data_OFD
#
_chem_comp.id OFD
_chem_comp.name "[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanophenyl]acetic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H18 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-06-24
_chem_comp.pdbx_modified_date 2019-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 442.427
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OFD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6PFH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OFD O1 O1 O 0 1 N N N 21.240 90.794 215.595 4.669 -1.828 -1.233 O1 OFD 1
OFD C1 C1 C 0 1 N N N 19.867 92.373 212.749 6.701 -1.081 1.479 C1 OFD 2
OFD O2 O2 O 0 1 N N N 25.668 86.860 213.453 -2.068 -1.918 -0.097 O2 OFD 3
OFD C2 C2 C 0 1 Y N N 21.746 93.496 213.317 5.712 0.891 0.784 C2 OFD 4
OFD C3 C3 C 0 1 Y N N 22.028 92.689 214.386 5.039 0.199 -0.232 C3 OFD 5
OFD C4 C4 C 0 1 N N N 21.091 91.580 214.663 5.237 -1.194 -0.361 C4 OFD 6
OFD C5 C5 C 0 1 Y N N 23.229 93.184 214.986 4.243 1.193 -0.950 C5 OFD 7
OFD C6 C6 C 0 1 Y N N 23.641 94.268 214.251 4.471 2.374 -0.352 C6 OFD 8
OFD C7 C7 C 0 1 N N N 23.954 92.620 216.175 3.342 0.942 -2.131 C7 OFD 9
OFD C8 C8 C 0 1 Y N N 24.389 91.228 215.802 1.986 0.502 -1.644 C8 OFD 10
OFD C9 C9 C 0 1 Y N N 24.742 90.951 214.464 1.727 -0.843 -1.447 C9 OFD 11
OFD C10 C10 C 0 1 Y N N 25.136 89.653 214.086 0.488 -1.252 -1.001 C10 OFD 12
OFD C11 C11 C 0 1 Y N N 25.190 88.623 215.046 -0.507 -0.306 -0.748 C11 OFD 13
OFD C12 C12 C 0 1 Y N N 24.830 88.890 216.384 -0.240 1.049 -0.948 C12 OFD 14
OFD O3 O3 O 0 1 N N N 30.755 86.383 214.731 -5.150 2.590 -0.691 O3 OFD 15
OFD C13 C13 C 0 1 Y N N 24.429 90.192 216.761 1.006 1.446 -1.390 C13 OFD 16
OFD C14 C14 C 0 1 N N N 25.605 87.243 214.620 -1.838 -0.737 -0.271 C14 OFD 17
OFD C15 C15 C 0 1 Y N N 26.319 85.046 215.546 -4.088 -0.234 0.313 C15 OFD 18
OFD C16 C16 C 0 1 Y N N 27.523 84.643 214.917 -4.919 0.610 1.041 C16 OFD 19
OFD C17 C17 C 0 1 Y N N 27.847 83.270 214.851 -6.197 0.207 1.379 C17 OFD 20
OFD C18 C18 C 0 1 Y N N 26.989 82.304 215.412 -6.658 -1.036 0.996 C18 OFD 21
OFD C19 C19 C 0 1 Y N N 25.793 82.708 216.037 -5.831 -1.892 0.264 C19 OFD 22
OFD C20 C20 C 0 1 Y N N 25.463 84.075 216.102 -4.543 -1.483 -0.082 C20 OFD 23
OFD C21 C21 C 0 1 N N N 24.869 81.690 216.636 -6.306 -3.183 -0.134 C21 OFD 24
OFD C22 C22 C 0 1 N N N 28.459 85.650 214.309 -4.424 1.969 1.464 C22 OFD 25
OFD C23 C23 C 0 1 N N N 29.779 85.698 215.026 -4.643 2.954 0.344 C23 OFD 26
OFD N1 N1 N 0 1 N N N 20.055 91.485 213.817 6.073 -1.804 0.509 N1 OFD 27
OFD N2 N2 N 0 1 N N N 20.663 93.368 212.464 6.525 0.214 1.608 N2 OFD 28
OFD N3 N3 N 0 1 Y N N 22.723 94.456 213.231 5.350 2.203 0.688 N3 OFD 29
OFD N4 N4 N 0 1 N N N 18.675 92.086 211.959 7.540 -1.727 2.351 N4 OFD 30
OFD N5 N5 N 0 1 N N N 25.906 86.446 215.647 -2.796 0.179 -0.027 N5 OFD 31
OFD N6 N6 N 0 1 N N N 24.154 80.908 217.098 -6.683 -4.207 -0.450 N6 OFD 32
OFD O4 O4 O 0 1 N N N 29.762 84.851 216.088 -4.276 4.236 0.497 O4 OFD 33
OFD H1 H1 H 0 1 N N N 24.521 94.866 214.435 4.030 3.315 -0.645 H1 OFD 34
OFD H2 H2 H 0 1 N N N 24.831 93.240 216.412 3.240 1.859 -2.712 H2 OFD 35
OFD H3 H3 H 0 1 N N N 23.283 92.586 217.046 3.774 0.161 -2.758 H3 OFD 36
OFD H4 H4 H 0 1 N N N 24.710 91.739 213.726 2.498 -1.574 -1.643 H4 OFD 37
OFD H5 H5 H 0 1 N N N 25.397 89.447 213.059 0.287 -2.302 -0.848 H5 OFD 38
OFD H6 H6 H 0 1 N N N 24.861 88.100 217.120 -1.005 1.787 -0.755 H6 OFD 39
OFD H7 H7 H 0 1 N N N 24.152 90.395 217.785 1.215 2.494 -1.542 H7 OFD 40
OFD H8 H8 H 0 1 N N N 28.760 82.958 214.366 -6.837 0.867 1.945 H8 OFD 41
OFD H9 H9 H 0 1 N N N 27.247 81.257 215.363 -7.657 -1.348 1.263 H9 OFD 42
OFD H10 H10 H 0 1 N N N 24.546 84.382 216.582 -3.901 -2.138 -0.651 H10 OFD 43
OFD H11 H11 H 0 1 N N N 28.636 85.380 213.257 -4.971 2.296 2.348 H11 OFD 44
OFD H12 H12 H 0 1 N N N 27.992 86.644 214.359 -3.360 1.913 1.694 H12 OFD 45
OFD H13 H13 H 0 1 N N N 19.390 90.751 213.954 6.227 -2.760 0.442 H13 OFD 46
OFD H14 H14 H 0 1 N N N 22.765 95.178 212.540 5.667 2.911 1.270 H14 OFD 47
OFD H15 H15 H 0 1 N N N 18.447 92.659 211.172 7.678 -2.684 2.272 H15 OFD 48
OFD H16 H16 H 0 1 N N N 18.086 91.316 212.204 7.995 -1.228 3.047 H16 OFD 49
OFD H17 H17 H 0 1 N N N 25.844 86.839 216.564 -2.589 1.125 -0.088 H17 OFD 50
OFD H18 H18 H 0 1 N N N 30.600 84.886 216.535 -4.437 4.831 -0.249 H18 OFD 51
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OFD N4 C1 SING N N 1
OFD N2 C1 DOUB N N 2
OFD N2 C2 SING N N 3
OFD C1 N1 SING N N 4
OFD N3 C2 SING Y N 5
OFD N3 C6 SING Y N 6
OFD C2 C3 DOUB Y N 7
OFD O2 C14 DOUB N N 8
OFD N1 C4 SING N N 9
OFD C10 C9 DOUB Y N 10
OFD C10 C11 SING Y N 11
OFD C6 C5 DOUB Y N 12
OFD C22 C16 SING N N 13
OFD C22 C23 SING N N 14
OFD C3 C4 SING N N 15
OFD C3 C5 SING Y N 16
OFD C9 C8 SING Y N 17
OFD C14 C11 SING N N 18
OFD C14 N5 SING N N 19
OFD C4 O1 DOUB N N 20
OFD O3 C23 DOUB N N 21
OFD C17 C16 DOUB Y N 22
OFD C17 C18 SING Y N 23
OFD C16 C15 SING Y N 24
OFD C5 C7 SING N N 25
OFD C23 O4 SING N N 26
OFD C11 C12 DOUB Y N 27
OFD C18 C19 DOUB Y N 28
OFD C15 N5 SING N N 29
OFD C15 C20 DOUB Y N 30
OFD C8 C7 SING N N 31
OFD C8 C13 DOUB Y N 32
OFD C19 C20 SING Y N 33
OFD C19 C21 SING N N 34
OFD C12 C13 SING Y N 35
OFD C21 N6 TRIP N N 36
OFD C6 H1 SING N N 37
OFD C7 H2 SING N N 38
OFD C7 H3 SING N N 39
OFD C9 H4 SING N N 40
OFD C10 H5 SING N N 41
OFD C12 H6 SING N N 42
OFD C13 H7 SING N N 43
OFD C17 H8 SING N N 44
OFD C18 H9 SING N N 45
OFD C20 H10 SING N N 46
OFD C22 H11 SING N N 47
OFD C22 H12 SING N N 48
OFD N1 H13 SING N N 49
OFD N3 H14 SING N N 50
OFD N4 H15 SING N N 51
OFD N4 H16 SING N N 52
OFD N5 H17 SING N N 53
OFD O4 H18 SING N N 54
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OFD SMILES ACDLabs 12.01 "O=C1c2c(N=C(N1)N)ncc2Cc3ccc(cc3)C(=O)Nc4cc(ccc4CC(=O)O)C#N"
OFD InChI InChI 1.03 "InChI=1S/C23H18N6O4/c24-10-13-3-6-15(9-18(30)31)17(8-13)27-21(32)14-4-1-12(2-5-14)7-16-11-26-20-19(16)22(33)29-23(25)28-20/h1-6,8,11H,7,9H2,(H,27,32)(H,30,31)(H4,25,26,28,29,33)"
OFD InChIKey InChI 1.03 ZVNRPTCYZJBJNB-UHFFFAOYSA-N
OFD SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2[nH]cc(Cc3ccc(cc3)C(=O)Nc4cc(ccc4CC(O)=O)C#N)c2C(=O)N1"
OFD SMILES CACTVS 3.385 "NC1=Nc2[nH]cc(Cc3ccc(cc3)C(=O)Nc4cc(ccc4CC(O)=O)C#N)c2C(=O)N1"
OFD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cc2c[nH]c3c2C(=O)NC(=N3)N)C(=O)Nc4cc(ccc4CC(=O)O)C#N"
OFD SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cc2c[nH]c3c2C(=O)NC(=N3)N)C(=O)Nc4cc(ccc4CC(=O)O)C#N"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OFD "SYSTEMATIC NAME" ACDLabs 12.01 "[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanophenyl]acetic acid"
OFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[2-[[4-[(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-5-yl)methyl]phenyl]carbonylamino]-4-cyano-phenyl]ethanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OFD "Create component" 2019-06-24 RCSB
OFD "Initial release" 2019-10-02 RCSB
##