data_OIG # _chem_comp.id OIG _chem_comp.name "beta-ethyl-adenosine diphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N5 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethyl hydrogen phosphate; [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] ethyl hydrogen phosphate; beta-ethyl-ADP" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-07 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 455.254 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OIG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AZO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OIG "C4'" C1 C 0 1 N N R N N N 20.292 -6.806 -8.228 -0.689 1.885 -0.506 C13 OIG 1 OIG "C1'" C2 C 0 1 N N R N N N 21.839 -5.118 -8.196 -2.727 0.790 -0.604 C15 OIG 2 OIG C8 C3 C 0 1 Y N N N N N 23.062 -4.462 -6.107 -3.035 -1.224 0.885 C17 OIG 3 OIG C6 C4 C 0 1 Y N N N N N 22.534 -0.925 -6.008 -6.361 -2.360 0.327 C20 OIG 4 OIG "C2'" C5 C 0 1 N N R N N N 22.548 -6.615 -8.116 -3.020 2.096 0.177 C26 OIG 5 OIG "C3'" C6 C 0 1 N N S N N N 21.700 -7.357 -8.702 -1.745 2.931 -0.099 C28 OIG 6 OIG C05 C7 C 0 1 N N N N N N 18.451 -10.736 -2.085 6.997 -2.447 -0.945 C05 OIG 7 OIG C06 C8 C 0 1 N N N N N N 19.261 -11.270 -0.904 6.902 -3.705 -1.810 C06 OIG 8 OIG "C5'" C9 C 0 1 N N N N N N 19.747 -7.477 -7.106 0.508 1.959 0.443 C12 OIG 9 OIG C5 C10 C 0 1 Y N N N N N 22.676 -2.318 -6.150 -5.079 -1.795 0.440 C19 OIG 10 OIG C2 C11 C 0 1 Y N N N N N 21.317 -0.828 -7.958 -6.898 -0.744 -1.232 C23 OIG 11 OIG C4 C12 C 0 1 Y N N N N N 22.091 -2.892 -7.258 -4.780 -0.669 -0.345 C25 OIG 12 OIG N9 N1 N 0 1 Y N N N N N 22.339 -4.207 -7.205 -3.486 -0.329 -0.040 N16 OIG 13 OIG N7 N2 N 0 1 Y N N N N N 23.270 -3.306 -5.451 -3.971 -2.085 1.162 N18 OIG 14 OIG N6 N3 N 0 1 N N N N N N 23.143 -0.231 -4.871 -6.711 -3.475 1.068 N21 OIG 15 OIG N1 N4 N 0 1 Y N N N N N 21.863 -0.227 -6.902 -7.230 -1.798 -0.507 N22 OIG 16 OIG N3 N5 N 0 1 Y N N N N N 21.419 -2.141 -8.137 -5.712 -0.180 -1.157 N24 OIG 17 OIG O1B O1 O 0 1 N N N N N N 19.436 -11.107 -5.791 5.878 -0.653 1.357 O01 OIG 18 OIG O2B O2 O 0 1 N N N N N N 17.194 -10.557 -4.740 6.277 0.744 -0.707 O03 OIG 19 OIG O3B O3 O 0 1 N N N N N N 19.128 -11.162 -3.219 5.715 -1.819 -0.875 O04 OIG 20 OIG O3A O4 O 0 1 N N N N N N 19.071 -8.893 -4.549 3.874 -0.120 -0.080 O07 OIG 21 OIG O1A O5 O 0 1 N N N N N N 21.636 -9.133 -4.196 3.591 2.188 0.902 O09 OIG 22 OIG O2A O6 O 0 1 N N N N N N 20.465 -6.884 -3.904 2.666 0.248 2.226 O10 OIG 23 OIG "O5'" O7 O 0 1 N N N N N N 20.814 -7.905 -6.280 1.523 1.056 -0.000 O11 OIG 24 OIG "O4'" O8 O 0 1 N N N N N N 20.580 -5.322 -7.918 -1.310 0.592 -0.412 O14 OIG 25 OIG "O2'" O9 O 0 1 N N N N N N 23.894 -6.643 -8.708 -4.181 2.750 -0.340 O27 OIG 26 OIG "O3'" O10 O 0 1 N N N N N N 21.751 -7.150 -10.199 -1.973 3.854 -1.167 O29 OIG 27 OIG PB P1 P 0 1 N N N N N N 18.699 -10.474 -4.629 5.445 -0.466 -0.045 P02 OIG 28 OIG PA P2 P 0 1 N N N N N N 20.544 -8.199 -4.663 2.928 0.872 0.765 P08 OIG 29 OIG "H4'" H1 H 0 1 N N N N N N 19.599 -6.859 -9.080 -0.362 2.066 -1.530 H1 OIG 30 OIG "H1'" H2 H 0 1 N N N N N N 21.998 -4.721 -9.209 -2.957 0.916 -1.663 H2 OIG 31 OIG H8 H3 H 0 1 N N N N N N 23.419 -5.434 -5.799 -2.047 -1.221 1.319 H3 OIG 32 OIG "H2'" H4 H 0 1 N N N N N N 22.631 -6.862 -7.047 -3.130 1.896 1.242 H4 OIG 33 OIG "H3'" H5 H 0 1 N N N N N N 21.778 -8.427 -8.457 -1.433 3.459 0.802 H5 OIG 34 OIG H6 H6 H 0 1 N N N N N N 18.405 -9.637 -2.054 7.322 -2.720 0.059 H6 OIG 35 OIG H7 H7 H 0 1 N N N N N N 17.431 -11.147 -2.069 7.717 -1.757 -1.384 H7 OIG 36 OIG H1 H8 H 0 1 N N N N N N 18.779 -10.968 0.038 6.577 -3.432 -2.814 H8 OIG 37 OIG H9 H9 H 0 1 N N N N N N 19.306 -12.368 -0.957 7.880 -4.184 -1.863 H9 OIG 38 OIG H10 H10 H 0 1 N N N N N N 20.280 -10.858 -0.943 6.183 -4.396 -1.370 H10 OIG 39 OIG "H5'1" H11 H 0 1 N N N N N N 19.094 -6.792 -6.545 0.903 2.974 0.452 H11 OIG 40 OIG "H5'2" H12 H 0 1 N N N N N N 19.164 -8.348 -7.441 0.191 1.683 1.449 H12 OIG 41 OIG H2 H13 H 0 1 N N N N N N 20.780 -0.236 -8.684 -7.635 -0.319 -1.898 H13 OIG 42 OIG HN61 H14 H 0 1 N N N N N N 22.951 0.748 -4.936 -6.069 -3.876 1.673 H14 OIG 43 OIG HN62 H15 H 0 1 N N N N N N 22.762 -0.590 -4.019 -7.599 -3.856 0.981 H15 OIG 44 OIG HOB2 H16 H 0 1 N N N N N N 16.960 -11.006 -5.544 6.044 0.923 -1.628 H16 OIG 45 OIG HOA2 H17 H 0 1 N N N N N N 21.140 -6.863 -3.235 2.233 -0.616 2.212 H17 OIG 46 OIG "HO2'" H18 H 0 1 N N N N N N 24.468 -6.066 -8.218 -4.404 3.573 0.117 H18 OIG 47 OIG "HO3'" H19 H 0 1 N N N N N N 22.581 -7.466 -10.535 -2.630 4.535 -0.965 H19 OIG 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OIG "O3'" "C3'" SING N N 1 OIG "O2'" "C2'" SING N N 2 OIG "C3'" "C4'" SING N N 3 OIG "C3'" "C2'" SING N N 4 OIG "C4'" "O4'" SING N N 5 OIG "C4'" "C5'" SING N N 6 OIG "C1'" "C2'" SING N N 7 OIG "C1'" "O4'" SING N N 8 OIG "C1'" N9 SING N N 9 OIG N3 C2 DOUB Y N 10 OIG N3 C4 SING Y N 11 OIG C2 N1 SING Y N 12 OIG C4 N9 SING Y N 13 OIG C4 C5 DOUB Y N 14 OIG N9 C8 SING Y N 15 OIG "C5'" "O5'" SING N N 16 OIG N1 C6 DOUB Y N 17 OIG "O5'" PA SING N N 18 OIG C5 C6 SING Y N 19 OIG C5 N7 SING Y N 20 OIG C8 N7 DOUB Y N 21 OIG C6 N6 SING N N 22 OIG O1B PB DOUB N N 23 OIG O2B PB SING N N 24 OIG PA O3A SING N N 25 OIG PA O1A DOUB N N 26 OIG PA O2A SING N N 27 OIG PB O3A SING N N 28 OIG PB O3B SING N N 29 OIG O3B C05 SING N N 30 OIG C05 C06 SING N N 31 OIG "C4'" "H4'" SING N N 32 OIG "C1'" "H1'" SING N N 33 OIG C8 H8 SING N N 34 OIG "C2'" "H2'" SING N N 35 OIG "C3'" "H3'" SING N N 36 OIG C05 H6 SING N N 37 OIG C05 H7 SING N N 38 OIG C06 H1 SING N N 39 OIG C06 H9 SING N N 40 OIG C06 H10 SING N N 41 OIG "C5'" "H5'1" SING N N 42 OIG "C5'" "H5'2" SING N N 43 OIG C2 H2 SING N N 44 OIG N6 HN61 SING N N 45 OIG N6 HN62 SING N N 46 OIG O2B HOB2 SING N N 47 OIG O2A HOA2 SING N N 48 OIG "O2'" "HO2'" SING N N 49 OIG "O3'" "HO3'" SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OIG InChI InChI 1.06 "InChI=1S/C12H19N5O10P2/c1-2-24-28(20,21)27-29(22,23)25-3-6-8(18)9(19)12(26-6)17-5-16-7-10(13)14-4-15-11(7)17/h4-6,8-9,12,18-19H,2-3H2,1H3,(H,20,21)(H,22,23)(H2,13,14,15)/t6-,8-,9-,12-/m1/s1" OIG InChIKey InChI 1.06 OBBAXRNSCNGYQO-WOUKDFQISA-N OIG SMILES_CANONICAL CACTVS 3.385 "CCO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" OIG SMILES CACTVS 3.385 "CCO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" OIG SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCOP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" OIG SMILES "OpenEye OEToolkits" 3.1.0.0 "CCOP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # _pdbx_chem_comp_identifier.comp_id OIG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethyl hydrogen phosphate" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 OIG "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethyl hydrogen phosphate" PDB ? 2 OIG "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] ethyl hydrogen phosphate" PUBCHEM ? 3 OIG beta-ethyl-ADP AUTHOR ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OIG "Create component" 2022-09-08 PDBE OIG "Initial release" 2024-03-20 RCSB #