data_OFU # _chem_comp.id OFU _chem_comp.name "(4S)-2-azanyl-4-methyl-4-[3-[4-[(1S)-1-[(2S)-1-methylpyrrolidin-1-ium-2-yl]ethoxy]pyrimidin-2-yl]-1,2,4-oxadiazol-5-yl]-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 N7 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-09-06 _chem_comp.pdbx_modified_date 2023-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.579 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OFU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AZZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OFU C4 C1 C 0 1 N N N 27.765 1.392 2.364 -5.617 0.315 -2.172 C4 OFU 1 OFU C5 C2 C 0 1 N N N 27.253 0.466 1.301 -6.845 1.238 -2.000 C5 OFU 2 OFU C6 C3 C 0 1 N N N 27.921 -0.825 1.638 -7.876 0.317 -1.300 C6 OFU 3 OFU C7 C4 C 0 1 N N S 26.470 0.766 4.454 -4.603 -0.797 -0.159 C7 OFU 4 OFU N12 N1 N 0 1 Y N N 24.165 -0.174 5.534 -2.200 0.117 0.594 N12 OFU 5 OFU C13 C5 C 0 1 Y N N 25.304 -0.643 6.038 -3.254 0.887 0.830 C13 OFU 6 OFU C15 C6 C 0 1 N N N 15.861 1.804 5.075 5.997 -1.849 -1.209 C15 OFU 7 OFU C17 C7 C 0 1 N N N 17.874 1.819 6.538 3.996 -2.722 -0.003 C17 OFU 8 OFU C20 C8 C 0 1 Y N N 17.370 -0.239 5.150 4.343 -0.269 -0.139 C20 OFU 9 OFU C21 C9 C 0 1 Y N N 17.516 -1.543 4.545 3.974 1.134 -0.074 C21 OFU 10 OFU C22 C10 C 0 1 Y N N 16.559 -1.798 3.572 4.767 1.938 -0.845 C22 OFU 11 OFU C24 C11 C 0 1 N N N 18.116 -0.516 7.528 4.061 -1.353 2.088 C24 OFU 12 OFU C28 C12 C 0 1 Y N N 21.758 -0.071 5.616 0.174 -0.376 0.661 C28 OFU 13 OFU C1 C13 C 0 1 N N N 29.046 -1.628 3.718 -7.732 -1.734 -0.018 C1 OFU 14 OFU C11 C14 C 0 1 Y N N 23.035 -0.602 6.119 -0.983 0.512 0.942 C11 OFU 15 OFU C14 C15 C 0 1 Y N N 25.376 -1.551 7.094 -3.065 2.122 1.452 C14 OFU 16 OFU C16 C16 C 0 1 N N N 16.376 2.077 6.473 5.519 -2.819 -0.124 C16 OFU 17 OFU C18 C17 C 0 1 N N S 18.236 0.336 6.253 3.626 -1.374 0.622 C18 OFU 18 OFU C19 C18 C 0 1 Y N N 16.318 0.443 4.637 5.388 -0.485 -0.945 C19 OFU 19 OFU C25 C19 C 0 1 Y N N 19.675 0.295 5.798 2.137 -1.167 0.531 C25 OFU 20 OFU C3 C20 C 0 1 N N S 27.754 0.550 3.646 -5.796 -0.793 -1.118 C3 OFU 21 OFU C31 C21 C 0 1 N N N 18.535 -2.502 4.845 2.888 1.626 0.718 C31 OFU 22 OFU C33 C22 C 0 1 N N N 26.401 2.126 5.109 -4.808 -1.877 0.905 C33 OFU 23 OFU C9 C23 C 0 1 Y N N 24.148 -1.945 7.588 -1.780 2.497 1.799 C9 OFU 24 OFU N10 N2 N 0 1 Y N N 22.970 -1.502 7.124 -0.774 1.679 1.533 N10 OFU 25 OFU N2 N3 N 1 1 N N N 27.896 -0.877 3.137 -7.038 -0.489 -0.375 N2 OFU 26 OFU N27 N4 N 0 1 Y N N 21.549 0.749 4.622 0.131 -1.547 0.083 N27 OFU 27 OFU N29 N5 N 0 1 Y N N 20.640 -0.338 6.360 1.470 -0.121 0.951 N29 OFU 28 OFU N30 N6 N 0 1 N N N 16.424 -2.891 2.799 4.624 3.310 -0.956 N30 OFU 29 OFU N32 N7 N 0 1 N N N 19.334 -3.302 5.049 2.026 2.017 1.347 N32 OFU 30 OFU O26 O1 O 0 1 Y N N 20.129 1.013 4.704 1.248 -2.013 0.002 O26 OFU 31 OFU O8 O2 O 0 1 N N N 26.493 -0.253 5.496 -4.496 0.480 0.473 O8 OFU 32 OFU S23 S1 S 0 1 Y N N 15.489 -0.449 3.393 5.954 1.020 -1.649 S23 OFU 33 OFU H40 H1 H 0 1 N N N 28.786 1.728 2.128 -5.605 -0.114 -3.174 H40 OFU 34 OFU H39 H2 H 0 1 N N N 27.106 2.267 2.468 -4.697 0.869 -1.987 H39 OFU 35 OFU H42 H3 H 0 1 N N N 27.545 0.813 0.299 -6.600 2.092 -1.368 H42 OFU 36 OFU H41 H4 H 0 1 N N N 26.158 0.371 1.352 -7.219 1.569 -2.969 H41 OFU 37 OFU H44 H5 H 0 1 N N N 27.367 -1.673 1.210 -8.604 0.906 -0.744 H44 OFU 38 OFU H43 H6 H 0 1 N N N 28.956 -0.837 1.265 -8.373 -0.325 -2.027 H43 OFU 39 OFU H45 H7 H 0 1 N N N 25.598 0.626 3.799 -3.690 -1.005 -0.716 H45 OFU 40 OFU H49 H8 H 0 1 N N N 16.254 2.564 4.383 7.084 -1.776 -1.180 H49 OFU 41 OFU H48 H9 H 0 1 N N N 14.762 1.841 5.074 5.680 -2.210 -2.187 H48 OFU 42 OFU H53 H10 H 0 1 N N N 18.234 2.083 7.543 3.546 -2.800 -0.993 H53 OFU 43 OFU H52 H11 H 0 1 N N N 18.374 2.454 5.791 3.628 -3.530 0.629 H52 OFU 44 OFU H54 H12 H 0 1 N N N 18.750 -0.086 8.318 3.809 -0.388 2.528 H54 OFU 45 OFU H55 H13 H 0 1 N N N 17.069 -0.528 7.864 3.547 -2.146 2.632 H55 OFU 46 OFU H56 H14 H 0 1 N N N 18.444 -1.544 7.314 5.138 -1.510 2.150 H56 OFU 47 OFU H34 H15 H 0 1 N N N 28.968 -1.628 4.815 -7.949 -2.302 -0.923 H34 OFU 48 OFU H35 H16 H 0 1 N N N 29.031 -2.664 3.349 -7.097 -2.328 0.640 H35 OFU 49 OFU H36 H17 H 0 1 N N N 29.988 -1.146 3.418 -8.664 -1.497 0.494 H36 OFU 50 OFU H47 H18 H 0 1 N N N 26.312 -1.915 7.491 -3.904 2.771 1.657 H47 OFU 51 OFU H50 H19 H 0 1 N N N 16.176 3.126 6.736 5.799 -3.837 -0.397 H50 OFU 52 OFU H51 H20 H 0 1 N N N 15.862 1.416 7.186 5.979 -2.556 0.828 H51 OFU 53 OFU H38 H21 H 0 1 N N N 28.626 0.811 4.264 -5.880 -1.763 -1.609 H38 OFU 54 OFU H61 H22 H 0 1 N N N 25.459 2.216 5.670 -3.959 -1.880 1.588 H61 OFU 55 OFU H59 H23 H 0 1 N N N 27.251 2.245 5.797 -5.722 -1.670 1.462 H59 OFU 56 OFU H60 H24 H 0 1 N N N 26.443 2.908 4.336 -4.890 -2.851 0.423 H60 OFU 57 OFU H46 H25 H 0 1 N N N 24.135 -2.656 8.401 -1.599 3.446 2.281 H46 OFU 58 OFU H58 H27 H 0 1 N N N 15.656 -2.763 2.171 3.922 3.766 -0.465 H58 OFU 59 OFU H57 H28 H 0 1 N N N 17.263 -3.034 2.274 5.226 3.816 -1.523 H57 OFU 60 OFU H37 H37 H 0 1 N N N 27.062 -1.363 3.400 -6.826 0.043 0.455 H37 OFU 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OFU C5 C6 SING N N 1 OFU C5 C4 SING N N 2 OFU C6 N2 SING N N 3 OFU C4 C3 SING N N 4 OFU N30 C22 SING N N 5 OFU N2 C3 SING N N 6 OFU N2 C1 SING N N 7 OFU S23 C22 SING Y N 8 OFU S23 C19 SING Y N 9 OFU C22 C21 DOUB Y N 10 OFU C3 C7 SING N N 11 OFU C7 C33 SING N N 12 OFU C7 O8 SING N N 13 OFU C21 C31 SING N N 14 OFU C21 C20 SING Y N 15 OFU N27 O26 SING Y N 16 OFU N27 C28 DOUB Y N 17 OFU C19 C15 SING N N 18 OFU C19 C20 DOUB Y N 19 OFU O26 C25 SING Y N 20 OFU C31 N32 TRIP N N 21 OFU C15 C16 SING N N 22 OFU C20 C18 SING N N 23 OFU O8 C13 SING N N 24 OFU N12 C13 DOUB Y N 25 OFU N12 C11 SING Y N 26 OFU C28 C11 SING N N 27 OFU C28 N29 SING Y N 28 OFU C25 C18 SING N N 29 OFU C25 N29 DOUB Y N 30 OFU C13 C14 SING Y N 31 OFU C11 N10 DOUB Y N 32 OFU C18 C17 SING N N 33 OFU C18 C24 SING N N 34 OFU C16 C17 SING N N 35 OFU C14 C9 DOUB Y N 36 OFU N10 C9 SING Y N 37 OFU C4 H40 SING N N 38 OFU C4 H39 SING N N 39 OFU C5 H42 SING N N 40 OFU C5 H41 SING N N 41 OFU C6 H44 SING N N 42 OFU C6 H43 SING N N 43 OFU C7 H45 SING N N 44 OFU C15 H49 SING N N 45 OFU C15 H48 SING N N 46 OFU C17 H53 SING N N 47 OFU C17 H52 SING N N 48 OFU C24 H54 SING N N 49 OFU C24 H55 SING N N 50 OFU C24 H56 SING N N 51 OFU C1 H34 SING N N 52 OFU C1 H35 SING N N 53 OFU C1 H36 SING N N 54 OFU C14 H47 SING N N 55 OFU C16 H50 SING N N 56 OFU C16 H51 SING N N 57 OFU C3 H38 SING N N 58 OFU C33 H61 SING N N 59 OFU C33 H59 SING N N 60 OFU C33 H60 SING N N 61 OFU C9 H46 SING N N 62 OFU N30 H58 SING N N 63 OFU N30 H57 SING N N 64 OFU N2 H37 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OFU InChI InChI 1.06 "InChI=1S/C23H27N7O2S/c1-13(15-6-5-11-30(15)3)31-17-8-10-26-20(27-17)21-28-22(32-29-21)23(2)9-4-7-16-18(23)14(12-24)19(25)33-16/h8,10,13,15H,4-7,9,11,25H2,1-3H3/p+1/t13-,15-,23-/m0/s1" OFU InChIKey InChI 1.06 MIUFORKWYHBPRW-HMFCALDFSA-O OFU SMILES_CANONICAL CACTVS 3.385 "C[C@H](Oc1ccnc(n1)c2noc(n2)[C@@]3(C)CCCc4sc(N)c(C#N)c34)[C@@H]5CCC[NH+]5C" OFU SMILES CACTVS 3.385 "C[CH](Oc1ccnc(n1)c2noc(n2)[C]3(C)CCCc4sc(N)c(C#N)c34)[CH]5CCC[NH+]5C" OFU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]([C@@H]1CCC[NH+]1C)Oc2ccnc(n2)c3nc(on3)[C@]4(CCCc5c4c(c(s5)N)C#N)C" OFU SMILES "OpenEye OEToolkits" 2.0.7 "CC(C1CCC[NH+]1C)Oc2ccnc(n2)c3nc(on3)C4(CCCc5c4c(c(s5)N)C#N)C" # _pdbx_chem_comp_identifier.comp_id OFU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{S})-2-azanyl-4-methyl-4-[3-[4-[(1~{S})-1-[(2~{S})-1-methylpyrrolidin-1-ium-2-yl]ethoxy]pyrimidin-2-yl]-1,2,4-oxadiazol-5-yl]-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OFU "Create component" 2022-09-06 PDBE OFU "Modify charge" 2023-06-01 PDBE OFU "Initial release" 2023-06-07 RCSB #