data_OJC
#
_chem_comp.id OJC
_chem_comp.name "(2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H21 N5 O13 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-05-06
_chem_comp.pdbx_modified_date 2022-09-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 541.300
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OJC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7UXS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OJC N N1 N 0 1 Y N N -15.106 27.089 -18.720 -15.106 27.089 -18.720 N OJC 1
OJC C C1 C 0 1 Y N N -14.126 27.140 -17.809 -14.126 27.140 -17.809 C OJC 2
OJC O O1 O 0 1 N N N -14.687 29.872 -13.874 -14.687 29.872 -13.874 O OJC 3
OJC C1 C2 C 0 1 Y N N -16.019 28.082 -18.749 -16.019 28.082 -18.749 C1 OJC 4
OJC C2 C3 C 0 1 Y N N -15.866 29.136 -17.827 -15.866 29.136 -17.827 C2 OJC 5
OJC C3 C4 C 0 1 Y N N -14.792 29.055 -16.964 -14.792 29.055 -16.964 C3 OJC 6
OJC C10 C5 C 0 1 N N N -11.915 34.702 -12.145 -11.915 34.702 -12.145 C10 OJC 7
OJC C11 C6 C 0 1 N N R -11.154 33.724 -11.283 -11.154 33.724 -11.283 C11 OJC 8
OJC C12 C7 C 0 1 N N S -9.886 33.239 -11.993 -9.886 33.239 -11.993 C12 OJC 9
OJC C13 C8 C 0 1 N N R -9.962 31.717 -11.869 -9.962 31.717 -11.869 C13 OJC 10
OJC C14 C9 C 0 1 N N S -11.468 31.487 -11.802 -11.468 31.487 -11.802 C14 OJC 11
OJC C4 C10 C 0 1 Y N N -15.982 30.851 -16.587 -15.982 30.851 -16.587 C4 OJC 12
OJC C5 C11 C 0 1 N N R -14.056 30.451 -14.998 -14.056 30.451 -14.998 C5 OJC 13
OJC C6 C12 C 0 1 N N R -13.902 31.930 -14.629 -13.902 31.930 -14.629 C6 OJC 14
OJC C7 C13 C 0 1 N N S -13.420 31.774 -13.184 -13.420 31.774 -13.184 C7 OJC 15
OJC C8 C14 C 0 1 N N R -14.201 30.554 -12.692 -14.201 30.554 -12.692 C8 OJC 16
OJC C9 C15 C 0 1 N N N -15.374 30.869 -11.798 -15.374 30.869 -11.798 C9 OJC 17
OJC N1 N2 N 0 1 Y N N -13.883 28.080 -16.896 -13.883 28.080 -16.896 N1 OJC 18
OJC N2 N3 N 0 1 Y N N -14.877 30.167 -16.152 -14.877 30.167 -16.152 N2 OJC 19
OJC N3 N4 N 0 1 Y N N -16.616 30.275 -17.582 -16.616 30.275 -17.582 N3 OJC 20
OJC N4 N5 N 0 1 N N N -17.037 28.002 -19.629 -17.037 28.002 -19.629 N4 OJC 21
OJC O1 O2 O 0 1 N N N -16.121 31.983 -12.361 -16.121 31.983 -12.361 O1 OJC 22
OJC O10 O3 O 0 1 N N N -9.331 31.182 -10.709 -9.331 31.182 -10.709 O10 OJC 23
OJC O11 O4 O 0 1 N N N -8.707 33.768 -11.397 -8.707 33.768 -11.397 O11 OJC 24
OJC O12 O5 O 0 1 N N N -12.980 32.579 -15.481 -12.980 32.579 -15.481 O12 OJC 25
OJC O2 O6 O 0 1 N N N -15.765 33.436 -10.275 -15.765 33.436 -10.275 O2 OJC 26
OJC O3 O7 O 0 1 N N N -17.619 33.947 -11.970 -17.619 33.947 -11.970 O3 OJC 27
OJC O4 O8 O 0 1 N N N -15.209 34.296 -12.565 -15.209 34.296 -12.565 O4 OJC 28
OJC O5 O9 O 0 1 N N N -15.185 36.530 -11.384 -15.185 36.530 -11.384 O5 OJC 29
OJC O6 O10 O 0 1 N N N -13.988 36.124 -13.617 -13.988 36.124 -13.617 O6 OJC 30
OJC O7 O11 O 0 1 N N N -13.126 35.152 -11.506 -13.126 35.152 -11.506 O7 OJC 31
OJC O8 O12 O 0 1 N N N -11.948 32.555 -11.004 -11.948 32.555 -11.004 O8 OJC 32
OJC O9 O13 O 0 1 N N N -12.003 31.532 -13.117 -12.003 31.532 -13.117 O9 OJC 33
OJC P P1 P 0 1 N N N -16.211 33.437 -11.676 -16.211 33.437 -11.676 P OJC 34
OJC P1 P2 P 0 1 N N N -14.404 35.642 -12.283 -14.404 35.642 -12.283 P1 OJC 35
OJC H8 H1 H 0 1 N N N -13.439 26.306 -17.815 -13.439 26.306 -17.815 H8 OJC 36
OJC H14 H2 H 0 1 N N N -12.175 34.212 -13.095 -12.175 34.212 -13.095 H14 OJC 37
OJC H15 H3 H 0 1 N N N -11.274 35.573 -12.346 -11.274 35.573 -12.346 H15 OJC 38
OJC H4 H4 H 0 1 N N N -10.868 34.219 -10.343 -10.868 34.219 -10.343 H4 OJC 39
OJC H5 H5 H 0 1 N N N -9.941 33.517 -13.056 -9.941 33.517 -13.056 H5 OJC 40
OJC H6 H6 H 0 1 N N N -9.561 31.255 -12.783 -9.561 31.255 -12.783 H6 OJC 41
OJC H7 H7 H 0 1 N N N -11.671 30.516 -11.327 -11.671 30.516 -11.327 H7 OJC 42
OJC H9 H8 H 0 1 N N N -16.304 31.784 -16.149 -16.304 31.784 -16.149 H9 OJC 43
OJC H H9 H 0 1 N N N -13.055 30.018 -15.138 -13.055 30.018 -15.138 H OJC 44
OJC H1 H10 H 0 1 N N N -14.885 32.424 -14.644 -14.885 32.424 -14.644 H1 OJC 45
OJC H2 H11 H 0 1 N N N -13.701 32.661 -12.597 -13.701 32.661 -12.597 H2 OJC 46
OJC H3 H12 H 0 1 N N N -13.509 29.895 -12.147 -13.509 29.895 -12.147 H3 OJC 47
OJC H10 H13 H 0 1 N N N -16.028 29.987 -11.725 -16.028 29.987 -11.725 H10 OJC 48
OJC H11 H14 H 0 1 N N N -15.010 31.139 -10.796 -15.010 31.139 -10.796 H11 OJC 49
OJC H20 H15 H 0 1 N N N -16.952 27.160 -20.162 -16.952 27.160 -20.162 H20 OJC 50
OJC H19 H16 H 0 1 N N N -17.906 27.997 -19.134 -17.906 27.997 -19.134 H19 OJC 51
OJC H16 H17 H 0 1 N N N -9.422 30.236 -10.706 -9.422 30.236 -10.706 H16 OJC 52
OJC H17 H18 H 0 1 N N N -8.698 34.713 -11.495 -8.698 34.713 -11.495 H17 OJC 53
OJC H18 H19 H 0 1 N N N -12.905 33.492 -15.230 -12.905 33.492 -15.230 H18 OJC 54
OJC H12 H20 H 0 1 N N N -18.037 34.209 -11.158 -18.037 34.209 -11.158 H12 OJC 55
OJC H13 H21 H 0 1 N N N -14.297 37.013 -13.743 -14.297 37.013 -13.743 H13 OJC 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OJC N4 C1 SING N N 1
OJC C1 N DOUB Y N 2
OJC C1 C2 SING Y N 3
OJC N C SING Y N 4
OJC C2 N3 SING Y N 5
OJC C2 C3 DOUB Y N 6
OJC C N1 DOUB Y N 7
OJC N3 C4 DOUB Y N 8
OJC C3 N1 SING Y N 9
OJC C3 N2 SING Y N 10
OJC C4 N2 SING Y N 11
OJC N2 C5 SING N N 12
OJC O12 C6 SING N N 13
OJC C5 C6 SING N N 14
OJC C5 O SING N N 15
OJC C6 C7 SING N N 16
OJC O C8 SING N N 17
OJC O6 P1 SING N N 18
OJC C7 O9 SING N N 19
OJC C7 C8 SING N N 20
OJC O9 C14 SING N N 21
OJC C8 C9 SING N N 22
OJC O4 P1 SING N N 23
OJC O4 P SING N N 24
OJC O1 C9 SING N N 25
OJC O1 P SING N N 26
OJC P1 O7 SING N N 27
OJC P1 O5 DOUB N N 28
OJC C10 O7 SING N N 29
OJC C10 C11 SING N N 30
OJC C12 C13 SING N N 31
OJC C12 O11 SING N N 32
OJC C12 C11 SING N N 33
OJC O3 P SING N N 34
OJC C13 C14 SING N N 35
OJC C13 O10 SING N N 36
OJC C14 O8 SING N N 37
OJC P O2 DOUB N N 38
OJC C11 O8 SING N N 39
OJC C H8 SING N N 40
OJC C10 H14 SING N N 41
OJC C10 H15 SING N N 42
OJC C11 H4 SING N N 43
OJC C12 H5 SING N N 44
OJC C13 H6 SING N N 45
OJC C14 H7 SING N N 46
OJC C4 H9 SING N N 47
OJC C5 H SING N N 48
OJC C6 H1 SING N N 49
OJC C7 H2 SING N N 50
OJC C8 H3 SING N N 51
OJC C9 H10 SING N N 52
OJC C9 H11 SING N N 53
OJC N4 H20 SING N N 54
OJC N4 H19 SING N N 55
OJC O10 H16 SING N N 56
OJC O11 H17 SING N N 57
OJC O12 H18 SING N N 58
OJC O3 H12 SING N N 59
OJC O6 H13 SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OJC SMILES ACDLabs 12.01 "Nc1ncnc2c1ncn2C1OC2COP(=O)(O)OP(=O)(O)OCC3OC(OC2C1O)C(O)C3O"
OJC InChI InChI 1.03 "InChI=1S/C15H21N5O13P2/c16-12-7-13(18-3-17-12)20(4-19-7)14-10(23)11-6(30-14)2-29-35(26,27)33-34(24,25)28-1-5-8(21)9(22)15(31-5)32-11/h3-6,8-11,14-15,21-23H,1-2H2,(H,24,25)(H,26,27)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15+/m1/s1"
OJC InChIKey InChI 1.03 NDSLKXAJVDJCEG-ZQSHOCFMSA-N
OJC SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P](O)(=O)O[P](O)(=O)OC[C@H]5O[C@@H](O[C@H]4[C@H]3O)[C@H](O)[C@@H]5O"
OJC SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH](O[CH]4[CH]3O)[CH](O)[CH]5O"
OJC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(OP(=O)(OC[C@@H]5[C@H]([C@H]([C@@H](O5)O4)O)O)O)O)O)N"
OJC SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OP(=O)(OCC5C(C(C(O5)O4)O)O)O)O)O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OJC "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione"
OJC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},3~{S},4~{R},5~{R},7~{R},15~{R},16~{S},17~{R})-5-(6-aminopurin-9-yl)-10,12-bis(oxidanyl)-10,12-bis(oxidanylidene)-2,6,9,11,13,18-hexaoxa-10$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{3,7}]octadecane-4,16,17-triol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OJC "Create component" 2022-05-06 RCSB
OJC "Initial release" 2022-09-07 RCSB
#