data_OK3
#
_chem_comp.id OK3
_chem_comp.name "(4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H18 B N2 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 2015-12-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 357.146
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OK3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5FQB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OK3 N01 N01 N 0 1 N N N N N N 53.672 10.370 29.728 7.886 0.945 1.119 N01 OK3 1
OK3 C02 C02 C 0 1 N N N N N N 54.290 11.592 29.356 7.482 -0.319 0.489 C02 OK3 2
OK3 C03 C03 C 0 1 Y N N N N N 55.370 11.329 28.307 6.021 -0.254 0.124 C03 OK3 3
OK3 C04 C04 C 0 1 Y N N N N N 55.043 11.274 26.959 5.642 0.220 -1.119 C04 OK3 4
OK3 C05 C05 C 0 1 Y N N N N N 56.039 11.025 25.998 4.307 0.282 -1.460 C05 OK3 5
OK3 C06 C06 C 0 1 Y N N N N N 57.367 10.861 26.389 3.337 -0.134 -0.546 C06 OK3 6
OK3 C07 C07 C 0 1 Y N N N N N 57.665 10.884 27.739 3.726 -0.612 0.706 C07 OK3 7
OK3 C08 C08 C 0 1 Y N N N N N 56.697 11.133 28.702 5.065 -0.673 1.032 C08 OK3 8
OK3 C09 C09 C 0 1 N N N N N N 58.440 10.540 25.329 1.904 -0.070 -0.904 C09 OK3 9
OK3 O10 O10 O 0 1 N N N N N N 58.216 10.738 24.139 1.568 0.346 -1.996 O10 OK3 10
OK3 N11 N11 N 0 1 N N N N N N 59.705 9.933 25.685 0.970 -0.473 -0.020 N11 OK3 11
OK3 C12 C12 C 0 1 N N R N N N 60.650 9.529 24.663 -0.450 -0.410 -0.375 C12 OK3 12
OK3 C13 C13 C 0 1 N N N N N N 61.689 10.492 24.247 -1.148 -1.711 0.037 C13 OK3 13
OK3 C14 C14 C 0 1 Y N N N N N 62.960 10.326 25.057 -2.641 -1.494 0.028 C14 OK3 14
OK3 C15 C15 C 0 1 Y N N N N N 63.394 9.080 25.463 -3.189 -0.225 0.006 C15 OK3 15
OK3 O16 O16 O 0 1 N N N N N N 62.627 7.890 25.072 -2.440 0.902 -0.019 O16 OK3 16
OK3 B17 B17 B -1 1 N N N N N N 61.244 8.112 25.308 -1.155 0.791 0.417 B17 OK3 17
OK3 O18 O18 O 0 1 N N N N N N 60.447 6.774 24.677 -0.485 1.957 0.174 O18 OK3 18
OK3 O19 O19 O 0 1 N N N N N N 61.093 8.042 26.964 -1.146 0.523 1.758 O19 OK3 19
OK3 C20 C20 C 0 1 Y N N N N N 64.568 8.934 26.215 -4.590 -0.080 0.005 C20 OK3 20
OK3 C21 C21 C 0 1 Y N N N N N 65.271 10.074 26.587 -5.409 -1.210 0.022 C21 OK3 21
OK3 C22 C22 C 0 1 Y N N N N N 64.831 11.348 26.174 -4.843 -2.466 0.039 C22 OK3 22
OK3 C23 C23 C 0 1 Y N N N N N 63.664 11.477 25.398 -3.466 -2.606 0.042 C23 OK3 23
OK3 C24 C24 C 0 1 N N N N N N 64.970 7.551 26.687 -5.192 1.265 -0.012 C24 OK3 24
OK3 O25 O25 O 0 1 N N N N N N 65.493 7.475 27.829 -4.479 2.249 -0.026 O25 OK3 25
OK3 O26 O26 O 0 1 N N N N N N 64.724 6.488 26.051 -6.532 1.404 -0.013 O26 OK3 26
OK3 H011 H011 H 0 0 N N N N N N 52.967 10.548 30.414 8.863 0.926 1.373 H011 OK3 27
OK3 H012 H012 H 0 0 N N N N N N 53.255 9.949 28.923 7.684 1.730 0.517 H012 OK3 28
OK3 H021 H021 H 0 0 N N N N N N 53.533 12.271 28.938 8.074 -0.482 -0.411 H021 OK3 29
OK3 H022 H022 H 0 0 N N N N N N 54.748 12.054 30.243 7.646 -1.141 1.186 H022 OK3 30
OK3 H04 H04 H 0 1 N N N N N N 54.020 11.423 26.647 6.394 0.543 -1.825 H04 OK3 31
OK3 H08 H08 H 0 1 N N N N N N 56.966 11.175 29.747 5.368 -1.046 2.000 H08 OK3 32
OK3 H05 H05 H 0 1 N N N N N N 55.774 10.961 24.953 4.013 0.652 -2.431 H05 OK3 33
OK3 H07 H07 H 0 1 N N N N N N 58.682 10.703 28.054 2.980 -0.935 1.418 H07 OK3 34
OK3 H11 H11 H 0 1 N N N N N N 59.930 9.791 26.649 1.238 -0.806 0.851 H11 OK3 35
OK3 H12 H12 H 0 1 N N N N N N 60.083 9.236 23.767 -0.556 -0.258 -1.449 H12 OK3 36
OK3 H131 H131 H 0 0 N N N N N N 61.920 10.331 23.184 -0.890 -2.502 -0.667 H131 OK3 37
OK3 H132 H132 H 0 0 N N N N N N 61.306 11.513 24.389 -0.827 -1.995 1.040 H132 OK3 38
OK3 H23 H23 H 0 1 N N N N N N 63.322 12.449 25.074 -3.030 -3.594 0.056 H23 OK3 39
OK3 H18 H18 H 0 1 N N N N N N 60.804 5.982 25.061 -0.859 2.727 0.624 H18 OK3 40
OK3 H19 H19 H 0 1 N N N N N N 61.445 7.218 27.280 -1.559 1.211 2.299 H19 OK3 41
OK3 H21 H21 H 0 1 N N N N N N 66.159 9.983 27.195 -6.483 -1.100 0.021 H21 OK3 42
OK3 H22 H22 H 0 1 N N N N N N 65.391 12.228 26.454 -5.475 -3.342 0.051 H22 OK3 43
OK3 H26 H26 H 0 1 N N N N N N 64.991 5.739 26.570 -6.880 2.306 -0.024 H26 OK3 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OK3 N01 C02 SING N N 1
OK3 C02 C03 SING N N 2
OK3 C03 C04 SING Y N 3
OK3 C03 C08 DOUB Y N 4
OK3 C04 C05 DOUB Y N 5
OK3 C05 C06 SING Y N 6
OK3 C06 C07 DOUB Y N 7
OK3 C06 C09 SING N N 8
OK3 C07 C08 SING Y N 9
OK3 C09 O10 DOUB N N 10
OK3 C09 N11 SING N N 11
OK3 N11 C12 SING N N 12
OK3 C12 C13 SING N N 13
OK3 C12 B17 SING N N 14
OK3 C13 C14 SING N N 15
OK3 C14 C15 SING Y N 16
OK3 C14 C23 DOUB Y N 17
OK3 C15 O16 SING N N 18
OK3 C15 C20 DOUB Y N 19
OK3 O16 B17 SING N N 20
OK3 B17 O18 SING N N 21
OK3 B17 O19 SING N N 22
OK3 C20 C21 SING Y N 23
OK3 C20 C24 SING N N 24
OK3 C21 C22 DOUB Y N 25
OK3 C22 C23 SING Y N 26
OK3 C24 O25 DOUB N N 27
OK3 C24 O26 SING N N 28
OK3 N01 H011 SING N N 29
OK3 N01 H012 SING N N 30
OK3 C02 H021 SING N N 31
OK3 C02 H022 SING N N 32
OK3 C04 H04 SING N N 33
OK3 C08 H08 SING N N 34
OK3 C05 H05 SING N N 35
OK3 C07 H07 SING N N 36
OK3 N11 H11 SING N N 37
OK3 C12 H12 SING N N 38
OK3 C13 H131 SING N N 39
OK3 C13 H132 SING N N 40
OK3 C23 H23 SING N N 41
OK3 O18 H18 SING N N 42
OK3 O19 H19 SING N N 43
OK3 C21 H21 SING N N 44
OK3 C22 H22 SING N N 45
OK3 O26 H26 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OK3 InChI InChI 1.03 "InChI=1S/C17H18BN2O6/c19-9-10-4-6-11(7-5-10)16(21)20-14-8-12-2-1-3-13(17(22)23)15(12)26-18(14,24)25/h1-7,14,24-25H,8-9,19H2,(H,20,21)(H,22,23)/q-1/t14-/m0/s1"
OK3 InChIKey InChI 1.03 QLXKUYDHLJOWQG-AWEZNQCLSA-N
OK3 SMILES_CANONICAL CACTVS 3.385 "NCc1ccc(cc1)C(=O)N[C@H]2Cc3cccc(C(O)=O)c3O[B-]2(O)O"
OK3 SMILES CACTVS 3.385 "NCc1ccc(cc1)C(=O)N[CH]2Cc3cccc(C(O)=O)c3O[B-]2(O)O"
OK3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]1([C@H](Cc2cccc(c2O1)C(=O)O)NC(=O)c3ccc(cc3)CN)(O)O"
OK3 SMILES "OpenEye OEToolkits" 2.0.7 "[B-]1(C(Cc2cccc(c2O1)C(=O)O)NC(=O)c3ccc(cc3)CN)(O)O"
#
_pdbx_chem_comp_identifier.comp_id OK3
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OK3 "Create component" 2015-12-08 EBI
OK3 "Initial release" 2016-08-10 RCSB
OK3 "Other modification" 2019-10-18 PDBE
OK3 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id OK3
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom B17
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#