data_OK6 # _chem_comp.id OK6 _chem_comp.name "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-(4-azanyl-5-phenyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H29 N9 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2',3'-cyclic-GMP-7-deazaphenyl-AMP" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-13 _chem_comp.pdbx_modified_date 2023-05-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 749.519 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OK6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A2H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OK6 N1 N1 N 0 1 Y N N 0.212 27.049 3.745 -7.197 2.376 1.043 N1 OK6 1 OK6 N3 N2 N 0 1 Y N N 2.586 27.142 3.987 -5.052 3.138 0.630 N3 OK6 2 OK6 C4 C1 C 0 1 Y N N 2.543 28.462 4.325 -4.667 1.947 0.171 C4 OK6 3 OK6 C5 C2 C 0 1 Y N N 1.238 29.153 4.394 -5.607 0.902 0.146 C5 OK6 4 OK6 C6 C3 C 0 1 Y N N 0.021 28.356 4.067 -6.907 1.154 0.603 C6 OK6 5 OK6 C7 C4 C 0 1 Y N N -1.596 32.509 5.282 -6.688 -3.523 0.186 C7 OK6 6 OK6 C8 C5 C 0 1 Y N N 2.903 30.761 4.970 -3.636 0.134 -0.660 C8 OK6 7 OK6 C10 C6 C 0 1 Y N N 0.309 33.950 5.100 -5.840 -3.507 -2.059 C10 OK6 8 OK6 C11 C7 C 0 1 Y N N 1.105 32.815 4.935 -5.310 -2.250 -1.856 C11 OK6 9 OK6 C12 C8 C 0 1 Y N N 1.511 30.436 4.772 -4.905 -0.266 -0.401 C12 OK6 10 OK6 C9 C9 C 0 1 Y N N -1.064 33.801 5.270 -6.528 -4.143 -1.041 C9 OK6 11 OK6 C3 C10 C 0 1 Y N N -0.767 31.389 5.121 -6.167 -2.263 0.398 C3 OK6 12 OK6 C2 C11 C 0 1 Y N N 1.451 26.483 3.702 -6.284 3.330 1.050 C2 OK6 13 OK6 C1 C12 C 0 1 Y N N 0.631 31.483 4.945 -5.473 -1.617 -0.624 C1 OK6 14 OK6 "C1'" C13 C 0 1 N N R 4.901 29.324 4.745 -2.253 2.220 -0.464 "C1'" OK6 15 OK6 C16 C14 C 0 1 N N N 6.169 32.592 5.350 0.590 0.306 -1.286 C16 OK6 16 OK6 "C2'" C15 C 0 1 N N R 5.304 29.594 3.321 -1.463 2.203 0.855 "C2'" OK6 17 OK6 C21 C16 C 0 1 N N R 4.003 34.831 2.910 3.898 -0.019 -0.520 C21 OK6 18 OK6 C22 C17 C 0 1 N N R 5.435 35.209 2.599 4.796 1.228 -0.737 C22 OK6 19 OK6 C24 C18 C 0 1 N N R 5.428 35.399 1.087 5.371 1.478 0.673 C24 OK6 20 OK6 C25 C19 C 0 1 N N N 6.045 34.176 0.419 4.473 2.487 1.400 C25 OK6 21 OK6 "C3'" C20 C 0 1 N N S 5.837 31.025 3.358 0.007 2.062 0.420 "C3'" OK6 22 OK6 C32 C21 C 0 1 N N R 3.184 35.412 1.766 4.596 -0.755 0.643 C32 OK6 23 OK6 C34 C22 C 0 1 Y N N 2.020 33.197 1.204 3.059 -0.815 2.645 C34 OK6 24 OK6 C36 C23 C 0 1 Y N N 0.827 34.877 1.811 2.990 -2.582 1.329 C36 OK6 25 OK6 C37 C24 C 0 1 Y N N -0.063 33.740 1.561 2.103 -2.745 2.400 C37 OK6 26 OK6 C38 C25 C 0 1 N N N -1.512 33.981 1.787 1.347 -3.937 2.477 C38 OK6 27 OK6 "C4'" C26 C 0 1 N N R 6.377 31.193 4.777 -0.053 1.676 -1.065 "C4'" OK6 28 OK6 C40 C27 C 0 1 N N N -0.995 36.221 2.392 2.395 -4.652 0.493 C40 OK6 29 OK6 N01 N3 N 0 1 N N N -1.326 28.963 4.113 -7.866 0.157 0.598 N01 OK6 30 OK6 N33 N4 N 0 1 Y N N 2.052 34.497 1.563 3.584 -1.362 1.510 N33 OK6 31 OK6 N35 N5 N 0 1 Y N N 0.741 32.715 1.188 2.189 -1.630 3.166 N35 OK6 32 OK6 N39 N6 N 0 1 N N N -1.894 35.212 2.185 1.515 -4.868 1.512 N39 OK6 33 OK6 N41 N7 N 0 1 N N N -1.341 37.612 2.840 2.545 -5.614 -0.473 N41 OK6 34 OK6 N42 N8 N 0 1 N N N 0.325 36.049 2.203 3.105 -3.548 0.411 N42 OK6 35 OK6 N9 N9 N 0 1 Y N N 3.409 29.424 4.675 -3.490 1.451 -0.321 N9 OK6 36 OK6 O17 O1 O 0 1 N N N 4.810 33.005 5.179 1.598 0.399 -2.294 O17 OK6 37 OK6 O19 O2 O 0 1 N N N 5.544 35.219 6.006 3.020 -0.679 -4.083 O19 OK6 38 OK6 "O2'" O3 O 0 1 N N N 6.225 28.586 2.888 -1.661 3.433 1.557 "O2'" OK6 39 OK6 O20 O4 O 0 1 N N N 3.657 35.273 4.221 3.852 -0.807 -1.700 O20 OK6 40 OK6 O23 O5 O 0 1 N N N 5.818 36.384 3.349 5.845 0.935 -1.659 O23 OK6 41 OK6 O26 O6 O 0 1 N N N 5.303 33.025 0.771 3.126 2.336 0.951 O26 OK6 42 OK6 O28 O7 O 0 1 N N N 6.714 31.317 2.267 0.700 3.301 0.592 O28 OK6 43 OK6 O29 O8 O 0 1 N N N 5.002 30.580 0.549 2.753 4.931 0.833 O29 OK6 44 OK6 O30 O9 O 0 1 N N N 7.108 31.651 -0.243 2.462 3.480 -1.204 O30 OK6 45 OK6 O31 O10 O 0 1 N N N 4.063 35.526 0.667 5.333 0.229 1.369 O31 OK6 46 OK6 "O4'" O11 O 0 1 N N N 5.582 30.295 5.560 -1.426 1.623 -1.464 "O4'" OK6 47 OK6 O43 O12 O 0 1 N N N -2.330 33.045 1.605 0.563 -4.122 3.393 O43 OK6 48 OK6 O44 O13 O 0 1 N N N 3.277 34.467 6.520 1.781 -2.214 -2.503 O44 OK6 49 OK6 P18 P1 P 0 1 N N N 4.346 34.507 5.474 2.571 -0.823 -2.681 P18 OK6 50 OK6 P27 P2 P 0 1 N N N 6.056 31.608 0.830 2.263 3.504 0.264 P27 OK6 51 OK6 H1 H1 H 0 1 N N N -2.659 32.371 5.417 -7.226 -4.023 0.977 H1 OK6 52 OK6 H2 H2 H 0 1 N N N 3.401 31.680 5.243 -2.858 -0.492 -1.072 H2 OK6 53 OK6 H3 H3 H 0 1 N N N 0.754 34.934 5.096 -5.718 -3.996 -3.014 H3 OK6 54 OK6 H4 H4 H 0 1 N N N 2.164 32.966 4.788 -4.769 -1.756 -2.650 H4 OK6 55 OK6 H5 H5 H 0 1 N N N -1.703 34.663 5.390 -6.941 -5.127 -1.203 H5 OK6 56 OK6 H6 H6 H 0 1 N N N -1.219 30.408 5.132 -6.297 -1.777 1.354 H6 OK6 57 OK6 H7 H7 H 0 1 N N N 1.525 25.443 3.422 -6.560 4.308 1.414 H7 OK6 58 OK6 H8 H8 H 0 1 N N N 5.195 28.303 5.028 -2.486 3.248 -0.737 H8 OK6 59 OK6 H9 H9 H 0 1 N N N 6.413 32.584 6.423 1.034 -0.047 -0.357 H9 OK6 60 OK6 H10 H10 H 0 1 N N N 6.831 33.299 4.829 -0.167 -0.407 -1.608 H10 OK6 61 OK6 H11 H11 H 0 1 N N N 4.405 29.573 2.688 -1.770 1.360 1.469 H11 OK6 62 OK6 H12 H12 H 0 1 N N N 3.921 33.735 2.864 2.902 0.295 -0.210 H12 OK6 63 OK6 H13 H13 H 0 1 N N N 6.095 34.366 2.852 4.208 2.078 -1.075 H13 OK6 64 OK6 H14 H14 H 0 1 N N N 6.006 36.297 0.823 6.385 1.837 0.603 H14 OK6 65 OK6 H15 H15 H 0 1 N N N 7.086 34.059 0.756 4.521 2.300 2.476 H15 OK6 66 OK6 H16 H16 H 0 1 N N N 6.026 34.305 -0.673 4.823 3.499 1.194 H16 OK6 67 OK6 H17 H17 H 0 1 N N N 4.963 31.688 3.273 0.504 1.281 0.996 H17 OK6 68 OK6 H18 H18 H 0 1 N N N 2.809 36.403 2.063 5.259 -1.519 0.252 H18 OK6 69 OK6 H19 H19 H 0 1 N N N 2.894 32.611 0.960 3.329 0.148 3.052 H19 OK6 70 OK6 H20 H20 H 0 1 N N N 7.443 30.924 4.811 0.468 2.420 -1.667 H20 OK6 71 OK6 H21 H21 H 0 1 N N N -2.011 28.273 3.878 -8.763 0.344 0.917 H21 OK6 72 OK6 H22 H22 H 0 1 N N N -1.504 29.310 5.034 -7.642 -0.730 0.274 H22 OK6 73 OK6 H23 H23 H 0 1 N N N -2.866 35.392 2.333 1.008 -5.694 1.544 H23 OK6 74 OK6 H24 H24 H 0 1 N N N -0.618 38.291 2.965 2.029 -6.434 -0.425 H24 OK6 75 OK6 H25 H25 H 0 1 N N N -2.294 37.859 3.013 3.167 -5.475 -1.204 H25 OK6 76 OK6 H26 H26 H 0 1 N N N 5.797 27.738 2.901 -2.570 3.574 1.855 H26 OK6 77 OK6 H27 H27 H 0 1 N N N 5.788 36.191 4.279 6.437 1.680 -1.832 H27 OK6 78 OK6 H28 H28 H 0 1 N N N 5.199 30.139 -0.269 3.685 5.123 0.661 H28 OK6 79 OK6 H29 H29 H 0 1 N N N 3.585 34.904 7.305 0.991 -2.292 -3.056 H29 OK6 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OK6 O30 P27 DOUB N N 1 OK6 C25 O26 SING N N 2 OK6 C25 C24 SING N N 3 OK6 O29 P27 SING N N 4 OK6 O31 C24 SING N N 5 OK6 O31 C32 SING N N 6 OK6 O26 P27 SING N N 7 OK6 P27 O28 SING N N 8 OK6 C24 C22 SING N N 9 OK6 N35 C34 DOUB Y N 10 OK6 N35 C37 SING Y N 11 OK6 C34 N33 SING Y N 12 OK6 C37 C38 SING N N 13 OK6 C37 C36 DOUB Y N 14 OK6 N33 C32 SING N N 15 OK6 N33 C36 SING Y N 16 OK6 O43 C38 DOUB N N 17 OK6 C32 C21 SING N N 18 OK6 C38 N39 SING N N 19 OK6 C36 N42 SING N N 20 OK6 N39 C40 SING N N 21 OK6 N42 C40 DOUB N N 22 OK6 O28 "C3'" SING N N 23 OK6 C40 N41 SING N N 24 OK6 C22 C21 SING N N 25 OK6 C22 O23 SING N N 26 OK6 "O2'" "C2'" SING N N 27 OK6 C21 O20 SING N N 28 OK6 "C2'" "C3'" SING N N 29 OK6 "C2'" "C1'" SING N N 30 OK6 "C3'" "C4'" SING N N 31 OK6 C2 N1 DOUB Y N 32 OK6 C2 N3 SING Y N 33 OK6 N1 C6 SING Y N 34 OK6 N3 C4 DOUB Y N 35 OK6 C6 N01 SING N N 36 OK6 C6 C5 DOUB Y N 37 OK6 O20 P18 SING N N 38 OK6 C4 C5 SING Y N 39 OK6 C4 N9 SING Y N 40 OK6 C5 C12 SING Y N 41 OK6 N9 "C1'" SING N N 42 OK6 N9 C8 SING Y N 43 OK6 "C1'" "O4'" SING N N 44 OK6 C12 C1 SING N N 45 OK6 C12 C8 DOUB Y N 46 OK6 "C4'" C16 SING N N 47 OK6 "C4'" "O4'" SING N N 48 OK6 C11 C1 DOUB Y N 49 OK6 C11 C10 SING Y N 50 OK6 C1 C3 SING Y N 51 OK6 C10 C9 DOUB Y N 52 OK6 C3 C7 DOUB Y N 53 OK6 O17 C16 SING N N 54 OK6 O17 P18 SING N N 55 OK6 C9 C7 SING Y N 56 OK6 P18 O19 DOUB N N 57 OK6 P18 O44 SING N N 58 OK6 C7 H1 SING N N 59 OK6 C8 H2 SING N N 60 OK6 C10 H3 SING N N 61 OK6 C11 H4 SING N N 62 OK6 C9 H5 SING N N 63 OK6 C3 H6 SING N N 64 OK6 C2 H7 SING N N 65 OK6 "C1'" H8 SING N N 66 OK6 C16 H9 SING N N 67 OK6 C16 H10 SING N N 68 OK6 "C2'" H11 SING N N 69 OK6 C21 H12 SING N N 70 OK6 C22 H13 SING N N 71 OK6 C24 H14 SING N N 72 OK6 C25 H15 SING N N 73 OK6 C25 H16 SING N N 74 OK6 "C3'" H17 SING N N 75 OK6 C32 H18 SING N N 76 OK6 C34 H19 SING N N 77 OK6 "C4'" H20 SING N N 78 OK6 N01 H21 SING N N 79 OK6 N01 H22 SING N N 80 OK6 N39 H23 SING N N 81 OK6 N41 H24 SING N N 82 OK6 N41 H25 SING N N 83 OK6 "O2'" H26 SING N N 84 OK6 O23 H27 SING N N 85 OK6 O29 H28 SING N N 86 OK6 O44 H29 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OK6 InChI InChI 1.06 "InChI=1S/C27H29N9O13P2/c28-21-15-12(11-4-2-1-3-5-11)6-35(22(15)31-9-30-21)25-18(38)19-14(47-25)8-45-51(42,43)49-20-17(37)13(7-44-50(40,41)48-19)46-26(20)36-10-32-16-23(36)33-27(29)34-24(16)39/h1-6,9-10,13-14,17-20,25-26,37-38H,7-8H2,(H,40,41)(H,42,43)(H2,28,30,31)(H3,29,33,34,39)/t13-,14-,17-,18-,19-,20-,25-,26-/m1/s1" OK6 InChIKey InChI 1.06 FBIPVHNFXGBUQO-RTZOWOBBSA-N OK6 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6cc(c7ccccc7)c8c(N)ncnc68" OK6 SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cc(c7ccccc7)c8c(N)ncnc68" OK6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cn(c3c2c(ncn3)N)[C@H]4[C@@H]([C@H]5[C@H](O4)COP(=O)(O[C@@H]6[C@@H]([C@@H](COP(=O)(O5)O)O[C@H]6n7cnc8c7N=C(NC8=O)N)O)O)O" OK6 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cn(c3c2c(ncn3)N)C4C(C5C(O4)COP(=O)(OC6C(C(COP(=O)(O5)O)OC6n7cnc8c7N=C(NC8=O)N)O)O)O" # _pdbx_chem_comp_identifier.comp_id OK6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-(4-azanyl-5-phenyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id OK6 _pdbx_chem_comp_synonyms.name "2',3'-cyclic-GMP-7-deazaphenyl-AMP" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OK6 "Create component" 2022-09-13 PDBE OK6 "Initial release" 2022-10-12 RCSB OK6 "Modify formula" 2023-05-15 PDBE #