data_OJT # _chem_comp.id OJT _chem_comp.name "(2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(3-chlorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-(2-methoxyphenyl)propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H36 Cl2 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-17 _chem_comp.pdbx_modified_date 2020-11-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 707.666 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OJT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YBG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OJT C1 C1 C 0 1 N N R 27.218 0.063 8.926 -0.271 3.104 -1.309 C1 OJT 1 OJT C2 C2 C 0 1 N N N 27.828 1.318 9.505 -1.584 2.838 -0.570 C2 OJT 2 OJT C3 C3 C 0 1 Y N N 27.335 1.540 10.911 -1.360 2.972 0.915 C3 OJT 3 OJT C4 C4 C 0 1 Y N N 27.834 0.752 11.959 -1.434 4.219 1.518 C4 OJT 4 OJT O1 O1 O 0 1 N N N 28.765 -0.158 11.578 -1.708 5.321 0.772 O1 OJT 5 OJT C5 C5 C 0 1 N N N 29.406 -0.947 12.581 -1.769 6.572 1.461 C5 OJT 6 OJT C6 C6 C 0 1 Y N N 27.367 0.917 13.252 -1.228 4.339 2.885 C6 OJT 7 OJT C7 C7 C 0 1 Y N N 26.411 1.886 13.509 -0.950 3.216 3.641 C7 OJT 8 OJT C8 C8 C 0 1 Y N N 25.918 2.675 12.491 -0.877 1.975 3.037 C8 OJT 9 OJT C9 C9 C 0 1 Y N N 26.389 2.508 11.200 -1.087 1.852 1.676 C9 OJT 10 OJT O2 O2 O 0 1 N N N 25.793 0.275 8.871 0.677 2.088 -0.977 O2 OJT 11 OJT C10 C10 C 0 1 Y N N 25.042 -0.707 8.376 1.985 2.440 -0.991 C10 OJT 12 OJT N1 N1 N 0 1 Y N N 25.579 -1.879 8.150 2.345 3.675 -1.302 N1 OJT 13 OJT C11 C11 C 0 1 Y N N 24.801 -2.869 7.685 3.616 4.032 -1.320 C11 OJT 14 OJT N2 N2 N 0 1 Y N N 23.523 -2.736 7.366 4.583 3.190 -1.034 N2 OJT 15 OJT C12 C12 C 0 1 Y N N 22.993 -1.522 7.565 4.318 1.919 -0.707 C12 OJT 16 OJT C13 C13 C 0 1 Y N N 23.700 -0.468 8.090 2.987 1.493 -0.668 C13 OJT 17 OJT C14 C14 C 0 1 Y N N 22.842 0.711 8.209 2.868 0.091 -0.297 C14 OJT 18 OJT C15 C15 C 0 1 Y N N 21.576 0.514 7.717 4.056 -0.521 -0.065 C15 OJT 19 OJT S1 S1 S 0 1 Y N N 21.352 -1.135 7.240 5.391 0.594 -0.283 S1 OJT 20 OJT C16 C16 C 0 1 Y N N 20.426 1.431 7.566 4.204 -1.936 0.325 C16 OJT 21 OJT C17 C17 C 0 1 Y N N 19.127 0.993 7.842 3.548 -2.935 -0.398 C17 OJT 22 OJT C18 C18 C 0 1 Y N N 18.049 1.855 7.734 3.692 -4.258 -0.027 C18 OJT 23 OJT CL1 CL1 CL 0 0 N N N 16.453 1.246 8.059 2.878 -5.502 -0.923 CL1 OJT 24 OJT C19 C19 C 0 1 Y N N 18.216 3.160 7.356 4.484 -4.594 1.058 C19 OJT 25 OJT C20 C20 C 0 1 Y N N 19.496 3.601 7.081 5.136 -3.608 1.778 C20 OJT 26 OJT C21 C21 C 0 1 Y N N 20.594 2.755 7.171 5.006 -2.284 1.415 C21 OJT 27 OJT C22 C22 C 0 1 Y N N 23.290 2.003 8.754 1.567 -0.606 -0.184 C22 OJT 28 OJT C23 C23 C 0 1 Y N N 22.809 2.465 9.986 0.886 -0.621 1.034 C23 OJT 29 OJT C24 C24 C 0 1 N N N 21.912 1.598 10.830 1.474 0.071 2.237 C24 OJT 30 OJT C25 C25 C 0 1 Y N N 23.202 3.726 10.430 -0.327 -1.271 1.135 C25 OJT 31 OJT CL2 CL2 CL 0 0 N N N 22.667 4.330 11.963 -1.176 -1.291 2.649 CL2 OJT 32 OJT C26 C26 C 0 1 Y N N 24.040 4.538 9.679 -0.870 -1.909 0.027 C26 OJT 33 OJT O3 O3 O 0 1 N N N 24.388 5.722 10.261 -2.066 -2.547 0.130 O3 OJT 34 OJT C27 C27 C 0 1 N N N 25.385 6.517 9.612 -2.566 -3.182 -1.049 C27 OJT 35 OJT C28 C28 C 0 1 N N N 25.765 7.674 10.505 -3.911 -3.843 -0.740 C28 OJT 36 OJT N3 N3 N 0 1 N N N 24.691 8.665 10.677 -4.899 -2.809 -0.407 N3 OJT 37 OJT C29 C29 C 0 1 N N N 25.191 10.057 10.695 -6.131 -3.410 0.123 C29 OJT 38 OJT C30 C30 C 0 1 N N N 24.058 11.046 10.879 -7.102 -2.300 0.532 C30 OJT 39 OJT N4 N4 N 0 1 N N N 23.282 10.773 12.093 -7.392 -1.452 -0.633 N4 OJT 40 OJT C31 C31 C 0 1 N N N 22.190 11.736 12.266 -8.380 -0.419 -0.299 C31 OJT 41 OJT C32 C32 C 0 1 N N N 22.775 9.402 12.058 -6.160 -0.851 -1.163 C32 OJT 42 OJT C33 C33 C 0 1 N N N 23.905 8.409 11.906 -5.189 -1.962 -1.572 C33 OJT 43 OJT C34 C34 C 0 1 Y N N 24.476 4.082 8.441 -0.195 -1.894 -1.186 C34 OJT 44 OJT C35 C35 C 0 1 Y N N 24.099 2.831 7.984 1.016 -1.243 -1.296 C35 OJT 45 OJT C36 C36 C 0 1 N N N 27.807 -0.182 7.549 -0.521 3.092 -2.795 C36 OJT 46 OJT O4 O4 O 0 1 N N N 28.720 -1.016 7.524 -1.304 4.029 -3.352 O4 OJT 47 OJT O5 O5 O 0 1 N N N 27.368 0.399 6.515 -0.016 2.238 -3.485 O5 OJT 48 OJT H1 H1 H 0 1 N N N 27.452 -0.791 9.578 0.121 4.078 -1.015 H1 OJT 49 OJT H2 H2 H 0 1 N N N 28.923 1.217 9.517 -2.335 3.560 -0.890 H2 OJT 50 OJT H3 H3 H 0 1 N N N 27.546 2.179 8.882 -1.930 1.829 -0.795 H3 OJT 51 OJT H4 H4 H 0 1 N N N 30.127 -1.629 12.107 -0.809 6.772 1.936 H4 OJT 52 OJT H5 H5 H 0 1 N N N 29.934 -0.287 13.285 -1.995 7.367 0.750 H5 OJT 53 OJT H6 H6 H 0 1 N N N 28.650 -1.533 13.125 -2.549 6.531 2.220 H6 OJT 54 OJT H7 H7 H 0 1 N N N 27.744 0.297 14.052 -1.285 5.308 3.357 H7 OJT 55 OJT H8 H8 H 0 1 N N N 26.048 2.025 14.517 -0.790 3.309 4.706 H8 OJT 56 OJT H9 H9 H 0 1 N N N 25.166 3.421 12.700 -0.659 1.099 3.631 H9 OJT 57 OJT H10 H10 H 0 1 N N N 26.014 3.141 10.409 -1.034 0.881 1.207 H10 OJT 58 OJT H11 H11 H 0 1 N N N 25.250 -3.844 7.562 3.870 5.049 -1.579 H11 OJT 59 OJT H12 H12 H 0 1 N N N 18.963 -0.031 8.143 2.930 -2.674 -1.244 H12 OJT 60 OJT H13 H13 H 0 1 N N N 17.370 3.827 7.275 4.594 -5.629 1.343 H13 OJT 61 OJT H14 H14 H 0 1 N N N 19.647 4.630 6.789 5.756 -3.877 2.620 H14 OJT 62 OJT H15 H15 H 0 1 N N N 21.580 3.125 6.934 5.516 -1.516 1.978 H15 OJT 63 OJT H16 H16 H 0 1 N N N 22.525 0.978 11.500 1.129 1.105 2.265 H16 OJT 64 OJT H17 H17 H 0 1 N N N 21.245 2.235 11.429 1.156 -0.443 3.143 H17 OJT 65 OJT H18 H18 H 0 1 N N N 21.310 0.948 10.177 2.562 0.053 2.171 H18 OJT 66 OJT H19 H19 H 0 1 N N N 26.274 5.900 9.413 -2.698 -2.438 -1.834 H19 OJT 67 OJT H20 H20 H 0 1 N N N 24.986 6.902 8.662 -1.856 -3.940 -1.382 H20 OJT 68 OJT H21 H21 H 0 1 N N N 26.032 7.276 11.495 -4.249 -4.402 -1.613 H21 OJT 69 OJT H22 H22 H 0 1 N N N 26.637 8.180 10.066 -3.796 -4.523 0.104 H22 OJT 70 OJT H24 H24 H 0 1 N N N 25.904 10.171 11.524 -6.592 -4.032 -0.645 H24 OJT 71 OJT H25 H25 H 0 1 N N N 25.699 10.268 9.743 -5.892 -4.023 0.993 H25 OJT 72 OJT H26 H26 H 0 1 N N N 24.479 12.060 10.947 -8.028 -2.743 0.898 H26 OJT 73 OJT H27 H27 H 0 1 N N N 23.388 10.985 10.008 -6.652 -1.695 1.319 H27 OJT 74 OJT H29 H29 H 0 1 N N N 21.633 11.499 13.184 -7.992 0.210 0.502 H29 OJT 75 OJT H30 H30 H 0 1 N N N 22.606 12.752 12.341 -8.576 0.194 -1.179 H30 OJT 76 OJT H31 H31 H 0 1 N N N 21.512 11.681 11.402 -9.306 -0.893 0.027 H31 OJT 77 OJT H32 H32 H 0 1 N N N 22.086 9.295 11.207 -6.399 -0.239 -2.032 H32 OJT 78 OJT H33 H33 H 0 1 N N N 22.237 9.194 12.994 -5.699 -0.230 -0.395 H33 OJT 79 OJT H34 H34 H 0 1 N N N 23.484 7.394 11.856 -4.263 -1.518 -1.938 H34 OJT 80 OJT H35 H35 H 0 1 N N N 24.570 8.488 12.779 -5.639 -2.567 -2.359 H35 OJT 81 OJT H36 H36 H 0 1 N N N 25.112 4.707 7.832 -0.620 -2.391 -2.046 H36 OJT 82 OJT H37 H37 H 0 1 N N N 24.438 2.493 7.016 1.540 -1.233 -2.240 H37 OJT 83 OJT H38 H38 H 0 1 N N N 29.017 -1.135 6.629 -1.434 3.980 -4.309 H38 OJT 84 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OJT O5 C36 DOUB N N 1 OJT C20 C21 DOUB Y N 2 OJT C20 C19 SING Y N 3 OJT C21 C16 SING Y N 4 OJT S1 C12 SING Y N 5 OJT S1 C15 SING Y N 6 OJT C19 C18 DOUB Y N 7 OJT N2 C12 DOUB Y N 8 OJT N2 C11 SING Y N 9 OJT O4 C36 SING N N 10 OJT C36 C1 SING N N 11 OJT C12 C13 SING Y N 12 OJT C16 C15 SING N N 13 OJT C16 C17 DOUB Y N 14 OJT C11 N1 DOUB Y N 15 OJT C15 C14 DOUB Y N 16 OJT C18 C17 SING Y N 17 OJT C18 CL1 SING N N 18 OJT C35 C34 DOUB Y N 19 OJT C35 C22 SING Y N 20 OJT C13 C14 SING Y N 21 OJT C13 C10 DOUB Y N 22 OJT N1 C10 SING Y N 23 OJT C14 C22 SING N N 24 OJT C10 O2 SING N N 25 OJT C34 C26 SING Y N 26 OJT C22 C23 DOUB Y N 27 OJT O2 C1 SING N N 28 OJT C1 C2 SING N N 29 OJT C2 C3 SING N N 30 OJT C27 O3 SING N N 31 OJT C27 C28 SING N N 32 OJT C26 O3 SING N N 33 OJT C26 C25 DOUB Y N 34 OJT C23 C25 SING Y N 35 OJT C23 C24 SING N N 36 OJT C25 CL2 SING N N 37 OJT C28 N3 SING N N 38 OJT N3 C29 SING N N 39 OJT N3 C33 SING N N 40 OJT C29 C30 SING N N 41 OJT C30 N4 SING N N 42 OJT C3 C9 DOUB Y N 43 OJT C3 C4 SING Y N 44 OJT C9 C8 SING Y N 45 OJT O1 C4 SING N N 46 OJT O1 C5 SING N N 47 OJT C33 C32 SING N N 48 OJT C4 C6 DOUB Y N 49 OJT C32 N4 SING N N 50 OJT N4 C31 SING N N 51 OJT C8 C7 DOUB Y N 52 OJT C6 C7 SING Y N 53 OJT C1 H1 SING N N 54 OJT C2 H2 SING N N 55 OJT C2 H3 SING N N 56 OJT C5 H4 SING N N 57 OJT C5 H5 SING N N 58 OJT C5 H6 SING N N 59 OJT C6 H7 SING N N 60 OJT C7 H8 SING N N 61 OJT C8 H9 SING N N 62 OJT C9 H10 SING N N 63 OJT C11 H11 SING N N 64 OJT C17 H12 SING N N 65 OJT C19 H13 SING N N 66 OJT C20 H14 SING N N 67 OJT C21 H15 SING N N 68 OJT C24 H16 SING N N 69 OJT C24 H17 SING N N 70 OJT C24 H18 SING N N 71 OJT C27 H19 SING N N 72 OJT C27 H20 SING N N 73 OJT C28 H21 SING N N 74 OJT C28 H22 SING N N 75 OJT C29 H24 SING N N 76 OJT C29 H25 SING N N 77 OJT C30 H26 SING N N 78 OJT C30 H27 SING N N 79 OJT C31 H29 SING N N 80 OJT C31 H30 SING N N 81 OJT C31 H31 SING N N 82 OJT C32 H32 SING N N 83 OJT C32 H33 SING N N 84 OJT C33 H34 SING N N 85 OJT C33 H35 SING N N 86 OJT C34 H36 SING N N 87 OJT C35 H37 SING N N 88 OJT O4 H38 SING N N 89 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OJT InChI InChI 1.03 "InChI=1S/C36H36Cl2N4O5S/c1-22-26(11-12-28(32(22)38)46-18-17-42-15-13-41(2)14-16-42)30-31-34(47-29(36(43)44)20-23-7-4-5-10-27(23)45-3)39-21-40-35(31)48-33(30)24-8-6-9-25(37)19-24/h4-12,19,21,29H,13-18,20H2,1-3H3,(H,43,44)/t29-/m1/s1" OJT InChIKey InChI 1.03 ZDIFLDSDDULOSG-GDLZYMKVSA-N OJT SMILES_CANONICAL CACTVS 3.385 "COc1ccccc1C[C@@H](Oc2ncnc3sc(c4cccc(Cl)c4)c(c5ccc(OCCN6CCN(C)CC6)c(Cl)c5C)c23)C(O)=O" OJT SMILES CACTVS 3.385 "COc1ccccc1C[CH](Oc2ncnc3sc(c4cccc(Cl)c4)c(c5ccc(OCCN6CCN(C)CC6)c(Cl)c5C)c23)C(O)=O" OJT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc(c1Cl)OCCN2CCN(CC2)C)c3c4c(ncnc4sc3c5cccc(c5)Cl)O[C@H](Cc6ccccc6OC)C(=O)O" OJT SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc(c1Cl)OCCN2CCN(CC2)C)c3c4c(ncnc4sc3c5cccc(c5)Cl)OC(Cc6ccccc6OC)C(=O)O" # _pdbx_chem_comp_identifier.comp_id OJT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(3-chlorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-(2-methoxyphenyl)propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OJT "Create component" 2020-03-17 PDBE OJT "Initial release" 2020-11-18 RCSB ##