data_OJB
#
_chem_comp.id OJB
_chem_comp.name "5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-~{N}-[3-(propanoylamino)propyl]pentanamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H35 N3 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-13
_chem_comp.pdbx_modified_date 2021-01-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 433.497
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OJB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6YAU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OJB C1 C1 C 0 1 N N N -2.924 28.083 15.708 -2.980 0.105 0.189 C1 OJB 1
OJB C12 C2 C 0 1 N N N -2.583 29.324 14.914 -1.729 -0.591 -0.278 C12 OJB 2
OJB C13 C3 C 0 1 N N N -3.602 29.659 13.822 -0.503 0.122 0.296 C13 OJB 3
OJB C14 C4 C 0 1 N N N -3.011 30.420 12.635 0.768 -0.585 -0.178 C14 OJB 4
OJB C15 C5 C 0 1 N N N -2.014 29.622 11.824 1.993 0.129 0.396 C15 OJB 5
OJB C19 C6 C 0 1 N N R -0.074 26.899 9.318 5.695 2.068 0.333 C19 OJB 6
OJB C20 C7 C 0 1 N N R -0.709 25.547 8.990 6.942 1.292 -0.102 C20 OJB 7
OJB C21 C8 C 0 1 N N R -1.479 25.022 10.205 6.878 -0.126 0.473 C21 OJB 8
OJB C22 C9 C 0 1 N N R -2.434 26.083 10.756 5.583 -0.797 0.004 C22 OJB 9
OJB N2 N1 N 0 1 N N N -1.941 27.193 15.844 -4.189 -0.352 -0.194 N2 OJB 10
OJB O3 O1 O 0 1 N N N -4.043 27.918 16.193 -2.901 1.074 0.914 O3 OJB 11
OJB O16 O2 O 0 1 N N N -2.633 28.414 11.374 3.181 -0.532 -0.048 O16 OJB 12
OJB C17 C10 C 0 1 N N R -1.732 27.431 10.944 4.389 0.059 0.435 C17 OJB 13
OJB O18 O3 O 0 1 N N N -1.096 27.828 9.738 4.527 1.374 -0.108 O18 OJB 14
OJB C23 C11 C 0 1 N N N 0.665 27.512 8.145 5.722 3.466 -0.287 C23 OJB 15
OJB O24 O4 O 0 1 N N N 1.371 28.686 8.522 4.620 4.229 0.210 O24 OJB 16
OJB O25 O5 O 0 1 N N N -1.586 25.691 7.878 6.991 1.227 -1.529 O25 OJB 17
OJB O26 O6 O 0 1 N N N -2.244 23.887 9.824 8.001 -0.880 0.012 O26 OJB 18
OJB N27 N2 N 0 1 N N N -3.031 25.626 11.999 5.475 -2.127 0.608 N27 OJB 19
OJB C28 C12 C 0 1 N N N -4.305 25.863 12.346 4.744 -3.085 0.003 C28 OJB 20
OJB C29 C13 C 0 1 N N N -4.753 25.250 13.643 4.633 -4.453 0.624 C29 OJB 21
OJB O30 O7 O 0 1 N N N -5.073 26.510 11.629 4.176 -2.845 -1.041 O30 OJB 22
OJB H1 H1 H 0 1 N N N -1.603 29.173 14.439 -1.740 -1.626 0.064 H1 OJB 23
OJB H2 H2 H 0 1 N N N -2.527 30.175 15.608 -1.685 -0.569 -1.367 H2 OJB 24
OJB H3 H3 H 0 1 N N N -4.397 30.275 14.267 -0.492 1.157 -0.046 H3 OJB 25
OJB H4 H4 H 0 1 N N N -4.033 28.718 13.450 -0.546 0.100 1.385 H4 OJB 26
OJB H5 H5 H 0 1 N N N -2.505 31.318 13.018 0.757 -1.620 0.164 H5 OJB 27
OJB H6 H6 H 0 1 N N N -3.836 30.719 11.971 0.811 -0.563 -1.267 H6 OJB 28
OJB H7 H7 H 0 1 N N N -1.143 29.378 12.449 2.004 1.164 0.053 H7 OJB 29
OJB H8 H8 H 0 1 N N N -1.688 30.214 10.956 1.950 0.107 1.484 H8 OJB 30
OJB H9 H9 H 0 1 N N N 0.643 26.751 10.139 5.680 2.151 1.419 H9 OJB 31
OJB H10 H10 H 0 1 N N N 0.092 24.833 8.748 7.833 1.797 0.271 H10 OJB 32
OJB H11 H11 H 0 1 N N N -0.759 24.751 10.991 6.891 -0.079 1.562 H11 OJB 33
OJB H12 H12 H 0 1 N N N -3.235 26.226 10.015 5.593 -0.889 -1.082 H12 OJB 34
OJB H13 H13 H 0 1 N N N -1.212 27.403 16.496 -4.253 -1.127 -0.774 H13 OJB 35
OJB H15 H15 H 0 1 N N N -0.962 27.292 11.717 4.357 0.116 1.523 H15 OJB 36
OJB H16 H16 H 0 1 N N N -0.062 27.770 7.361 6.656 3.963 -0.023 H16 OJB 37
OJB H17 H17 H 0 1 N N N 1.382 26.776 7.752 5.648 3.385 -1.371 H17 OJB 38
OJB H18 H18 H 0 1 N N N 1.821 29.042 7.765 4.575 5.128 -0.142 H18 OJB 39
OJB H19 H19 H 0 1 N N N -1.980 24.851 7.674 7.028 2.092 -1.961 H19 OJB 40
OJB H20 H20 H 0 1 N N N -2.722 23.560 10.577 8.856 -0.508 0.267 H20 OJB 41
OJB H21 H21 H 0 1 N N N -2.459 25.105 12.633 5.929 -2.319 1.443 H21 OJB 42
OJB H22 H22 H 0 1 N N N -5.817 25.477 13.808 5.205 -4.479 1.551 H22 OJB 43
OJB H23 H23 H 0 1 N N N -4.613 24.160 13.601 3.586 -4.671 0.837 H23 OJB 44
OJB H24 H24 H 0 1 N N N -4.157 25.664 14.469 5.026 -5.199 -0.067 H24 OJB 45
OJB C2 C14 C 0 1 N N N ? ? ? -5.406 0.322 0.265 C2 OJB 46
OJB C3 C15 C 0 1 N N N ? ? ? -6.632 -0.391 -0.310 C3 OJB 47
OJB C4 C16 C 0 1 N N N ? ? ? -7.903 0.313 0.169 C4 OJB 48
OJB N1 N3 N 0 1 N N N ? ? ? -9.076 -0.370 -0.381 N1 OJB 49
OJB C5 C17 C 0 1 N N N ? ? ? -10.314 0.077 -0.091 C5 OJB 50
OJB C6 C18 C 0 1 N N N ? ? ? -11.521 -0.625 -0.658 C6 OJB 51
OJB C7 C19 C 0 1 N N N ? ? ? -12.792 0.079 -0.178 C7 OJB 52
OJB O1 O8 O 0 1 N N N ? ? ? -10.457 1.045 0.625 O1 OJB 53
OJB H14 H14 H 0 1 N N N ? ? ? -5.448 0.295 1.354 H14 OJB 54
OJB H25 H25 H 0 1 N N N ? ? ? -5.397 1.358 -0.073 H25 OJB 55
OJB H26 H26 H 0 1 N N N ? ? ? -6.590 -0.364 -1.399 H26 OJB 56
OJB H27 H27 H 0 1 N N N ? ? ? -6.641 -1.427 0.028 H27 OJB 57
OJB H28 H28 H 0 1 N N N ? ? ? -7.944 0.286 1.258 H28 OJB 58
OJB H29 H29 H 0 1 N N N ? ? ? -7.894 1.349 -0.168 H29 OJB 59
OJB H30 H30 H 0 1 N N N ? ? ? -8.962 -1.145 -0.954 H30 OJB 60
OJB H31 H31 H 0 1 N N N ? ? ? -11.479 -0.598 -1.746 H31 OJB 61
OJB H32 H32 H 0 1 N N N ? ? ? -11.530 -1.661 -0.320 H32 OJB 62
OJB H33 H33 H 0 1 N N N ? ? ? -12.834 0.052 0.911 H33 OJB 63
OJB H34 H34 H 0 1 N N N ? ? ? -12.783 1.115 -0.516 H34 OJB 64
OJB H35 H35 H 0 1 N N N ? ? ? -13.665 -0.430 -0.588 H35 OJB 65
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OJB O25 C20 SING N N 1
OJB C23 O24 SING N N 2
OJB C23 C19 SING N N 3
OJB C20 C19 SING N N 4
OJB C20 C21 SING N N 5
OJB C19 O18 SING N N 6
OJB O18 C17 SING N N 7
OJB O26 C21 SING N N 8
OJB C21 C22 SING N N 9
OJB C22 C17 SING N N 10
OJB C22 N27 SING N N 11
OJB C17 O16 SING N N 12
OJB O16 C15 SING N N 13
OJB O30 C28 DOUB N N 14
OJB C15 C14 SING N N 15
OJB N27 C28 SING N N 16
OJB C28 C29 SING N N 17
OJB C14 C13 SING N N 18
OJB C13 C12 SING N N 19
OJB C12 C1 SING N N 20
OJB C1 N2 SING N N 21
OJB C1 O3 DOUB N N 22
OJB C12 H1 SING N N 23
OJB C12 H2 SING N N 24
OJB C13 H3 SING N N 25
OJB C13 H4 SING N N 26
OJB C14 H5 SING N N 27
OJB C14 H6 SING N N 28
OJB C15 H7 SING N N 29
OJB C15 H8 SING N N 30
OJB C19 H9 SING N N 31
OJB C20 H10 SING N N 32
OJB C21 H11 SING N N 33
OJB C22 H12 SING N N 34
OJB N2 H13 SING N N 35
OJB C17 H15 SING N N 36
OJB C23 H16 SING N N 37
OJB C23 H17 SING N N 38
OJB O24 H18 SING N N 39
OJB O25 H19 SING N N 40
OJB O26 H20 SING N N 41
OJB N27 H21 SING N N 42
OJB C29 H22 SING N N 43
OJB C29 H23 SING N N 44
OJB C29 H24 SING N N 45
OJB N2 C2 SING N N 46
OJB C2 C3 SING N N 47
OJB C3 C4 SING N N 48
OJB C4 N1 SING N N 49
OJB N1 C5 SING N N 50
OJB C5 C6 SING N N 51
OJB C6 C7 SING N N 52
OJB C5 O1 DOUB N N 53
OJB C2 H14 SING N N 54
OJB C2 H25 SING N N 55
OJB C3 H26 SING N N 56
OJB C3 H27 SING N N 57
OJB C4 H28 SING N N 58
OJB C4 H29 SING N N 59
OJB N1 H30 SING N N 60
OJB C6 H31 SING N N 61
OJB C6 H32 SING N N 62
OJB C7 H33 SING N N 63
OJB C7 H34 SING N N 64
OJB C7 H35 SING N N 65
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OJB InChI InChI 1.03 "InChI=1S/C19H35N3O8/c1-3-14(25)20-8-6-9-21-15(26)7-4-5-10-29-19-16(22-12(2)24)18(28)17(27)13(11-23)30-19/h13,16-19,23,27-28H,3-11H2,1-2H3,(H,20,25)(H,21,26)(H,22,24)/t13-,16-,17+,18-,19-/m1/s1"
OJB InChIKey InChI 1.03 IKUNNZGUTWUXRA-LQDZTQBFSA-N
OJB SMILES_CANONICAL CACTVS 3.385 "CCC(=O)NCCCNC(=O)CCCCO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1NC(C)=O"
OJB SMILES CACTVS 3.385 "CCC(=O)NCCCNC(=O)CCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O"
OJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)NCCCNC(=O)CCCCO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C"
OJB SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)NCCCNC(=O)CCCCOC1C(C(C(C(O1)CO)O)O)NC(=O)C"
#
_pdbx_chem_comp_identifier.comp_id OJB
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-~{N}-[3-(propanoylamino)propyl]pentanamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OJB "Create component" 2020-03-13 PDBE
OJB "Initial release" 2021-01-13 RCSB
##