data_OFC # _chem_comp.id OFC _chem_comp.name "4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-L-ribofuranosyl)pyrimidin-2(1H)-one" _chem_comp.type "L-DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 F N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-04 _chem_comp.pdbx_modified_date 2022-03-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OFC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MOO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OFC N1 N1 N 0 1 N N N -9.868 57.389 -9.480 2.332 -0.274 -0.306 N1 OFC 1 OFC C2 C1 C 0 1 N N N -10.871 57.988 -8.788 3.616 0.129 -0.314 C2 OFC 2 OFC O2 O1 O 0 1 N N N -12.048 57.964 -9.143 3.877 1.294 -0.565 O2 OFC 3 OFC P P1 P 0 1 N N N -5.356 54.729 -10.404 -4.318 -0.921 -0.010 P OFC 4 OFC N3 N2 N 0 1 N N N -10.512 58.675 -7.689 4.605 -0.723 -0.052 N3 OFC 5 OFC C4 C2 C 0 1 N N N -9.205 58.780 -7.275 4.349 -1.995 0.223 C4 OFC 6 OFC N4 N3 N 0 1 N N N -8.919 59.472 -6.177 5.379 -2.866 0.492 N4 OFC 7 OFC C5 C3 C 0 1 N N N -8.175 58.141 -7.963 3.014 -2.449 0.239 C5 OFC 8 OFC C6 C4 C 0 1 N N N -8.556 57.460 -9.083 2.019 -1.571 -0.029 C6 OFC 9 OFC "C1'" C5 C 0 1 N N S -10.312 56.709 -10.710 1.264 0.688 -0.592 "C1'" OFC 10 OFC "O4'" O2 O 0 1 N N N -9.105 56.477 -11.495 -0.029 0.070 -0.417 "O4'" OFC 11 OFC "C2'" C6 C 0 1 N N S -11.015 55.470 -10.490 1.292 1.842 0.435 "C2'" OFC 12 OFC "F2'" F1 F 0 1 N N N -11.889 55.279 -11.583 1.955 2.954 -0.095 "F2'" OFC 13 OFC "C3'" C7 C 0 1 N N S -9.829 54.530 -10.548 -0.200 2.163 0.679 "C3'" OFC 14 OFC "O3'" O3 O 0 1 N N N -10.331 53.235 -10.839 -0.491 3.509 0.298 "O3'" OFC 15 OFC "C4'" C8 C 0 1 N N S -9.069 55.092 -11.733 -0.952 1.165 -0.229 "C4'" OFC 16 OFC "C5'" C9 C 0 1 N N N -7.637 54.607 -11.893 -2.227 0.674 0.461 "C5'" OFC 17 OFC "O5'" O4 O 0 1 N N N -6.997 54.939 -10.642 -2.929 -0.213 -0.412 "O5'" OFC 18 OFC OP1 O5 O 0 1 N N N -5.058 55.117 -9.024 -4.147 -1.658 1.262 OP1 OFC 19 OFC OP2 O6 O 0 1 N N N -5.136 53.363 -11.000 -5.459 0.201 0.168 OP2 OFC 20 OFC H41 H1 H 0 1 N N N -9.652 59.912 -5.658 6.297 -2.550 0.481 H1 OFC 21 OFC H42 H2 H 0 1 N N N -7.971 59.553 -5.870 5.189 -3.795 0.693 H2 OFC 22 OFC H5 H3 H 0 1 N N N -7.147 58.182 -7.633 2.789 -3.482 0.461 H3 OFC 23 OFC H6 H4 H 0 1 N N N -7.802 56.962 -9.675 0.989 -1.895 -0.022 H4 OFC 24 OFC "H1'" H5 H 0 1 N N N -10.967 57.394 -11.268 1.367 1.078 -1.604 H5 OFC 25 OFC "H2'" H6 H 0 1 N N N -11.520 55.431 -9.514 1.769 1.519 1.360 H6 OFC 26 OFC "H3'" H7 H 0 1 N N N -9.232 54.569 -9.625 -0.460 1.999 1.725 H7 OFC 27 OFC "HO3'" H8 H 0 0 N Y N -10.803 52.901 -10.085 0.001 4.175 0.797 H8 OFC 28 OFC "H4'" H9 H 0 1 N N N -9.624 54.852 -12.652 -1.191 1.628 -1.186 H9 OFC 29 OFC "H5'" H10 H 0 1 N N N -7.612 53.521 -12.066 -1.964 0.149 1.379 H10 OFC 30 OFC "H5''" H11 H 0 0 N N N -7.144 55.123 -12.730 -2.862 1.528 0.699 H11 OFC 31 OFC HOP2 H13 H 0 0 N N N -4.771 52.784 -10.341 -5.625 0.724 -0.628 H13 OFC 32 OFC OP3 OP3 O 0 1 N Y N -4.664 55.779 -11.382 -4.753 -1.948 -1.172 OP3 OFC 33 OFC HOP3 H12 H 0 0 N Y N -4.205 56.434 -10.870 -5.583 -2.411 -0.997 H12 OFC 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OFC "C5'" "C4'" SING N N 1 OFC "C5'" "O5'" SING N N 2 OFC "C4'" "O4'" SING N N 3 OFC "C4'" "C3'" SING N N 4 OFC "F2'" "C2'" SING N N 5 OFC "O4'" "C1'" SING N N 6 OFC OP2 P SING N N 7 OFC "O3'" "C3'" SING N N 8 OFC "C1'" "C2'" SING N N 9 OFC "C1'" N1 SING N N 10 OFC "O5'" P SING N N 11 OFC "C3'" "C2'" SING N N 12 OFC P OP1 DOUB N N 13 OFC N1 C6 SING N N 14 OFC N1 C2 SING N N 15 OFC O2 C2 DOUB N N 16 OFC C6 C5 DOUB N N 17 OFC C2 N3 SING N N 18 OFC C5 C4 SING N N 19 OFC N3 C4 DOUB N N 20 OFC C4 N4 SING N N 21 OFC N4 H41 SING N N 22 OFC N4 H42 SING N N 23 OFC C5 H5 SING N N 24 OFC C6 H6 SING N N 25 OFC "C1'" "H1'" SING N N 26 OFC "C2'" "H2'" SING N N 27 OFC "C3'" "H3'" SING N N 28 OFC "O3'" "HO3'" SING N N 29 OFC "C4'" "H4'" SING N N 30 OFC "C5'" "H5'" SING N N 31 OFC "C5'" "H5''" SING N N 32 OFC OP2 HOP2 SING N N 33 OFC P OP3 SING N N 34 OFC OP3 HOP3 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OFC SMILES ACDLabs 12.01 "O=P(O)(O)OCC1OC(N2C=CC(N)=NC2=O)C(F)C1O" OFC InChI InChI 1.03 "InChI=1S/C9H13FN3O7P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)13-2-1-5(11)12-9(13)15/h1-2,4,6-8,14H,3H2,(H2,11,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m0/s1" OFC InChIKey InChI 1.03 KTAATIGPZHTGOP-PSQAKQOGSA-N OFC SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@H]2O[C@@H](CO[P](O)(O)=O)[C@H](O)[C@@H]2F" OFC SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F" OFC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@@H]2[C@H]([C@H]([C@@H](O2)COP(=O)(O)O)O)F" OFC SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OFC "SYSTEMATIC NAME" ACDLabs 12.01 "4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-L-ribofuranosyl)pyrimidin-2(1H)-one" OFC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S},3~{S},4~{S},5~{S})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OFC "Create component" 2021-05-04 RCSB OFC "Initial release" 2022-03-16 RCSB ##