data_OF4
#
_chem_comp.id OF4
_chem_comp.name "2-[({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)methyl]benzoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H19 N5 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-06-24
_chem_comp.pdbx_modified_date 2019-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 417.417
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OF4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6PFA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OF4 C10 C1 C 0 1 Y N N -34.346 -18.589 89.158 0.283 -1.158 -0.842 C10 OF4 1
OF4 C11 C2 C 0 1 Y N N -34.502 -17.562 88.193 0.754 -2.124 0.049 C11 OF4 2
OF4 C21 C3 C 0 1 Y N N -30.517 -19.721 85.870 5.907 -0.216 -1.332 C21 OF4 3
OF4 C22 C4 C 0 1 N N N -28.210 -16.853 87.050 4.147 1.543 1.480 C22 OF4 4
OF4 C1 C5 C 0 1 Y N N -40.698 -17.825 89.283 -5.193 0.442 0.762 C1 OF4 5
OF4 C12 C6 C 0 1 Y N N -35.648 -16.741 88.250 -0.115 -3.104 0.531 C12 OF4 6
OF4 C13 C7 C 0 1 Y N N -36.620 -16.929 89.248 -1.433 -3.113 0.124 C13 OF4 7
OF4 C14 C8 C 0 1 N N N -33.502 -17.306 87.100 2.168 -2.108 0.481 C14 OF4 8
OF4 C15 C9 C 0 1 N N N -31.172 -17.348 86.352 4.406 -1.145 0.441 C15 OF4 9
OF4 C16 C10 C 0 1 Y N N -30.103 -18.434 86.280 5.121 0.006 -0.220 C16 OF4 10
OF4 C17 C11 C 0 1 Y N N -28.733 -18.201 86.609 4.988 1.298 0.290 C17 OF4 11
OF4 C18 C12 C 0 1 Y N N -27.821 -19.283 86.504 5.654 2.358 -0.328 C18 OF4 12
OF4 C19 C13 C 0 1 Y N N -28.249 -20.561 86.094 6.437 2.123 -1.439 C19 OF4 13
OF4 C2 C14 C 0 1 Y N N -39.493 -18.438 89.505 -4.359 0.113 -0.316 C2 OF4 14
OF4 C20 C15 C 0 1 Y N N -29.599 -20.781 85.775 6.569 0.838 -1.936 C20 OF4 15
OF4 C3 C16 C 0 1 N N N -39.117 -19.533 88.580 -3.912 1.140 -1.176 C3 OF4 16
OF4 C4 C17 C 0 1 N N N -41.226 -19.106 87.486 -5.115 2.670 0.147 C4 OF4 17
OF4 C5 C18 C 0 1 Y N N -38.886 -17.807 90.645 -4.159 -1.334 -0.254 C5 OF4 18
OF4 C6 C19 C 0 1 Y N N -39.759 -16.832 91.066 -4.851 -1.774 0.810 C6 OF4 19
OF4 C7 C20 C 0 1 N N N -37.547 -18.130 91.261 -3.335 -2.170 -1.199 C7 OF4 20
OF4 C8 C21 C 0 1 Y N N -36.468 -17.947 90.208 -1.894 -2.153 -0.759 C8 OF4 21
OF4 C9 C22 C 0 1 Y N N -35.326 -18.778 90.158 -1.038 -1.179 -1.241 C9 OF4 22
OF4 N1 N1 N 0 1 N N N -41.600 -18.136 88.276 -5.541 1.723 0.952 N1 OF4 23
OF4 N2 N2 N 0 1 N N N -40.015 -19.806 87.613 -4.310 2.407 -0.921 N2 OF4 24
OF4 N3 N3 N 0 1 Y N N -40.863 -16.848 90.234 -5.474 -0.717 1.424 N3 OF4 25
OF4 N4 N4 N 0 1 N N N -41.972 -19.574 86.426 -5.504 3.965 0.382 N4 OF4 26
OF4 N5 N5 N 0 1 N N N -32.213 -17.575 87.348 3.005 -1.160 0.014 N5 OF4 27
OF4 O1 O1 O 0 1 N N N -38.062 -20.157 88.677 -3.186 0.891 -2.123 O1 OF4 28
OF4 O2 O2 O 0 1 N N N -33.876 -16.863 86.016 2.576 -2.950 1.256 O2 OF4 29
OF4 O3 O3 O 0 1 N N N -28.713 -16.417 88.243 4.021 2.791 1.970 O3 OF4 30
OF4 O4 O4 O 0 1 N N N -27.394 -16.203 86.398 3.569 0.619 2.016 O4 OF4 31
OF4 H1 H1 H 0 1 N N N -33.476 -19.228 89.129 0.949 -0.395 -1.215 H1 OF4 32
OF4 H2 H2 H 0 1 N N N -31.555 -19.893 85.626 6.011 -1.215 -1.728 H2 OF4 33
OF4 H3 H3 H 0 1 N N N -35.780 -15.958 87.518 0.244 -3.854 1.220 H3 OF4 34
OF4 H4 H4 H 0 1 N N N -37.489 -16.288 89.278 -2.106 -3.871 0.496 H4 OF4 35
OF4 H5 H5 H 0 1 N N N -30.676 -16.395 86.588 4.884 -2.082 0.154 H5 OF4 36
OF4 H6 H6 H 0 1 N N N -31.653 -17.276 85.365 4.455 -1.028 1.524 H6 OF4 37
OF4 H7 H7 H 0 1 N N N -26.780 -19.124 86.743 5.555 3.361 0.062 H7 OF4 38
OF4 H8 H8 H 0 1 N N N -27.539 -21.372 86.025 6.952 2.942 -1.918 H8 OF4 39
OF4 H9 H9 H 0 1 N N N -29.930 -21.759 85.458 7.184 0.659 -2.806 H9 OF4 40
OF4 H10 H10 H 0 1 N N N -39.608 -16.167 91.904 -4.909 -2.803 1.132 H10 OF4 41
OF4 H11 H11 H 0 1 N N N -37.545 -19.171 91.616 -3.705 -3.195 -1.194 H11 OF4 42
OF4 H12 H12 H 0 1 N N N -37.356 -17.454 92.107 -3.412 -1.760 -2.207 H12 OF4 43
OF4 H13 H13 H 0 1 N N N -35.202 -19.563 90.889 -1.405 -0.430 -1.927 H13 OF4 44
OF4 H14 H14 H 0 1 N N N -39.811 -20.536 86.960 -4.014 3.131 -1.494 H14 OF4 45
OF4 H15 H15 H 0 1 N N N -41.656 -16.244 90.312 -6.032 -0.784 2.215 H15 OF4 46
OF4 H16 H16 H 0 1 N N N -42.862 -19.166 86.222 -5.206 4.675 -0.207 H16 OF4 47
OF4 H17 H17 H 0 1 N N N -41.624 -20.322 85.861 -6.077 4.170 1.138 H17 OF4 48
OF4 H18 H18 H 0 1 N N N -31.957 -17.942 88.242 2.680 -0.488 -0.606 H18 OF4 49
OF4 H19 H19 H 0 1 N N N -28.336 -15.572 88.456 3.460 2.902 2.750 H19 OF4 50
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OF4 C20 C21 DOUB Y N 1
OF4 C20 C19 SING Y N 2
OF4 C21 C16 SING Y N 3
OF4 O2 C14 DOUB N N 4
OF4 C19 C18 DOUB Y N 5
OF4 C16 C15 SING N N 6
OF4 C16 C17 DOUB Y N 7
OF4 C15 N5 SING N N 8
OF4 O4 C22 DOUB N N 9
OF4 N4 C4 SING N N 10
OF4 C18 C17 SING Y N 11
OF4 C17 C22 SING N N 12
OF4 C22 O3 SING N N 13
OF4 C14 N5 SING N N 14
OF4 C14 C11 SING N N 15
OF4 C4 N2 SING N N 16
OF4 C4 N1 DOUB N N 17
OF4 N2 C3 SING N N 18
OF4 C11 C12 DOUB Y N 19
OF4 C11 C10 SING Y N 20
OF4 C12 C13 SING Y N 21
OF4 N1 C1 SING N N 22
OF4 C3 O1 DOUB N N 23
OF4 C3 C2 SING N N 24
OF4 C10 C9 DOUB Y N 25
OF4 C13 C8 DOUB Y N 26
OF4 C1 C2 DOUB Y N 27
OF4 C1 N3 SING Y N 28
OF4 C2 C5 SING Y N 29
OF4 C9 C8 SING Y N 30
OF4 C8 C7 SING N N 31
OF4 N3 C6 SING Y N 32
OF4 C5 C6 DOUB Y N 33
OF4 C5 C7 SING N N 34
OF4 C10 H1 SING N N 35
OF4 C21 H2 SING N N 36
OF4 C12 H3 SING N N 37
OF4 C13 H4 SING N N 38
OF4 C15 H5 SING N N 39
OF4 C15 H6 SING N N 40
OF4 C18 H7 SING N N 41
OF4 C19 H8 SING N N 42
OF4 C20 H9 SING N N 43
OF4 C6 H10 SING N N 44
OF4 C7 H11 SING N N 45
OF4 C7 H12 SING N N 46
OF4 C9 H13 SING N N 47
OF4 N2 H14 SING N N 48
OF4 N3 H15 SING N N 49
OF4 N4 H16 SING N N 50
OF4 N4 H17 SING N N 51
OF4 N5 H18 SING N N 52
OF4 O3 H19 SING N N 53
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OF4 SMILES ACDLabs 12.01 "c1cc(ccc1C(NCc2ccccc2C(O)=O)=O)Cc3c4c(nc3)N=C(NC4=O)N"
OF4 InChI InChI 1.03 "InChI=1S/C22H19N5O4/c23-22-26-18-17(20(29)27-22)15(11-24-18)9-12-5-7-13(8-6-12)19(28)25-10-14-3-1-2-4-16(14)21(30)31/h1-8,11H,9-10H2,(H,25,28)(H,30,31)(H4,23,24,26,27,29)"
OF4 InChIKey InChI 1.03 BBGUOTHUKQSSGG-UHFFFAOYSA-N
OF4 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2[nH]cc(Cc3ccc(cc3)C(=O)NCc4ccccc4C(O)=O)c2C(=O)N1"
OF4 SMILES CACTVS 3.385 "NC1=Nc2[nH]cc(Cc3ccc(cc3)C(=O)NCc4ccccc4C(O)=O)c2C(=O)N1"
OF4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CNC(=O)c2ccc(cc2)Cc3c[nH]c4c3C(=O)NC(=N4)N)C(=O)O"
OF4 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CNC(=O)c2ccc(cc2)Cc3c[nH]c4c3C(=O)NC(=N4)N)C(=O)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OF4 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)methyl]benzoic acid"
OF4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[[4-[(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-5-yl)methyl]phenyl]carbonylamino]methyl]benzoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OF4 "Create component" 2019-06-24 RCSB
OF4 "Initial release" 2019-10-02 RCSB
##