data_OG6
#
_chem_comp.id OG6
_chem_comp.name "6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C5 H6 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "6-Formyl-uracil hydrate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-02-01
_chem_comp.pdbx_modified_date 2023-07-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 158.112
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OG6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8I6C
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OG6 O2 O1 O 0 1 N N N 0.507 17.738 -7.841 2.704 -0.002 1.174 O2 OG6 1
OG6 C10 C1 C 0 1 N N N 0.358 16.532 -7.934 2.114 0.579 0.010 C10 OG6 2
OG6 C06 C2 C 0 1 N N N 0.022 16.035 -9.278 0.633 0.299 0.004 C06 OG6 3
OG6 C07 C3 C 0 1 N N N 0.464 14.768 -9.674 -0.250 1.320 0.009 C07 OG6 4
OG6 C09 C4 C 0 1 N N N 0.255 14.345 -10.976 -1.636 1.032 0.003 C09 OG6 5
OG6 O02 O2 O 0 1 N N N 0.657 13.208 -11.332 -2.452 1.936 0.007 O02 OG6 6
OG6 N05 N1 N 0 1 N N N -0.367 15.181 -11.826 -2.045 -0.253 -0.006 N05 OG6 7
OG6 C08 C5 C 0 1 N N N -0.771 16.418 -11.415 -1.142 -1.252 -0.011 C08 OG6 8
OG6 O01 O3 O 0 1 N N N -1.343 17.195 -12.205 -1.525 -2.406 -0.020 O01 OG6 9
OG6 N04 N2 N 0 1 N N N -0.567 16.855 -10.177 0.178 -0.991 -0.011 N04 OG6 10
OG6 H1 H1 H 0 1 N N N 1.430 16.407 -8.148 2.280 1.656 0.018 H1 OG6 11
OG6 H2 H2 H 0 1 N N N 0.966 14.123 -8.968 0.096 2.343 0.017 H2 OG6 12
OG6 H4 H4 H 0 1 N N N -0.535 14.893 -12.769 -2.992 -0.459 -0.006 H4 OG6 13
OG6 O1 O4 O 0 1 N N N ? ? ? 2.711 0.014 -1.159 O1 OG6 14
OG6 H5 H5 H 0 1 N N N 0.720 17.963 -6.943 2.595 -0.961 1.234 H5 OG6 15
OG6 H6 H6 H 0 1 N N N ? ? ? 3.665 0.155 -1.222 H6 OG6 16
OG6 H3 H3 H 0 1 N N N -0.846 17.779 -9.914 0.812 -1.725 -0.015 H3 OG6 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OG6 O01 C08 DOUB N N 1
OG6 N05 C08 SING N N 2
OG6 N05 C09 SING N N 3
OG6 C08 N04 SING N N 4
OG6 O02 C09 DOUB N N 5
OG6 C09 C07 SING N N 6
OG6 N04 C06 SING N N 7
OG6 C07 C06 DOUB N N 8
OG6 C06 C10 SING N N 9
OG6 C10 O2 SING N N 10
OG6 C10 H1 SING N N 11
OG6 C07 H2 SING N N 12
OG6 N05 H4 SING N N 13
OG6 C10 O1 SING N N 14
OG6 O2 H5 SING N N 15
OG6 O1 H6 SING N N 16
OG6 N04 H3 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OG6 InChI InChI 1.06 "InChI=1S/C5H6N2O4/c8-3-1-2(4(9)10)6-5(11)7-3/h1,4,9-10H,(H2,6,7,8,11)"
OG6 InChIKey InChI 1.06 DUGHQFVNXIWPEA-UHFFFAOYSA-N
OG6 SMILES_CANONICAL CACTVS 3.385 "OC(O)C1=CC(=O)NC(=O)N1"
OG6 SMILES CACTVS 3.385 "OC(O)C1=CC(=O)NC(=O)N1"
OG6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(NC(=O)NC1=O)C(O)O"
OG6 SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(NC(=O)NC1=O)C(O)O"
#
_pdbx_chem_comp_identifier.comp_id OG6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "6-[bis(oxidanyl)methyl]-1~{H}-pyrimidine-2,4-dione"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id OG6
_pdbx_chem_comp_synonyms.name "6-Formyl-uracil hydrate"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OG6 "Create component" 2023-02-01 PDBJ
OG6 "Initial release" 2023-07-12 RCSB
#