C14 C 0 1 N N N N N N 7.730 -0.152 28.439 -4.254 -1.350 -1.378 C14 ODX 18 ODX C18 C15 C 0 1 Y N N N N N 9.236 -0.589 24.326 -0.835 0.078 1.127 C18 ODX 19 ODX O O2 O 0 1 N N N N N N 8.983 0.637 20.877 2.028 -0.021 -0.411 O ODX 20 ODX C1 C16 C 0 1 Y N N N N N 5.477 0.736 19.980 5.928 -0.340 0.306 C1 ODX 21 ODX C C17 C 0 1 N N N N N N 5.021 0.877 21.409 6.505 0.675 1.259 C ODX 22 ODX N N3 N 0 1 Y N N N N N 6.388 0.613 17.327 4.880 -2.188 -1.421 N ODX 23 ODX C3 C18 C 0 1 Y N N N N N 5.333 1.362 17.675 6.187 -2.013 -1.377 C3 ODX 24 ODX C2 C19 C 0 1 Y N N N N N 4.853 1.450 18.965 6.751 -1.083 -0.523 C2 ODX 25 ODX H1 H1 H 0 1 N N N N N N 6.815 -1.637 20.973 3.997 0.542 1.896 H1 ODX 26 ODX H2 H2 H 0 1 N N N N N N 7.827 -0.710 18.029 2.997 -1.673 -0.712 H2 ODX 27 ODX H3 H3 H 0 1 N N N N N N 8.332 -2.158 22.401 1.352 0.448 2.538 H3 ODX 28 ODX H4 H4 H 0 1 N N N N N N 9.804 -2.088 21.373 1.780 2.031 1.847 H4 ODX 29 ODX H5 H5 H 0 1 N N N N N N 7.641 -0.964 26.441 -4.669 0.232 0.047 H5 ODX 30 ODX H6 H6 H 0 1 N N N N N N 6.232 1.029 29.474 -4.686 -3.483 -1.266 H6 ODX 31 ODX H7 H7 H 0 1 N N N N N N 5.727 -0.655 29.106 -5.736 -2.579 -2.401 H7 ODX 32 ODX H8 H8 H 0 1 N N N N N N 7.230 2.051 26.795 -4.814 -2.481 1.357 H8 ODX 33 ODX H9 H9 H 0 1 N N N N N N 11.679 -0.623 21.992 0.455 3.006 0.062 H9 ODX 34 ODX H10 H10 H 0 1 N N N N N N 11.729 1.073 25.915 -3.387 1.322 -0.714 H10 ODX 35 ODX H11 H11 H 0 1 N N N N N N 9.848 -0.037 27.249 -2.773 -1.658 1.229 H11 ODX 36 ODX H12 H12 H 0 1 N N N N N N 5.860 1.649 24.951 -6.762 -1.403 2.225 H12 ODX 37 ODX H13 H13 H 0 1 N N N N N N 5.030 1.570 27.572 -6.988 -1.564 -0.605 H13 ODX 38 ODX H14 H14 H 0 1 N N N N N N 5.079 -0.115 26.951 -6.692 -3.213 0.038 H14 ODX 39 ODX H15 H15 H 0 1 N N N N N N 7.929 -1.187 28.752 -4.564 -0.583 -2.086 H15 ODX 40 ODX H16 H16 H 0 1 N N N N N N 8.412 0.529 28.969 -3.239 -1.678 -1.603 H16 ODX 41 ODX H17 H17 H 0 1 N N N N N N 8.225 -0.932 24.486 -0.574 -0.783 1.724 H17 ODX 42 ODX H18 H18 H 0 1 N N N N N N 4.256 0.117 21.627 6.722 0.195 2.213 H18 ODX 43 ODX H19 H19 H 0 1 N N N N N N 5.879 0.737 22.083 7.425 1.083 0.841 H19 ODX 44 ODX H20 H20 H 0 1 N N N N N N 4.595 1.880 21.561 5.787 1.480 1.411 H20 ODX 45 ODX H21 H21 H 0 1 N N N N N N 4.831 1.927 16.904 6.824 -2.598 -2.023 H21 ODX 46 ODX H22 H22 H 0 1 N N N N N N 3.997 2.071 19.185 7.822 -0.947 -0.495 H22 ODX 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ODX N C3 DOUB Y N 1 ODX N C4 SING Y N 2 ODX C3 C2 SING Y N 3 ODX C4 C5 DOUB Y N 4 ODX C2 C1 DOUB Y N 5 ODX C5 C1 SING Y N 6 ODX C5 N1 SING N N 7 ODX C1 C SING N N 8 ODX N1 C6 SING N N 9 ODX O C6 DOUB N N 10 ODX C6 C7 SING N N 11 ODX C7 C8 SING N N 12 ODX C9 C8 DOUB Y N 13 ODX C9 C10 SING Y N 14 ODX C8 C18 SING Y N 15 ODX CL C10 SING N N 16 ODX C10 C11 DOUB Y N 17 ODX C18 C12 DOUB Y N 18 ODX C11 C12 SING Y N 19 ODX O1 C17 SING N N 20 ODX C12 N2 SING N N 21 ODX C17 C13 SING N N 22 ODX C17 C16 SING N N 23 ODX N2 C13 SING N N 24 ODX C13 C14 SING N N 25 ODX C16 C15 SING N N 26 ODX C14 C15 SING N N 27 ODX N1 H1 SING N N 28 ODX C4 H2 SING N N 29 ODX C7 H3 SING N N 30 ODX C7 H4 SING N N 31 ODX C13 H5 SING N N 32 ODX C15 H6 SING N N 33 ODX C15 H7 SING N N 34 ODX C17 H8 SING N N 35 ODX C9 H9 SING N N 36 ODX C11 H10 SING N N 37 ODX N2 H11 SING N N 38 ODX O1 H12 SING N N 39 ODX C16 H13 SING N N 40 ODX C16 H14 SING N N 41 ODX C14 H15 SING N N 42 ODX C14 H16 SING N N 43 ODX C18 H17 SING N N 44 ODX C H18 SING N N 45 ODX C H19 SING N N 46 ODX C H20 SING N N 47 ODX C3 H21 SING N N 48 ODX C2 H22 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ODX SMILES ACDLabs 12.01 "O=C(Nc1cnccc1C)Cc1cc(NC2CCCC2O)cc(Cl)c1" ODX InChI InChI 1.06 "InChI=1S/C19H22ClN3O2/c1-12-5-6-21-11-17(12)23-19(25)9-13-7-14(20)10-15(8-13)22-16-3-2-4-18(16)24/h5-8,10-11,16,18,22,24H,2-4,9H2,1H3,(H,23,25)/t16-,18-/m0/s1" ODX InChIKey InChI 1.06 SXRYZSBUMPNSOT-WMZOPIPTSA-N ODX SMILES_CANONICAL CACTVS 3.385 "Cc1ccncc1NC(=O)Cc2cc(Cl)cc(N[C@H]3CCC[C@@H]3O)c2" ODX SMILES CACTVS 3.385 "Cc1ccncc1NC(=O)Cc2cc(Cl)cc(N[CH]3CCC[CH]3O)c2" ODX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccncc1NC(=O)Cc2cc(cc(c2)Cl)N[C@H]3CCC[C@@H]3O" ODX SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccncc1NC(=O)Cc2cc(cc(c2)Cl)NC3CCCC3O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ODX "SYSTEMATIC NAME" ACDLabs 12.01 "2-(3-chloro-5-{[(1S,2S)-2-hydroxycyclopentyl]amino}phenyl)-N-(4-methylpyridin-3-yl)acetamide" ODX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-chloranyl-5-[[(1~{S},2~{S})-2-oxidanylcyclopentyl]amino]phenyl]-~{N}-(4-methylpyridin-3-yl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ODX "Create component" 2023-08-17 RCSB ODX "Initial release" 2023-11-08 RCSB #