data_OF9 # _chem_comp.id OF9 _chem_comp.name "(2~{R})-1-[4,4-bis(fluoranyl)cyclohexyl]carbonyl-4,4-bis(fluoranyl)-~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(pyridin-2-ylmethylamino)butan-2-yl]pyrrolidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H32 F4 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-31 _chem_comp.pdbx_modified_date 2023-08-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 564.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OF9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8I30 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OF9 C10 C1 C 0 1 N N N 23.055 1.663 0.773 0.035 -1.706 -2.339 C10 OF9 1 OF9 C13 C2 C 0 1 N N N 23.141 1.068 2.195 0.514 -0.305 -2.803 C13 OF9 2 OF9 C15 C3 C 0 1 N N N 25.059 2.411 3.234 0.721 1.023 -0.699 C15 OF9 3 OF9 C17 C4 C 0 1 N N R 26.532 4.435 3.287 2.750 2.088 0.129 C17 OF9 4 OF9 C20 C5 C 0 1 Y N N 24.079 6.469 3.068 0.463 4.403 -0.060 C20 OF9 5 OF9 C21 C6 C 0 1 Y N N 22.750 6.730 2.779 -0.792 4.810 0.352 C21 OF9 6 OF9 C22 C7 C 0 1 Y N N 22.248 6.459 1.516 -1.094 4.860 1.700 C22 OF9 7 OF9 C24 C8 C 0 1 Y N N 24.396 5.667 0.814 1.110 4.087 2.224 C24 OF9 8 OF9 C02 C9 C 0 1 N N N 29.711 1.185 -1.933 -6.197 -1.051 0.516 C02 OF9 9 OF9 C04 C10 C 0 1 N N N 28.651 2.278 -1.809 -5.315 -0.584 1.676 C04 OF9 10 OF9 C05 C11 C 0 1 N N N 27.846 2.140 -0.523 -4.198 0.313 1.138 C05 OF9 11 OF9 C06 C12 C 0 1 N N N 27.244 0.746 -0.338 -3.350 -0.473 0.137 C06 OF9 12 OF9 C07 C13 C 0 1 N N N 26.681 0.687 1.082 -2.250 0.411 -0.393 C07 OF9 13 OF9 C09 C14 C 0 1 N N N 24.281 1.616 0.191 -1.424 -1.410 -1.912 C09 OF9 14 OF9 C14 C15 C 0 1 N N R 24.681 1.119 2.500 -0.206 0.648 -1.826 C14 OF9 15 OF9 C18 C16 C 0 1 N N N 26.358 5.650 2.389 2.780 3.589 0.427 C18 OF9 16 OF9 C19 C17 C 0 1 Y N N 24.894 5.934 2.085 1.414 4.039 0.876 C19 OF9 17 OF9 C23 C18 C 0 1 Y N N 23.066 5.930 0.530 -0.142 4.501 2.636 C23 OF9 18 OF9 C25 C19 C 0 1 N N S 28.004 4.177 3.577 4.140 1.629 -0.317 C25 OF9 19 OF9 C27 C20 C 0 1 N N N 28.246 3.150 4.687 4.083 0.180 -0.727 C27 OF9 20 OF9 C29 C21 C 0 1 N N N 29.562 1.106 5.465 3.743 -2.177 -0.211 C29 OF9 21 OF9 C30 C22 C 0 1 Y N N 28.678 -0.053 5.934 3.409 -3.026 0.989 C30 OF9 22 OF9 C31 C23 C 0 1 Y N N 27.457 -0.326 5.355 2.096 -3.386 1.226 C31 OF9 23 OF9 C32 C24 C 0 1 Y N N 26.733 -1.404 5.862 1.799 -4.167 2.333 C32 OF9 24 OF9 C33 C25 C 0 1 Y N N 27.263 -2.150 6.913 2.839 -4.558 3.162 C33 OF9 25 OF9 C34 C26 C 0 1 Y N N 28.496 -1.809 7.449 4.127 -4.159 2.861 C34 OF9 26 OF9 C39 C27 C 0 1 N N N 28.270 -0.364 -0.509 -4.232 -0.940 -1.023 C39 OF9 27 OF9 C40 C28 C 0 1 N N N 29.109 -0.210 -1.777 -5.348 -1.838 -0.485 C40 OF9 28 OF9 F01 F1 F 0 1 N N N 30.653 1.391 -0.971 -6.758 0.061 -0.120 F01 OF9 29 OF9 F03 F2 F 0 1 N N N 30.316 1.264 -3.159 -7.218 -1.872 1.008 F03 OF9 30 OF9 F11 F3 F 0 1 N N N 22.180 0.922 0.039 0.073 -2.624 -3.395 F11 OF9 31 OF9 F12 F4 F 0 1 N N N 22.686 2.965 0.908 0.793 -2.161 -1.255 F12 OF9 32 OF9 N08 N1 N 0 1 N N N 25.311 1.095 1.325 -1.373 -0.072 -1.294 N08 OF9 33 OF9 N16 N2 N 0 1 N N N 26.089 3.233 2.628 1.782 1.820 -0.937 N16 OF9 34 OF9 N28 N3 N 0 1 N N N 29.198 2.077 4.420 3.798 -0.768 0.188 N28 OF9 35 OF9 N35 N4 N 0 1 Y N N 29.155 -0.782 6.945 4.373 -3.420 1.797 N35 OF9 36 OF9 O26 O1 O 0 1 N N N 28.611 3.690 2.417 4.570 2.421 -1.426 O26 OF9 37 OF9 O36 O2 O 0 1 N N N 27.672 3.230 5.744 4.292 -0.133 -1.880 O36 OF9 38 OF9 O37 O3 O 0 1 N N N 24.545 2.737 4.263 0.514 0.608 0.421 O37 OF9 39 OF9 O38 O4 O 0 1 N N N 27.352 0.327 1.991 -2.154 1.557 -0.007 O38 OF9 40 OF9 H1 H1 H 0 1 N N N 22.574 1.677 2.914 1.595 -0.215 -2.704 H1 OF9 41 OF9 H2 H2 H 0 1 N N N 22.767 0.034 2.215 0.203 -0.112 -3.830 H2 OF9 42 OF9 H3 H3 H 0 1 N N N 25.988 4.589 4.231 2.460 1.545 1.029 H3 OF9 43 OF9 H4 H4 H 0 1 N N N 24.476 6.681 4.050 0.700 4.365 -1.113 H4 OF9 44 OF9 H5 H5 H 0 1 N N N 22.104 7.145 3.539 -1.535 5.091 -0.379 H5 OF9 45 OF9 H6 H6 H 0 1 N N N 21.210 6.662 1.298 -2.075 5.178 2.022 H6 OF9 46 OF9 H7 H7 H 0 1 N N N 25.043 5.257 0.053 1.853 3.802 2.955 H7 OF9 47 OF9 H8 H8 H 0 1 N N N 29.148 3.259 -1.814 -5.919 -0.024 2.389 H8 OF9 48 OF9 H9 H9 H 0 1 N N N 27.966 2.209 -2.667 -4.878 -1.450 2.172 H9 OF9 49 OF9 H10 H10 H 0 1 N N N 28.509 2.351 0.329 -4.636 1.180 0.642 H10 OF9 50 OF9 H11 H11 H 0 1 N N N 27.028 2.875 -0.542 -3.570 0.646 1.964 H11 OF9 51 OF9 H12 H12 H 0 1 N N N 26.427 0.604 -1.060 -2.912 -1.339 0.633 H12 OF9 52 OF9 H13 H13 H 0 1 N N N 24.270 0.920 -0.661 -2.080 -1.401 -2.783 H13 OF9 53 OF9 H14 H14 H 0 1 N N N 24.575 2.617 -0.157 -1.765 -2.150 -1.187 H14 OF9 54 OF9 H15 H15 H 0 1 N N N 24.944 0.256 3.130 -0.530 1.545 -2.354 H15 OF9 55 OF9 H16 H16 H 0 1 N N N 26.888 5.470 1.442 3.506 3.789 1.215 H16 OF9 56 OF9 H17 H17 H 0 1 N N N 26.792 6.527 2.891 3.063 4.132 -0.475 H17 OF9 57 OF9 H18 H18 H 0 1 N N N 22.669 5.724 -0.453 -0.379 4.539 3.689 H18 OF9 58 OF9 H19 H19 H 0 1 N N N 28.470 5.127 3.878 4.843 1.746 0.507 H19 OF9 59 OF9 H20 H20 H 0 1 N N N 30.497 0.640 5.120 4.710 -2.480 -0.612 H20 OF9 60 OF9 H21 H21 H 0 1 N N N 29.762 1.705 6.365 2.976 -2.309 -0.974 H21 OF9 61 OF9 H22 H22 H 0 1 N N N 27.076 0.272 4.540 1.311 -3.063 0.559 H22 OF9 62 OF9 H23 H23 H 0 1 N N N 25.770 -1.659 5.444 0.782 -4.464 2.544 H23 OF9 63 OF9 H24 H24 H 0 1 N N N 26.715 -2.992 7.309 2.645 -5.166 4.033 H24 OF9 64 OF9 H25 H25 H 0 1 N N N 28.912 -2.377 8.268 4.943 -4.459 3.502 H25 OF9 65 OF9 H26 H26 H 0 1 N N N 27.741 -1.327 -0.554 -4.669 -0.074 -1.519 H26 OF9 66 OF9 H27 H27 H 0 1 N N N 28.944 -0.356 0.360 -3.627 -1.501 -1.736 H27 OF9 67 OF9 H28 H28 H 0 1 N N N 28.468 -0.414 -2.647 -4.911 -2.704 0.011 H28 OF9 68 OF9 H29 H29 H 0 1 N N N 29.928 -0.943 -1.745 -5.976 -2.171 -1.311 H29 OF9 69 OF9 H30 H30 H 0 1 N N N 26.492 2.965 1.753 1.904 2.217 -1.814 H30 OF9 70 OF9 H31 H31 H 0 1 N N N 29.610 2.000 3.512 3.631 -0.518 1.110 H31 OF9 71 OF9 H32 H32 H 0 1 N N N 29.531 3.525 2.586 3.990 2.366 -2.197 H32 OF9 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OF9 F03 C02 SING N N 1 OF9 C02 C04 SING N N 2 OF9 C02 C40 SING N N 3 OF9 C02 F01 SING N N 4 OF9 C04 C05 SING N N 5 OF9 C40 C39 SING N N 6 OF9 C05 C06 SING N N 7 OF9 C39 C06 SING N N 8 OF9 C06 C07 SING N N 9 OF9 F11 C10 SING N N 10 OF9 C09 C10 SING N N 11 OF9 C09 N08 SING N N 12 OF9 C23 C24 DOUB Y N 13 OF9 C23 C22 SING Y N 14 OF9 C10 F12 SING N N 15 OF9 C10 C13 SING N N 16 OF9 C24 C19 SING Y N 17 OF9 C07 N08 SING N N 18 OF9 C07 O38 DOUB N N 19 OF9 N08 C14 SING N N 20 OF9 C22 C21 DOUB Y N 21 OF9 C19 C18 SING N N 22 OF9 C19 C20 DOUB Y N 23 OF9 C13 C14 SING N N 24 OF9 C18 C17 SING N N 25 OF9 O26 C25 SING N N 26 OF9 C14 C15 SING N N 27 OF9 N16 C15 SING N N 28 OF9 N16 C17 SING N N 29 OF9 C21 C20 SING Y N 30 OF9 C15 O37 DOUB N N 31 OF9 C17 C25 SING N N 32 OF9 C25 C27 SING N N 33 OF9 N28 C27 SING N N 34 OF9 N28 C29 SING N N 35 OF9 C27 O36 DOUB N N 36 OF9 C31 C32 DOUB Y N 37 OF9 C31 C30 SING Y N 38 OF9 C29 C30 SING N N 39 OF9 C32 C33 SING Y N 40 OF9 C30 N35 DOUB Y N 41 OF9 C33 C34 DOUB Y N 42 OF9 N35 C34 SING Y N 43 OF9 C13 H1 SING N N 44 OF9 C13 H2 SING N N 45 OF9 C17 H3 SING N N 46 OF9 C20 H4 SING N N 47 OF9 C21 H5 SING N N 48 OF9 C22 H6 SING N N 49 OF9 C24 H7 SING N N 50 OF9 C04 H8 SING N N 51 OF9 C04 H9 SING N N 52 OF9 C05 H10 SING N N 53 OF9 C05 H11 SING N N 54 OF9 C06 H12 SING N N 55 OF9 C09 H13 SING N N 56 OF9 C09 H14 SING N N 57 OF9 C14 H15 SING N N 58 OF9 C18 H16 SING N N 59 OF9 C18 H17 SING N N 60 OF9 C23 H18 SING N N 61 OF9 C25 H19 SING N N 62 OF9 C29 H20 SING N N 63 OF9 C29 H21 SING N N 64 OF9 C31 H22 SING N N 65 OF9 C32 H23 SING N N 66 OF9 C33 H24 SING N N 67 OF9 C34 H25 SING N N 68 OF9 C39 H26 SING N N 69 OF9 C39 H27 SING N N 70 OF9 C40 H28 SING N N 71 OF9 C40 H29 SING N N 72 OF9 N16 H30 SING N N 73 OF9 N28 H31 SING N N 74 OF9 O26 H32 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OF9 InChI InChI 1.06 "InChI=1S/C28H32F4N4O4/c29-27(30)11-9-19(10-12-27)26(40)36-17-28(31,32)15-22(36)24(38)35-21(14-18-6-2-1-3-7-18)23(37)25(39)34-16-20-8-4-5-13-33-20/h1-8,13,19,21-23,37H,9-12,14-17H2,(H,34,39)(H,35,38)/t21-,22-,23+/m1/s1" OF9 InChIKey InChI 1.06 QXLYQUMSFSBBGE-ZLNRFVROSA-N OF9 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]([C@@H](Cc1ccccc1)NC(=O)[C@H]2CC(F)(F)CN2C(=O)C3CCC(F)(F)CC3)C(=O)NCc4ccccn4" OF9 SMILES CACTVS 3.385 "O[CH]([CH](Cc1ccccc1)NC(=O)[CH]2CC(F)(F)CN2C(=O)C3CCC(F)(F)CC3)C(=O)NCc4ccccn4" OF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@H]([C@@H](C(=O)NCc2ccccn2)O)NC(=O)[C@H]3CC(CN3C(=O)C4CCC(CC4)(F)F)(F)F" OF9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(C(=O)NCc2ccccn2)O)NC(=O)C3CC(CN3C(=O)C4CCC(CC4)(F)F)(F)F" # _pdbx_chem_comp_identifier.comp_id OF9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-1-[4,4-bis(fluoranyl)cyclohexyl]carbonyl-4,4-bis(fluoranyl)-~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(pyridin-2-ylmethylamino)butan-2-yl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OF9 "Create component" 2023-01-31 PDBJ OF9 "Initial release" 2023-08-16 RCSB #