data_OJY # _chem_comp.id OJY _chem_comp.name "5-[5-(hydroxymethyl)-1H-imidazol-2-yl]-L-norvaline" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H15 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-06-26 _chem_comp.pdbx_modified_date 2019-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 213.234 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OJY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6PGD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OJY C11 C1 C 0 1 N N N -1.921 -5.547 -4.646 -0.250 -0.654 -0.932 C11 OJY 1 OJY C14 C2 C 0 1 Y N N -5.298 -4.227 -5.124 -3.751 0.087 -0.196 C14 OJY 2 OJY C10 C3 C 0 1 N N N -1.784 -7.050 -4.888 0.758 -0.118 0.087 C10 OJY 3 OJY C12 C4 C 0 1 Y N N -3.348 -5.000 -4.550 -1.647 -0.484 -0.393 C12 OJY 4 OJY C17 C5 C 0 1 N N N -6.454 -3.741 -5.985 -5.117 0.662 -0.467 C17 OJY 5 OJY C15 C6 C 0 1 Y N N -5.178 -4.185 -3.732 -3.373 -0.602 0.897 C15 OJY 6 OJY C06 C11 C 0 1 N N N -0.511 -9.614 -4.506 4.584 -0.037 0.076 C06 OJY 7 OJY O07 O1 O 0 1 N N N -0.533 -9.620 -5.718 5.226 0.837 -0.458 O07 OJY 8 OJY C08 C12 C 0 1 N N S -1.819 -9.334 -3.766 3.184 0.245 0.559 C08 OJY 9 OJY C09 C13 C 0 1 N N N -2.003 -7.816 -3.587 2.176 -0.291 -0.460 C09 OJY 10 OJY N13 N2 N 0 1 Y N N -4.137 -4.752 -5.586 -2.658 0.159 -1.017 N13 OJY 11 OJY N16 N3 N 0 1 Y N N -3.959 -4.647 -3.411 -2.082 -0.937 0.751 N16 OJY 12 OJY O18 O2 O 0 1 N N N -7.552 -3.346 -5.192 -5.983 0.373 0.633 O18 OJY 13 OJY N19 N4 N 0 1 N N N -1.840 -9.932 -2.435 3.001 1.694 0.713 N19 OJY 14 OJY H1 H1 H 0 1 N N N -1.419 -5.027 -5.475 -0.151 -0.102 -1.866 H1 OJY 15 OJY H2 H2 H 0 1 N N N -1.408 -5.312 -3.702 -0.057 -1.712 -1.112 H2 OJY 16 OJY H3 H3 H 0 1 N N N -2.533 -7.369 -5.628 0.565 0.939 0.268 H3 OJY 17 OJY H4 H4 H 0 1 N N N -0.776 -7.266 -5.271 0.659 -0.670 1.021 H4 OJY 18 OJY H5 H5 H 0 1 N N N -6.118 -2.883 -6.585 -5.038 1.742 -0.593 H5 OJY 19 OJY H6 H6 H 0 1 N N N -6.770 -4.555 -6.654 -5.525 0.219 -1.375 H6 OJY 20 OJY H7 H7 H 0 1 N N N -5.931 -3.842 -3.038 -3.999 -0.843 1.744 H7 OJY 21 OJY H17 H17 H 0 1 N N N -2.657 -9.724 -4.363 3.026 -0.246 1.519 H17 OJY 22 OJY H18 H18 H 0 1 N N N -1.280 -7.458 -2.839 2.370 -1.349 -0.640 H18 OJY 23 OJY H19 H19 H 0 1 N N N -3.026 -7.623 -3.230 2.276 0.261 -1.394 H19 OJY 24 OJY H20 H20 H 0 1 N N N -3.914 -4.923 -6.546 -2.617 0.591 -1.884 H20 OJY 25 OJY H22 H22 H 0 1 N N N -8.258 -3.048 -5.754 -6.881 0.715 0.527 H22 OJY 26 OJY H23 H23 H 0 1 N N N -2.711 -9.724 -1.989 3.143 2.171 -0.165 H23 OJY 27 OJY OXT OXT O 0 1 N Y N 0.700 -9.855 -3.765 5.118 -1.257 0.240 OXT OJY 28 OJY HXT HXT H 0 1 N Y N 1.417 -10.007 -4.370 6.019 -1.390 -0.086 HXT OJY 29 OJY H8 H8 H 0 1 N Y N -1.734 -10.923 -2.513 2.092 1.905 1.097 H8 OJY 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OJY C11 C12 SING N N 1 OJY C11 C10 SING N N 2 OJY C14 C17 SING N N 3 OJY C14 N13 SING Y N 4 OJY C14 C15 DOUB Y N 5 OJY C10 C09 SING N N 6 OJY C12 N13 SING Y N 7 OJY C12 N16 DOUB Y N 8 OJY C17 O18 SING N N 9 OJY C15 N16 SING Y N 10 OJY C06 O07 DOUB N N 11 OJY C06 C08 SING N N 12 OJY C08 N19 SING N N 13 OJY C08 C09 SING N N 14 OJY C11 H1 SING N N 15 OJY C11 H2 SING N N 16 OJY C10 H3 SING N N 17 OJY C10 H4 SING N N 18 OJY C17 H5 SING N N 19 OJY C17 H6 SING N N 20 OJY C15 H7 SING N N 21 OJY C08 H17 SING N N 22 OJY C09 H18 SING N N 23 OJY C09 H19 SING N N 24 OJY N13 H20 SING N N 25 OJY O18 H22 SING N N 26 OJY N19 H23 SING N N 27 OJY C06 OXT SING N N 28 OJY OXT HXT SING N N 29 OJY N19 H8 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OJY SMILES ACDLabs 12.01 "C(c1nc(CO)cn1)CCC(C(=O)O)N" OJY InChI InChI 1.03 "InChI=1S/C9H15N3O3/c10-7(9(14)15)2-1-3-8-11-4-6(5-13)12-8/h4,7,13H,1-3,5,10H2,(H,11,12)(H,14,15)/t7-/m0/s1" OJY InChIKey InChI 1.03 LQZCDDAMPJTCPF-ZETCQYMHSA-N OJY SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCc1[nH]c(CO)cn1)C(O)=O" OJY SMILES CACTVS 3.385 "N[CH](CCCc1[nH]c(CO)cn1)C(O)=O" OJY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c([nH]c(n1)CCC[C@@H](C(=O)O)N)CO" OJY SMILES "OpenEye OEToolkits" 2.0.7 "c1c([nH]c(n1)CCCC(C(=O)O)N)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OJY "SYSTEMATIC NAME" ACDLabs 12.01 "5-[5-(hydroxymethyl)-1H-imidazol-2-yl]-L-norvaline" OJY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-5-[5-(hydroxymethyl)-1~{H}-imidazol-2-yl]pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OJY "Create component" 2019-06-26 RCSB OJY "Initial release" 2019-12-11 RCSB ##