data_OIB # _chem_comp.id OIB _chem_comp.name "hydroxylated gamma-amino valeroyl moiety" _chem_comp.type "L-beta-peptide, C-gamma linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S},3~{R},4~{S})-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid; (2S,3R,4S)-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-08 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OIB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AGY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OIB CA CE C 0 1 N N N Y N N -9.471 -1.110 -19.667 -2.257 1.210 0.510 CE OIB 1 OIB CG CG C 0 1 N N S Y N N -8.681 -2.107 -20.526 -1.291 0.225 -0.152 CG OIB 2 OIB CH3 CH3 C 0 1 N N N N N N -9.866 -4.100 -20.186 -2.545 -1.779 -0.547 CH3 OIB 3 OIB CB CB C 0 1 N N R Y N N -7.207 -1.682 -20.653 0.145 0.573 0.246 CB OIB 4 OIB CE CA C 0 1 N N S Y N N -6.446 -2.509 -21.706 1.110 -0.412 -0.416 CA OIB 5 OIB C C C 0 1 N N N Y N Y -6.526 -4.014 -21.436 2.524 -0.069 -0.024 C OIB 6 OIB N N N 0 1 N N N Y Y N -8.702 -0.920 -18.440 -3.635 0.876 0.128 N OIB 7 OIB OG OG O 0 1 N N N N N N -8.724 -3.362 -19.874 -1.596 -1.103 0.280 OG OIB 8 OIB OB OB O 0 1 N N N N N N -7.100 -0.312 -21.010 0.449 1.901 -0.185 OB OIB 9 OIB OA OA O 0 1 N N N N N N -7.022 -2.307 -22.969 0.805 -1.740 0.015 OA OIB 10 OIB O O O 0 1 N N N Y N Y -7.199 -4.729 -22.112 3.171 -0.842 0.641 O OIB 11 OIB HA1 HE1 H 0 1 N N N Y N N -9.581 -0.153 -20.199 -2.154 1.147 1.593 HE1 OIB 12 OIB HA2 HE2 H 0 1 N N N Y N N -10.466 -1.515 -19.433 -2.024 2.223 0.181 HE2 OIB 13 OIB HG HG H 0 1 N N N Y N N -9.132 -2.164 -21.528 -1.394 0.288 -1.235 HG OIB 14 OIB HB HB H 0 1 N N N Y N N -6.722 -1.846 -19.679 0.247 0.510 1.329 HB OIB 15 OIB OXT OXT O 0 1 N Y N Y N Y -5.986 -4.417 -20.654 3.065 1.095 -0.416 OXT OIB 16 OIB H2 H H 0 1 N Y N Y Y N -9.179 -0.274 -17.844 -4.293 1.513 0.553 H OIB 17 OIB HOB HB2 H 0 1 N N N N N N -7.563 0.219 -20.373 0.379 2.030 -1.141 HB2 OIB 18 OIB HOE HA2 H 0 1 N N N N N N -7.383 -3.126 -23.287 0.876 -1.869 0.971 HA2 OIB 19 OIB HXT HXT H 0 1 N Y N Y N Y -6.136 -5.354 -20.614 3.976 1.271 -0.140 HXT OIB 20 OIB HE1 HA1 H 0 1 N N N Y N N -5.390 -2.201 -21.705 1.008 -0.349 -1.499 HA1 OIB 21 OIB H H1 H 0 1 N N N Y Y N -8.603 -1.797 -17.970 -3.740 0.864 -0.875 H1 OIB 22 OIB H5 H2 H 0 1 N N N N N N -9.840 -5.060 -19.650 -2.156 -1.852 -1.563 H2 OIB 23 OIB H3 H3 H 0 1 N N N N N N -10.761 -3.536 -19.884 -2.723 -2.780 -0.154 H3 OIB 24 OIB H4 H4 H 0 1 N N N N N N -9.898 -4.285 -21.270 -3.482 -1.221 -0.557 H4 OIB 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OIB OA CE SING N N 1 OIB O C DOUB N N 2 OIB CE C SING N N 3 OIB CE CB SING N N 4 OIB OB CB SING N N 5 OIB CB CG SING N N 6 OIB CG OG SING N N 7 OIB CG CA SING N N 8 OIB CH3 OG SING N N 9 OIB CA N SING N N 10 OIB CA HA1 SING N N 11 OIB CA HA2 SING N N 12 OIB CG HG SING N N 13 OIB CB HB SING N N 14 OIB C OXT SING N N 15 OIB N H2 SING N N 16 OIB OB HOB SING N N 17 OIB OA HOE SING N N 18 OIB OXT HXT SING N N 19 OIB CE HE1 SING N N 20 OIB N H SING N N 21 OIB CH3 H5 SING N N 22 OIB CH3 H3 SING N N 23 OIB CH3 H4 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OIB InChI InChI 1.06 "InChI=1S/C6H13NO5/c1-12-3(2-7)4(8)5(9)6(10)11/h3-5,8-9H,2,7H2,1H3,(H,10,11)/t3-,4-,5-/m0/s1" OIB InChIKey InChI 1.06 AZZQNKGHODDJIM-YUPRTTJUSA-N OIB SMILES_CANONICAL CACTVS 3.385 "CO[C@@H](CN)[C@H](O)[C@H](O)C(O)=O" OIB SMILES CACTVS 3.385 "CO[CH](CN)[CH](O)[CH](O)C(O)=O" OIB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CO[C@@H](CN)[C@@H]([C@@H](C(=O)O)O)O" OIB SMILES "OpenEye OEToolkits" 3.1.0.0 "COC(CN)C(C(C(=O)O)O)O" # _pdbx_chem_comp_identifier.comp_id OIB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R},4~{S})-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OIB "Create component" 2022-09-08 PDBE OIB "Modify leaving atom flag" 2022-09-08 PDBE OIB "Initial release" 2023-08-16 RCSB OIB "Modify backbone" 2023-11-03 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 OIB "(2~{S},3~{R},4~{S})-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid" PDB ? 2 OIB "(2S,3R,4S)-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid" PDB ? #